Fluorine in PDB 7vsh: Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Enzymatic activity of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

All present enzymatic activity of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.:
7.6.2.1;

Other elements in 7vsh:

The structure of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Aluminium	(Al)	1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. (pdb code 7vsh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State., PDB code: 7vsh:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7vsh

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Fluorine Binding Sites List in 7vsh

Fluorine binding site 1 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1101 b:22.2 occ:1.00	F1	A:ALF1101	0.0	22.2	1.0
	AL	A:ALF1101	1.8	22.2	1.0
	MG	A:MG1100	2.0	22.4	1.0
	OD2	A:ASP409	2.3	14.8	1.0
	F4	A:ALF1101	2.5	22.2	1.0
	F3	A:ALF1101	2.6	22.2	1.0
	CG	A:ASP409	3.0	14.8	1.0
	OD1	A:ASP409	3.1	14.8	1.0
	O	A:THR411	3.3	20.2	1.0
	F2	A:ALF1101	3.6	22.2	1.0
	OD1	A:ASP816	3.7	18.0	1.0
	OD2	A:ASP820	4.0	25.3	1.0
	C	A:THR411	4.3	20.2	1.0
	CB	A:THR411	4.4	20.2	1.0
	N	A:THR411	4.4	20.2	1.0
	CB	A:ASP409	4.5	14.8	1.0
	CA	A:THR411	4.6	20.2	1.0
	CG	A:ASP820	4.7	25.3	1.0
	OD1	A:ASP820	4.8	25.3	1.0
	NZ	A:LYS795	4.9	22.4	1.0
	CB	A:ASN819	4.9	28.8	1.0
	CG	A:ASP816	4.9	18.0	1.0
	ND2	A:ASN819	4.9	28.8	1.0

Fluorine binding site 2 out of 4 in 7vsh

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Fluorine Binding Sites List in 7vsh

Fluorine binding site 2 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1101 b:22.2 occ:1.00	F2	A:ALF1101	0.0	22.2	1.0
	AL	A:ALF1101	1.8	22.2	1.0
	F3	A:ALF1101	2.5	22.2	1.0
	F4	A:ALF1101	2.5	22.2	1.0
	N	A:GLY675	2.8	29.4	1.0
	OD1	A:ASP409	3.2	14.8	1.0
	NZ	A:LYS795	3.2	22.4	1.0
	CA	A:GLY675	3.6	29.4	1.0
	F1	A:ALF1101	3.6	22.2	1.0
	C	A:THR674	3.6	22.4	1.0
	OG1	A:THR674	3.6	22.4	1.0
	CA	A:THR674	3.7	22.4	1.0
	CE	A:LYS795	4.1	22.4	1.0
	CG	A:ASP409	4.3	14.8	1.0
	C	A:GLY675	4.3	29.4	1.0
	CB	A:THR674	4.3	22.4	1.0
	ND2	A:ASN819	4.5	28.8	1.0
	OD2	A:ASP409	4.6	14.8	1.0
	N	A:ASP676	4.7	34.2	1.0
	O	A:THR674	4.8	22.4	1.0
	O	A:LEU673	4.8	13.9	1.0
	O	A:GLY675	4.9	29.4	1.0
	CB	A:ASN819	4.9	28.8	1.0
	N	A:THR674	4.9	22.4	1.0

Fluorine binding site 3 out of 4 in 7vsh

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Fluorine Binding Sites List in 7vsh

Fluorine binding site 3 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1101 b:22.2 occ:1.00	F3	A:ALF1101	0.0	22.2	1.0
	AL	A:ALF1101	1.8	22.2	1.0
	F2	A:ALF1101	2.5	22.2	1.0
	F1	A:ALF1101	2.6	22.2	1.0
	OG1	A:THR411	3.3	20.2	1.0
	CB	A:THR411	3.3	20.2	1.0
	F4	A:ALF1101	3.6	22.2	1.0
	OD1	A:ASP409	3.7	14.8	1.0
	N	A:THR411	3.8	20.2	1.0
	MG	A:MG1100	4.0	22.4	1.0
	CA	A:THR411	4.0	20.2	1.0
	O	A:THR411	4.1	20.2	1.0
	OD2	A:ASP409	4.1	14.8	1.0
	CG	A:ASP409	4.3	14.8	1.0
	OG1	A:THR674	4.4	22.4	1.0
	CG2	A:THR411	4.5	20.2	1.0
	C	A:THR411	4.6	20.2	1.0
	N	A:GLY675	4.7	29.4	1.0
	C	A:LYS410	4.9	19.6	1.0

Fluorine binding site 4 out of 4 in 7vsh

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Fluorine Binding Sites List in 7vsh

Fluorine binding site 4 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Mono view

Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:F1101 b:22.2 occ:1.00	F4	A:ALF1101	0.0	22.2	1.0
	AL	A:ALF1101	1.8	22.2	1.0
	NZ	A:LYS795	2.4	22.4	1.0
	OD1	A:ASP409	2.4	14.8	1.0
	F1	A:ALF1101	2.5	22.2	1.0
	F2	A:ALF1101	2.5	22.2	1.0
	OD1	A:ASP820	2.9	25.3	1.0
	CG	A:ASP409	3.0	14.8	1.0
	OD2	A:ASP409	3.2	14.8	1.0
	OD2	A:ASP820	3.4	25.3	1.0
	CG	A:ASP820	3.5	25.3	1.0
	CB	A:ASN819	3.5	28.8	1.0
	F3	A:ALF1101	3.6	22.2	1.0
	CE	A:LYS795	3.8	22.4	1.0
	CB	A:ASP409	4.2	14.8	1.0
	MG	A:MG1100	4.2	22.4	1.0
	ND2	A:ASN819	4.3	28.8	1.0
	C	A:ASN819	4.4	28.8	1.0
	CG	A:ASN819	4.5	28.8	1.0
	CA	A:ASN819	4.5	28.8	1.0
	O	A:ASN819	4.5	28.8	1.0
	N	A:ASP820	4.6	25.3	1.0
	CD	A:LYS795	4.7	22.4	1.0
	CB	A:ASP820	4.8	25.3	1.0
	CA	A:ASP409	5.0	14.8	1.0

Reference:

H.Nakanishi, K.Hayashida, T.Nishizawa, A.Oshima, K.Abe. Cryo-Em of the ATP11C Flippase Reconstituted in Nanodiscs Shows A Distended Phospholipid Bilayer Inner Membrane Around Transmembrane Helix 2. J.Biol.Chem. 01498 2021.
ISSN: ESSN 1083-351X
PubMed: 34922944
DOI: 10.1016/J.JBC.2021.101498

Page generated: Fri Aug 2 14:37:01 2024

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