Fluorine in PDB 7vsh: Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

Enzymatic activity of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.

All present enzymatic activity of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.:
7.6.2.1;

Other elements in 7vsh:

The structure of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. (pdb code 7vsh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State., PDB code: 7vsh:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F1 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
MG A:MG1100 2.0 22.4 1.0
OD2 A:ASP409 2.3 14.8 1.0
F4 A:ALF1101 2.5 22.2 1.0
F3 A:ALF1101 2.6 22.2 1.0
CG A:ASP409 3.0 14.8 1.0
OD1 A:ASP409 3.1 14.8 1.0
O A:THR411 3.3 20.2 1.0
F2 A:ALF1101 3.6 22.2 1.0
OD1 A:ASP816 3.7 18.0 1.0
OD2 A:ASP820 4.0 25.3 1.0
C A:THR411 4.3 20.2 1.0
CB A:THR411 4.4 20.2 1.0
N A:THR411 4.4 20.2 1.0
CB A:ASP409 4.5 14.8 1.0
CA A:THR411 4.6 20.2 1.0
CG A:ASP820 4.7 25.3 1.0
OD1 A:ASP820 4.8 25.3 1.0
NZ A:LYS795 4.9 22.4 1.0
CB A:ASN819 4.9 28.8 1.0
CG A:ASP816 4.9 18.0 1.0
ND2 A:ASN819 4.9 28.8 1.0

Fluorine binding site 2 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F2 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
F3 A:ALF1101 2.5 22.2 1.0
F4 A:ALF1101 2.5 22.2 1.0
N A:GLY675 2.8 29.4 1.0
OD1 A:ASP409 3.2 14.8 1.0
NZ A:LYS795 3.2 22.4 1.0
CA A:GLY675 3.6 29.4 1.0
F1 A:ALF1101 3.6 22.2 1.0
C A:THR674 3.6 22.4 1.0
OG1 A:THR674 3.6 22.4 1.0
CA A:THR674 3.7 22.4 1.0
CE A:LYS795 4.1 22.4 1.0
CG A:ASP409 4.3 14.8 1.0
C A:GLY675 4.3 29.4 1.0
CB A:THR674 4.3 22.4 1.0
ND2 A:ASN819 4.5 28.8 1.0
OD2 A:ASP409 4.6 14.8 1.0
N A:ASP676 4.7 34.2 1.0
O A:THR674 4.8 22.4 1.0
O A:LEU673 4.8 13.9 1.0
O A:GLY675 4.9 29.4 1.0
CB A:ASN819 4.9 28.8 1.0
N A:THR674 4.9 22.4 1.0

Fluorine binding site 3 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F3 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
F2 A:ALF1101 2.5 22.2 1.0
F1 A:ALF1101 2.6 22.2 1.0
OG1 A:THR411 3.3 20.2 1.0
CB A:THR411 3.3 20.2 1.0
F4 A:ALF1101 3.6 22.2 1.0
OD1 A:ASP409 3.7 14.8 1.0
N A:THR411 3.8 20.2 1.0
MG A:MG1100 4.0 22.4 1.0
CA A:THR411 4.0 20.2 1.0
O A:THR411 4.1 20.2 1.0
OD2 A:ASP409 4.1 14.8 1.0
CG A:ASP409 4.3 14.8 1.0
OG1 A:THR674 4.4 22.4 1.0
CG2 A:THR411 4.5 20.2 1.0
C A:THR411 4.6 20.2 1.0
N A:GLY675 4.7 29.4 1.0
C A:LYS410 4.9 19.6 1.0

Fluorine binding site 4 out of 4 in 7vsh

Go back to Fluorine Binding Sites List in 7vsh
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase Reconstituted in the Nanodisc in E1P State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:22.2
occ:1.00
 F4 A:ALF1101 0.0 22.2 1.0
AL A:ALF1101 1.8 22.2 1.0
NZ A:LYS795 2.4 22.4 1.0
OD1 A:ASP409 2.4 14.8 1.0
F1 A:ALF1101 2.5 22.2 1.0
F2 A:ALF1101 2.5 22.2 1.0
OD1 A:ASP820 2.9 25.3 1.0
CG A:ASP409 3.0 14.8 1.0
OD2 A:ASP409 3.2 14.8 1.0
OD2 A:ASP820 3.4 25.3 1.0
CG A:ASP820 3.5 25.3 1.0
CB A:ASN819 3.5 28.8 1.0
F3 A:ALF1101 3.6 22.2 1.0
CE A:LYS795 3.8 22.4 1.0
CB A:ASP409 4.2 14.8 1.0
MG A:MG1100 4.2 22.4 1.0
ND2 A:ASN819 4.3 28.8 1.0
C A:ASN819 4.4 28.8 1.0
CG A:ASN819 4.5 28.8 1.0
CA A:ASN819 4.5 28.8 1.0
O A:ASN819 4.5 28.8 1.0
N A:ASP820 4.6 25.3 1.0
CD A:LYS795 4.7 22.4 1.0
CB A:ASP820 4.8 25.3 1.0
CA A:ASP409 5.0 14.8 1.0

Reference:

H.Nakanishi, K.Hayashida, T.Nishizawa, A.Oshima, K.Abe. Cryo-Em of the ATP11C Flippase Reconstituted in Nanodiscs Shows A Distended Phospholipid Bilayer Inner Membrane Around Transmembrane Helix 2. J.Biol.Chem. 01498 2021.
ISSN: ESSN 1083-351X
PubMed: 34922944
DOI: 10.1016/J.JBC.2021.101498
Page generated: Fri Aug 2 14:37:01 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy