Fluorine in PDB 7x3w: Cryo-Em Structure of ISW1-N1 Nucleosome

The structure of Cryo-Em Structure of ISW1-N1 Nucleosome also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of ISW1-N1 Nucleosome (pdb code 7x3w). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of ISW1-N1 Nucleosome, PDB code: 7x3w:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of ISW1-N1 Nucleosome


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of ISW1-N1 Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ K:F1202 b:216.0 occ:1.00 F1 K:BEF1202 0.0 216.0 1.0 BE K:BEF1202 1.7 216.0 1.0 F3 K:BEF1202 2.6 216.0 1.0 F2 K:BEF1202 2.8 216.0 1.0 OE2 K:GLU325 3.1 187.2 1.0 CA K:GLY584 3.4 197.6 1.0 NZ K:LYS227 3.5 225.7 1.0 NH1 K:ARG611 3.6 199.3 1.0 CB K:MET223 3.6 218.7 1.0 OE1 K:GLN607 3.6 195.6 1.0 NH2 K:ARG614 4.0 210.4 1.0 O2B K:ADP1201 4.0 221.4 1.0 N K:GLY584 4.0 197.6 1.0 CD K:GLU325 4.2 187.2 1.0 C K:GLY584 4.2 197.6 1.0 O K:GLY584 4.3 197.6 1.0 SD K:MET223 4.3 218.7 1.0 CE K:LYS227 4.4 225.7 1.0 CE K:MET223 4.4 218.7 1.0 CA K:MET223 4.6 218.7 1.0 CG K:MET223 4.6 218.7 1.0 CD K:GLN607 4.7 195.6 1.0 C K:LEU583 4.7 185.3 1.0 CZ K:ARG611 4.8 199.3 1.0 O1B K:ADP1201 4.8 221.4 1.0 N K:GLY224 4.9 220.7 1.0 PB K:ADP1201 5.0 221.4 1.0 OE1 K:GLU325 5.0 187.2 1.0 CA K:GLY353 5.0 208.8 1.0 O K:LEU583 5.0 185.3 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of ISW1-N1 Nucleosome


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of ISW1-N1 Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ K:F1202 b:216.0 occ:1.00 F2 K:BEF1202 0.0 216.0 1.0 BE K:BEF1202 1.7 216.0 1.0 NH2 K:ARG614 2.2 210.4 1.0 N K:GLY224 2.2 220.7 1.0 O1B K:ADP1201 2.5 221.4 1.0 NZ K:LYS227 2.6 225.7 1.0 O2B K:ADP1201 2.7 221.4 1.0 F3 K:BEF1202 2.7 216.0 1.0 F1 K:BEF1202 2.8 216.0 1.0 C K:MET223 3.0 218.7 1.0 PB K:ADP1201 3.1 221.4 1.0 CA K:GLY224 3.1 220.7 1.0 CB K:MET223 3.1 218.7 1.0 CA K:MET223 3.2 218.7 1.0 CZ K:ARG614 3.4 210.4 1.0 O3A K:ADP1201 3.9 221.4 1.0 CE K:MET223 3.9 218.7 1.0 CD K:ARG614 3.9 210.4 1.0 CE K:LYS227 4.0 225.7 1.0 O K:MET223 4.1 218.7 1.0 NE K:ARG614 4.1 210.4 1.0 CG K:MET223 4.3 218.7 1.0 NH1 K:ARG614 4.4 210.4 1.0 O3B K:ADP1201 4.4 221.4 1.0 C K:GLY224 4.4 220.7 1.0 SD K:MET223 4.6 218.7 1.0 N K:MET223 4.7 218.7 1.0 N K:LEU225 4.7 225.7 1.0 NH1 K:ARG611 4.8 199.3 1.0 O K:GLY584 5.0 197.6 1.0 CD K:LYS227 5.0 225.7 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of ISW1-N1 Nucleosome


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of ISW1-N1 Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ K:F1202 b:216.0 occ:1.00 F3 K:BEF1202 0.0 216.0 1.0 BE K:BEF1202 1.7 216.0 1.0 O2B K:ADP1201 2.1 221.4 1.0 NH2 K:ARG614 2.2 210.4 1.0 O K:GLY584 2.3 197.6 1.0 F1 K:BEF1202 2.6 216.0 1.0 F2 K:BEF1202 2.7 216.0 1.0 C K:GLY584 3.0 197.6 1.0 CA K:GLY584 3.1 197.6 1.0 CZ K:ARG614 3.2 210.4 1.0 PB K:ADP1201 3.6 221.4 1.0 NH1 K:ARG614 3.6 210.4 1.0 NZ K:LYS227 4.1 225.7 1.0 O1B K:ADP1201 4.1 221.4 1.0 N K:ILE585 4.2 197.6 1.0 NE K:ARG614 4.2 210.4 1.0 NH1 K:ARG611 4.3 199.3 1.0 N K:GLY584 4.4 197.6 1.0 O3A K:ADP1201 4.4 221.4 1.0 O K:ILE585 4.5 197.6 1.0 O3B K:ADP1201 4.5 221.4 1.0 CD K:ARG614 4.6 210.4 1.0 C K:ILE585 4.7 197.6 1.0 O2A K:ADP1201 4.7 221.4 1.0 CA K:ILE585 4.8 197.6 1.0 N K:GLY224 4.9 220.7 1.0

L.Lifei, C.Kangjing. ISW1-N1 Nucleosome To Be Published.