Fluorine in PDB 7zj4: Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile
Other elements in 7zj4:
The structure of Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile
(pdb code 7zj4). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the
Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile, PDB code: 7zj4:
Jump to Fluorine binding site number:
1;
2;
Fluorine binding site 1 out
of 2 in 7zj4
Go back to
Fluorine Binding Sites List in 7zj4
Fluorine binding site 1 out
of 2 in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F402
b:467.4
occ:1.00
|
F8
|
E:1TU402
|
0.0
|
467.4
|
1.0
|
C6
|
E:1TU402
|
1.3
|
467.4
|
1.0
|
C5
|
E:1TU402
|
2.4
|
467.4
|
1.0
|
C1
|
E:1TU402
|
2.4
|
467.4
|
1.0
|
H21
|
E:G195
|
2.6
|
447.0
|
1.0
|
H1
|
E:1TU402
|
2.6
|
467.4
|
1.0
|
O9
|
E:1TU402
|
2.8
|
467.4
|
1.0
|
N2
|
E:G195
|
3.0
|
447.0
|
1.0
|
H22
|
E:G195
|
3.0
|
447.0
|
1.0
|
HO2'
|
E:A194
|
3.0
|
486.9
|
1.0
|
H2'
|
E:A194
|
3.3
|
486.9
|
1.0
|
H8
|
E:G173
|
3.3
|
450.9
|
1.0
|
N7
|
E:G173
|
3.4
|
450.9
|
1.0
|
O2'
|
E:A194
|
3.4
|
486.9
|
1.0
|
H8
|
E:A194
|
3.5
|
486.9
|
1.0
|
C8
|
E:G173
|
3.5
|
450.9
|
1.0
|
C8
|
E:A194
|
3.5
|
486.9
|
1.0
|
C2
|
E:1TU402
|
3.6
|
467.4
|
1.0
|
H12
|
E:1TU402
|
3.7
|
467.4
|
1.0
|
C4
|
E:1TU402
|
3.7
|
467.4
|
1.0
|
C2'
|
E:A194
|
3.8
|
486.9
|
1.0
|
N7
|
E:A194
|
3.9
|
486.9
|
1.0
|
N9
|
E:A194
|
4.0
|
486.9
|
1.0
|
C2
|
E:G195
|
4.1
|
447.0
|
1.0
|
O2'
|
E:G172
|
4.2
|
432.2
|
1.0
|
C3
|
E:1TU402
|
4.2
|
467.4
|
1.0
|
H1
|
E:G195
|
4.2
|
447.0
|
1.0
|
C5
|
E:G173
|
4.4
|
450.9
|
1.0
|
H1'
|
E:G172
|
4.4
|
432.2
|
1.0
|
C5
|
E:A194
|
4.5
|
486.9
|
1.0
|
H2'
|
E:G173
|
4.5
|
450.9
|
1.0
|
C1'
|
E:A194
|
4.5
|
486.9
|
1.0
|
HO2'
|
E:G172
|
4.5
|
432.2
|
1.0
|
N1
|
E:G195
|
4.5
|
447.0
|
1.0
|
C4
|
E:A194
|
4.6
|
486.9
|
1.0
|
N9
|
E:G173
|
4.6
|
450.9
|
1.0
|
N12
|
E:1TU402
|
4.8
|
467.4
|
1.0
|
F7
|
E:1TU402
|
4.8
|
467.4
|
1.0
|
C10
|
E:1TU402
|
4.9
|
467.4
|
1.0
|
N3
|
E:G195
|
5.0
|
447.0
|
1.0
|
|
Fluorine binding site 2 out
of 2 in 7zj4
Go back to
Fluorine Binding Sites List in 7zj4
