Fluorine in PDB 7zj4: Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile

The structure of Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile also contains other interesting chemical elements:

Potassium

(K)

1 atom

The binding sites of Fluorine atom in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile (pdb code 7zj4). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile, PDB code: 7zj4:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile within 5.0Å range: probe atom residue distance (Å) B Occ E:F402 b:467.4 occ:1.00 F8 E:1TU402 0.0 467.4 1.0 C6 E:1TU402 1.3 467.4 1.0 C5 E:1TU402 2.4 467.4 1.0 C1 E:1TU402 2.4 467.4 1.0 H21 E:G195 2.6 447.0 1.0 H1 E:1TU402 2.6 467.4 1.0 O9 E:1TU402 2.8 467.4 1.0 N2 E:G195 3.0 447.0 1.0 H22 E:G195 3.0 447.0 1.0 HO2' E:A194 3.0 486.9 1.0 H2' E:A194 3.3 486.9 1.0 H8 E:G173 3.3 450.9 1.0 N7 E:G173 3.4 450.9 1.0 O2' E:A194 3.4 486.9 1.0 H8 E:A194 3.5 486.9 1.0 C8 E:G173 3.5 450.9 1.0 C8 E:A194 3.5 486.9 1.0 C2 E:1TU402 3.6 467.4 1.0 H12 E:1TU402 3.7 467.4 1.0 C4 E:1TU402 3.7 467.4 1.0 C2' E:A194 3.8 486.9 1.0 N7 E:A194 3.9 486.9 1.0 N9 E:A194 4.0 486.9 1.0 C2 E:G195 4.1 447.0 1.0 O2' E:G172 4.2 432.2 1.0 C3 E:1TU402 4.2 467.4 1.0 H1 E:G195 4.2 447.0 1.0 C5 E:G173 4.4 450.9 1.0 H1' E:G172 4.4 432.2 1.0 C5 E:A194 4.5 486.9 1.0 H2' E:G173 4.5 450.9 1.0 C1' E:A194 4.5 486.9 1.0 HO2' E:G172 4.5 432.2 1.0 N1 E:G195 4.5 447.0 1.0 C4 E:A194 4.6 486.9 1.0 N9 E:G173 4.6 450.9 1.0 N12 E:1TU402 4.8 467.4 1.0 F7 E:1TU402 4.8 467.4 1.0 C10 E:1TU402 4.9 467.4 1.0 N3 E:G195 5.0 447.0 1.0

Fluorine binding site 2 out of 2 in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile within 5.0Å range: probe atom residue distance (Å) B Occ E:F402 b:467.4 occ:1.00 F7 E:1TU402 0.0 467.4 1.0 C4 E:1TU402 1.3 467.4 1.0 C3 E:1TU402 2.3 467.4 1.0 H12 E:1TU402 2.3 467.4 1.0 C5 E:1TU402 2.5 467.4 1.0 H2 E:1TU402 2.5 467.4 1.0 O2' E:G173 2.6 450.9 1.0 O2 E:U191 2.7 513.1 1.0 O9 E:1TU402 2.8 467.4 1.0 H61 E:A194 3.1 486.9 1.0 HO2' E:G173 3.2 450.9 1.0 C4 E:G173 3.3 450.9 1.0 N3 E:G173 3.5 450.9 1.0 N6 E:A194 3.5 486.9 1.0 N9 E:G173 3.5 450.9 1.0 C2 E:U191 3.6 513.1 1.0 C2' E:G173 3.6 450.9 1.0 C6 E:1TU402 3.7 467.4 1.0 C2 E:1TU402 3.7 467.4 1.0 H62 E:A194 3.8 486.9 1.0 H2' E:G173 3.8 450.9 1.0 C5 E:G173 3.8 450.9 1.0 C1' E:G173 3.9 450.9 1.0 H1' E:U191 3.9 513.1 1.0 H1' E:G173 3.9 450.9 1.0 C2 E:G173 4.0 450.9 1.0 H3 E:U191 4.1 513.1 1.0 C8 E:G173 4.1 450.9 1.0 HO2' E:U191 4.2 513.1 1.0 C6 E:A194 4.2 486.9 1.0 C1 E:1TU402 4.2 467.4 1.0 N3 E:U191 4.2 513.1 1.0 N7 E:G173 4.3 450.9 1.0 N7 E:A194 4.3 486.9 1.0 O2' E:U191 4.4 513.1 1.0 C6 E:G173 4.4 450.9 1.0 N1 E:G173 4.4 450.9 1.0 N1 E:U191 4.5 513.1 1.0 C5 E:A194 4.5 486.9 1.0 C1' E:U191 4.6 513.1 1.0 H8 E:G173 4.6 450.9 1.0 N2 E:G173 4.7 450.9 1.0 H22 E:G173 4.8 450.9 1.0 F8 E:1TU402 4.8 467.4 1.0 C10 E:1TU402 4.9 467.4 1.0 H3 E:1TU402 4.9 467.4 1.0

E.K.S.Mcrae, N.S.Vallina, B.K.Hansen, A.Boussebayle, E.S.Andersen. Structure Determination of Pepper-Broccoli Fret Pair By Rna Origami Scaffolding To Be Published.