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Fluorine in PDB 7zl3: Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition

Other elements in 7zl3:

The structure of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition also contains other interesting chemical elements:

Bromine (Br) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition (pdb code 7zl3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition, PDB code: 7zl3:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7zl3

Go back to Fluorine Binding Sites List in 7zl3
Fluorine binding site 1 out of 6 in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F2

b:182.4
occ:1.00
FAC E:3EG2 0.0 182.4 1.0
CG E:3EG2 1.4 182.4 1.0
FAE E:3EG2 2.3 182.4 1.0
FAD E:3EG2 2.4 182.4 1.0
CB E:3EG2 2.5 182.4 1.0
O3 E:JMO1 3.4 182.4 1.0
CA E:3EG2 3.4 182.4 1.0
C11 E:JMO1 3.7 182.4 1.0
N E:3EG2 3.7 182.4 1.0
CG A:GLN126 4.0 213.6 1.0
CB A:VAL129 4.1 219.9 1.0
CG1 A:VAL129 4.2 219.9 1.0
CA A:GLN126 4.2 213.6 1.0
O2 E:JMO1 4.5 182.4 1.0
CB A:GLN126 4.5 213.6 1.0
O A:GLN126 4.5 213.6 1.0
CG2 A:VAL129 4.7 219.9 1.0
O E:LEU6 4.7 182.4 1.0
C12 E:JMO1 4.8 182.4 1.0
C E:3EG2 4.9 182.4 1.0
C A:GLN126 4.9 213.6 1.0
NE2 A:GLN126 5.0 213.6 1.0

Fluorine binding site 2 out of 6 in 7zl3

Go back to Fluorine Binding Sites List in 7zl3
Fluorine binding site 2 out of 6 in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F2

b:182.4
occ:1.00
FAD E:3EG2 0.0 182.4 1.0
CG E:3EG2 1.4 182.4 1.0
FAE E:3EG2 2.3 182.4 1.0
FAC E:3EG2 2.4 182.4 1.0
CB E:3EG2 2.5 182.4 1.0
CG1 A:VAL129 3.0 219.9 1.0
CB A:VAL129 3.7 219.9 1.0
CA E:3EG2 3.7 182.4 1.0
CG2 A:VAL129 4.2 219.9 1.0
C E:3EG2 4.7 182.4 1.0
O E:3EG2 4.7 182.4 1.0
N E:3EG2 4.8 182.4 1.0
O3 E:JMO1 5.0 182.4 1.0

Fluorine binding site 3 out of 6 in 7zl3

Go back to Fluorine Binding Sites List in 7zl3
Fluorine binding site 3 out of 6 in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F2

b:182.4
occ:1.00
FAE E:3EG2 0.0 182.4 1.0
CG E:3EG2 1.4 182.4 1.0
FAD E:3EG2 2.3 182.4 1.0
FAC E:3EG2 2.3 182.4 1.0
CB E:3EG2 2.5 182.4 1.0
CA E:3EG2 2.7 182.4 1.0
O3 E:JMO1 3.1 182.4 1.0
CD1 E:MLE3 3.2 182.4 1.0
N E:3EG2 3.6 182.4 1.0
C11 E:JMO1 3.8 182.4 1.0
C E:3EG2 3.9 182.4 1.0
CG E:MLE3 4.5 182.4 1.0
O E:3EG2 4.5 182.4 1.0
CD2 E:MLE3 4.6 182.4 1.0
CG1 A:VAL129 4.7 219.9 1.0
CA E:MLE3 4.7 182.4 1.0
N E:MLE3 4.8 182.4 1.0

Fluorine binding site 4 out of 6 in 7zl3

Go back to Fluorine Binding Sites List in 7zl3
Fluorine binding site 4 out of 6 in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F4