Fluorine binding site 2 out
of 2 in the Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Ligand Bound State of A Brocolli-Pepper Aptamer Fret Tile within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F402
b:467.4
occ:1.00
|
F7
|
E:1TU402
|
0.0
|
467.4
|
1.0
|
C4
|
E:1TU402
|
1.3
|
467.4
|
1.0
|
C3
|
E:1TU402
|
2.3
|
467.4
|
1.0
|
H12
|
E:1TU402
|
2.3
|
467.4
|
1.0
|
C5
|
E:1TU402
|
2.5
|
467.4
|
1.0
|
H2
|
E:1TU402
|
2.5
|
467.4
|
1.0
|
O2'
|
E:G173
|
2.6
|
450.9
|
1.0
|
O2
|
E:U191
|
2.7
|
513.1
|
1.0
|
O9
|
E:1TU402
|
2.8
|
467.4
|
1.0
|
H61
|
E:A194
|
3.1
|
486.9
|
1.0
|
HO2'
|
E:G173
|
3.2
|
450.9
|
1.0
|
C4
|
E:G173
|
3.3
|
450.9
|
1.0
|
N3
|
E:G173
|
3.5
|
450.9
|
1.0
|
N6
|
E:A194
|
3.5
|
486.9
|
1.0
|
N9
|
E:G173
|
3.5
|
450.9
|
1.0
|
C2
|
E:U191
|
3.6
|
513.1
|
1.0
|
C2'
|
E:G173
|
3.6
|
450.9
|
1.0
|
C6
|
E:1TU402
|
3.7
|
467.4
|
1.0
|
C2
|
E:1TU402
|
3.7
|
467.4
|
1.0
|
H62
|
E:A194
|
3.8
|
486.9
|
1.0
|
H2'
|
E:G173
|
3.8
|
450.9
|
1.0
|
C5
|
E:G173
|
3.8
|
450.9
|
1.0
|
C1'
|
E:G173
|
3.9
|
450.9
|
1.0
|
H1'
|
E:U191
|
3.9
|
513.1
|
1.0
|
H1'
|
E:G173
|
3.9
|
450.9
|
1.0
|
C2
|
E:G173
|
4.0
|
450.9
|
1.0
|
H3
|
E:U191
|
4.1
|
513.1
|
1.0
|
C8
|
E:G173
|
4.1
|
450.9
|
1.0
|
HO2'
|
E:U191
|
4.2
|
513.1
|
1.0
|
C6
|
E:A194
|
4.2
|
486.9
|
1.0
|
C1
|
E:1TU402
|
4.2
|
467.4
|
1.0
|
N3
|
E:U191
|
4.2
|
513.1
|
1.0
|
N7
|
E:G173
|
4.3
|
450.9
|
1.0
|
N7
|
E:A194
|
4.3
|
486.9
|
1.0
|
O2'
|
E:U191
|
4.4
|
513.1
|
1.0
|
C6
|
E:G173
|
4.4
|
450.9
|
1.0
|
N1
|
E:G173
|
4.4
|
450.9
|
1.0
|
N1
|
E:U191
|
4.5
|
513.1
|
1.0
|
C5
|
E:A194
|
4.5
|
486.9
|
1.0
|
C1'
|
E:U191
|
4.6
|
513.1
|
1.0
|
H8
|
E:G173
|
4.6
|
450.9
|
1.0
|
N2
|
E:G173
|
4.7
|
450.9
|
1.0
|
H22
|
E:G173
|
4.8
|
450.9
|
1.0
|
F8
|
E:1TU402
|
4.8
|
467.4
|
1.0
|
C10
|
E:1TU402
|
4.9
|
467.4
|
1.0
|
H3
|
E:1TU402
|
4.9
|
467.4
|
1.0
|
|
Reference:
E.K.S.Mcrae,
N.S.Vallina,
B.K.Hansen,
A.Boussebayle,
E.S.Andersen.
Structure Determination of Pepper-Broccoli Fret Pair By Rna Origami Scaffolding To Be Published.
Page generated: Fri Aug 2 16:11:29 2024
|