Fluorine in PDB 7vsh: Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Enzymatic activity of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

All present enzymatic activity of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.:
7.6.2.1;

Other elements in 7vsh:

The structure of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. (pdb code 7vsh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State., PDB code: 7vsh:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F1 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
MG A:MG1100 2.0 22.4 1.0
OD2 A:ASP409 2.3 14.8 1.0
F4 A:ALF1101 2.5 22.2 1.0
F3 A:ALF1101 2.6 22.2 1.0
CG A:ASP409 3.0 14.8 1.0
OD1 A:ASP409 3.1 14.8 1.0
O A:THR411 3.3 20.2 1.0
F2 A:ALF1101 3.6 22.2 1.0
OD1 A:ASP816 3.7 18.0 1.0
OD2 A:ASP820 4.0 25.3 1.0
C A:THR411 4.3 20.2 1.0
CB A:THR411 4.4 20.2 1.0
N A:THR411 4.4 20.2 1.0
CB A:ASP409 4.5 14.8 1.0
CA A:THR411 4.6 20.2 1.0
CG A:ASP820 4.7 25.3 1.0
OD1 A:ASP820 4.8 25.3 1.0
NZ A:LYS795 4.9 22.4 1.0
CB A:ASN819 4.9 28.8 1.0
CG A:ASP816 4.9 18.0 1.0
ND2 A:ASN819 4.9 28.8 1.0

Fluorine binding site 2 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F2 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
F3 A:ALF1101 2.5 22.2 1.0
F4 A:ALF1101 2.5 22.2 1.0
N A:GLY675 2.8 29.4 1.0
OD1 A:ASP409 3.2 14.8 1.0
NZ A:LYS795 3.2 22.4 1.0
CA A:GLY675 3.6 29.4 1.0
F1 A:ALF1101 3.6 22.2 1.0
C A:THR674 3.6 22.4 1.0
OG1 A:THR674 3.6 22.4 1.0
CA A:THR674 3.7 22.4 1.0
CE A:LYS795 4.1 22.4 1.0
CG A:ASP409 4.3 14.8 1.0
C A:GLY675 4.3 29.4 1.0
CB A:THR674 4.3 22.4 1.0
ND2 A:ASN819 4.5 28.8 1.0
OD2 A:ASP409 4.6 14.8 1.0
N A:ASP676 4.7 34.2 1.0
O A:THR674 4.8 22.4 1.0
O A:LEU673 4.8 13.9 1.0
O A:GLY675 4.9 29.4 1.0
CB A:ASN819 4.9 28.8 1.0
N A:THR674 4.9 22.4 1.0

Fluorine binding site 3 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F3 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
F2 A:ALF1101 2.5 22.2 1.0
F1 A:ALF1101 2.6 22.2 1.0
OG1 A:THR411 3.3 20.2 1.0
CB A:THR411 3.3 20.2 1.0
F4 A:ALF1101 3.6 22.2 1.0
OD1 A:ASP409 3.7 14.8 1.0
N A:THR411 3.8 20.2 1.0
MG A:MG1100 4.0 22.4 1.0
CA A:THR411 4.0 20.2 1.0
O A:THR411 4.1 20.2 1.0
OD2 A:ASP409 4.1 14.8 1.0
CG A:ASP409 4.3 14.8 1.0
OG1 A:THR674 4.4 22.4 1.0
CG2 A:THR411 4.5 20.2 1.0
C A:THR411 4.6 20.2 1.0
N A:GLY675 4.7 29.4 1.0
C A:LYS410 4.9 19.6 1.0

Fluorine binding site 4 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F4 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
NZ A:LYS795 2.4 22.4 1.0
OD1 A:ASP409 2.4 14.8 1.0
F1 A:ALF1101 2.5 22.2 1.0
F2 A:ALF1101 2.5 22.2 1.0
OD1 A:ASP820 2.9 25.3 1.0
CG A:ASP409 3.0 14.8 1.0
OD2 A:ASP409 3.2 14.8 1.0
OD2 A:ASP820 3.4 25.3 1.0
CG A:ASP820 3.5 25.3 1.0
CB A:ASN819 3.5 28.8 1.0
F3 A:ALF1101 3.6 22.2 1.0
CE A:LYS795 3.8 22.4 1.0
CB A:ASP409 4.2 14.8 1.0
MG A:MG1100 4.2 22.4 1.0
ND2 A:ASN819 4.3 28.8 1.0
C A:ASN819 4.4 28.8 1.0
CG A:ASN819 4.5 28.8 1.0
CA A:ASN819 4.5 28.8 1.0
O A:ASN819 4.5 28.8 1.0
N A:ASP820 4.6 25.3 1.0
CD A:LYS795 4.7 22.4 1.0
CB A:ASP820 4.8 25.3 1.0
CA A:ASP409 5.0 14.8 1.0

Reference:

H.Nakanishi, K.Hayashida, T.Nishizawa, A.Oshima, K.Abe. Cryo-Em of the ATP11C Flippase Reconstituted in Nanodiscs Shows A Distended Phospholipid Bilayer Inner Membrane Around Transmembrane Helix 2. J.Biol.Chem. 01498 2021.
ISSN: ESSN 1083-351X
PubMed: 34922944
DOI: 10.1016/J.JBC.2021.101498
Page generated: Thu Mar 31 03:00:37 2022

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