b:182.4
occ:1.00
FAC E:3EG4 0.0 182.4 1.0
CG E:3EG4 1.4 182.4 1.0
FAD E:3EG4 2.4 182.4 1.0
FAE E:3EG4 2.4 182.4 1.0
CB E:3EG4 2.5 182.4 1.0
N E:3EG4 2.7 182.4 1.0
OD1 A:ASN299 3.1 134.6 1.0
CA E:3EG4 3.1 182.4 1.0
CB A:SER298 3.2 138.2 1.0
C E:MLE3 3.6 182.4 1.0
CB E:MLE3 3.7 182.4 1.0
CE A:MET64 3.8 168.0 1.0
OG A:SER298 4.0 138.2 1.0
CG A:ASN299 4.2 134.6 1.0
N A:ASN299 4.2 134.6 1.0
CA E:MLE3 4.3 182.4 1.0
O A:ALA295 4.3 119.0 1.0
C A:SER298 4.3 138.2 1.0
O E:MLE3 4.3 182.4 1.0
CG A:MET64 4.3 168.0 1.0
CA A:SER298 4.4 138.2 1.0
C E:3EG4 4.5 182.4 1.0
CA A:ASN299 4.7 134.6 1.0
O E:3EG4 4.8 182.4 1.0
SD A:MET64 4.8 168.0 1.0
CD1 A:ILE67 4.9 162.0 1.0
O A:SER298 5.0 138.2 1.0
ND2 A:ASN299 5.0 134.6 1.0
CG E:MLE3 5.0 182.4 1.0

Fluorine binding site 5 out of 6 in 7zl3

Go back to Fluorine Binding Sites List in 7zl3
Fluorine binding site 5 out of 6 in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F4

b:182.4
occ:1.00
FAD E:3EG4 0.0 182.4 1.0
CG E:3EG4 1.4 182.4 1.0
FAE E:3EG4 2.3 182.4 1.0
FAC E:3EG4 2.4 182.4 1.0
CB E:3EG4 2.5 182.4 1.0
CB A:SER298 3.2 138.2 1.0
CD1 A:ILE67 3.2 162.0 1.0
OG A:SER298 3.2 138.2 1.0
CA A:ALA295 3.6 119.0 1.0
CA E:3EG4 3.9 182.4 1.0
O A:ALA295 4.0 119.0 1.0
CB A:ALA295 4.1 119.0 1.0
C A:ALA295 4.3 119.0 1.0
O A:SER294 4.3 109.1 1.0
N E:3EG4 4.3 182.4 1.0
CG A:MET64 4.4 168.0 1.0
CG1 A:ILE67 4.4 162.0 1.0
N A:ALA295 4.4 119.0 1.0
CA A:SER298 4.6 138.2 1.0
OD1 A:ASN299 4.7 134.6 1.0
C A:SER294 4.7 109.1 1.0
C2 E:JMX5 4.9 182.4 1.0

Fluorine binding site 6 out of 6 in 7zl3

Go back to Fluorine Binding Sites List in 7zl3
Fluorine binding site 6 out of 6 in the Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F4

b:182.4
occ:1.00
FAE E:3EG4 0.0 182.4 1.0
CG E:3EG4 1.4 182.4 1.0
FAD E:3EG4 2.3 182.4 1.0
FAC E:3EG4 2.4 182.4 1.0
CB E:3EG4 2.5 182.4 1.0
CA E:3EG4 2.8 182.4 1.0
N E:3EG4 3.2 182.4 1.0
CD1 A:ILE67 3.2 162.0 1.0
CE A:MET64 3.5 168.0 1.0
CG A:MET64 3.6 168.0 1.0
C E:MLE3 3.6 182.4 1.0
O E:MLE3 3.6 182.4 1.0
SD A:MET64 3.8 168.0 1.0
C15 E:JMO1 4.1 182.4 1.0
N3 E:JMO1 4.3 182.4 1.0
C13 E:JMO1 4.4 182.4 1.0
C14 E:JMO1 4.4 182.4 1.0
C E:3EG4 4.4 182.4 1.0
CG1 A:ILE67 4.5 162.0 1.0
NE1 E:JMX5 4.5 182.4 1.0
C2 E:JMX5 4.5 182.4 1.0
CD1 E:JMX5 4.5 182.4 1.0
CA E:MLE3 4.8 182.4 1.0
CB A:SER298 4.8 138.2 1.0
CB A:MET64 4.8 168.0 1.0
CB E:MLE3 5.0 182.4 1.0

Reference:

S.Rehan, V.Paavilainen O. Signal Peptide Mimicry Primes SEC61 For Client-Selective Inhibition Nat.Chem.Biol. 2023.
ISSN: ESSN 1552-4469
Page generated: Fri Aug 2 16:17:00 2024

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