Fluorine in PDB 8fh9: Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007
Enzymatic activity of Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007
Protein crystallography data
The structure of Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007, PDB code: 8fh9
was solved by
R.Arenas,
D.K.Wilson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.69 /
1.70
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.179,
46.888,
47.296,
75.48,
67.37,
76.63
|
R / Rfree (%)
|
15 /
18.2
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007
(pdb code 8fh9). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007, PDB code: 8fh9:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 8fh9
Go back to
Fluorine Binding Sites List in 8fh9
Fluorine binding site 1 out
of 3 in the Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:21.5
occ:1.00
|
F3
|
A:XYK402
|
0.0
|
21.5
|
1.0
|
C19
|
A:XYK402
|
1.4
|
18.3
|
1.0
|
F1
|
A:XYK402
|
2.1
|
19.3
|
1.0
|
F2
|
A:XYK402
|
2.2
|
20.4
|
1.0
|
H16
|
A:XYK402
|
2.4
|
15.9
|
1.0
|
C15
|
A:XYK402
|
2.4
|
14.9
|
1.0
|
HD2
|
A:PRO310
|
2.5
|
12.5
|
1.0
|
C16
|
A:XYK402
|
2.7
|
16.7
|
1.0
|
HD1
|
A:TYR309
|
2.9
|
15.6
|
1.0
|
HE1
|
A:TYR309
|
3.0
|
17.0
|
1.0
|
CD
|
A:PRO310
|
3.2
|
12.7
|
1.0
|
CD1
|
A:TYR309
|
3.3
|
15.5
|
1.0
|
HD3
|
A:PRO310
|
3.3
|
12.5
|
1.0
|
CE1
|
A:TYR309
|
3.3
|
16.9
|
1.0
|
HE3
|
A:TRP111
|
3.6
|
12.8
|
1.0
|
HZ3
|
A:TRP111
|
3.6
|
13.2
|
1.0
|
C14
|
A:XYK402
|
3.7
|
15.1
|
1.0
|
HG3
|
A:PRO310
|
3.7
|
11.7
|
1.0
|
HE2
|
A:PHE311
|
3.7
|
15.6
|
1.0
|
HG2
|
A:PRO310
|
3.8
|
11.7
|
1.0
|
CG
|
A:PRO310
|
3.8
|
11.8
|
1.0
|
HA
|
A:TYR309
|
3.9
|
12.5
|
1.0
|
CZ3
|
A:TRP111
|
3.9
|
13.4
|
1.0
|
CE3
|
A:TRP111
|
3.9
|
13.2
|
1.0
|
H14
|
A:XYK402
|
4.0
|
14.8
|
1.0
|
HB2
|
A:CYS303
|
4.0
|
23.4
|
1.0
|
HD2
|
A:PHE311
|
4.1
|
15.6
|
1.0
|
C12
|
A:XYK402
|
4.1
|
15.2
|
1.0
|
CE2
|
A:PHE311
|
4.1
|
15.9
|
1.0
|
HG21
|
A:THR113
|
4.2
|
10.8
|
1.0
|
H
|
A:LEU300
|
4.2
|
24.7
|
1.0
|
CD2
|
A:PHE311
|
4.2
|
15.9
|
1.0
|
HB3
|
A:CYS303
|
4.2
|
23.3
|
1.0
|
CG
|
A:TYR309
|
4.3
|
14.2
|
1.0
|
HG22
|
A:THR113
|
4.3
|
10.7
|
1.0
|
CZ
|
A:TYR309
|
4.4
|
19.0
|
1.0
|
HG
|
A:CYS303
|
4.5
|
27.1
|
0.0
|
HA
|
A:ALA299
|
4.5
|
21.1
|
1.0
|
N
|
A:PRO310
|
4.5
|
12.6
|
1.0
|
CB
|
A:CYS303
|
4.6
|
24.6
|
1.0
|
CA
|
A:TYR309
|
4.7
|
12.8
|
1.0
|
CG2
|
A:THR113
|
4.7
|
10.6
|
1.0
|
HG1
|
A:THR113
|
4.8
|
11.2
|
0.0
|
C13
|
A:XYK402
|
4.8
|
13.8
|
1.0
|
HH
|
A:TYR309
|
4.9
|
21.0
|
0.0
|
CD2
|
A:TRP111
|
4.9
|
11.4
|
1.0
|
C11
|
A:XYK402
|
4.9
|
13.5
|
1.0
|
HB3
|
A:TRP111
|
5.0
|
9.5
|
1.0
|
CZ
|
A:PHE311
|
5.0
|
14.9
|
1.0
|
CH2
|
A:TRP111
|
5.0
|
12.7
|
1.0
|
CB
|
A:TYR309
|
5.0
|
13.2
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 8fh9
Go back to
Fluorine Binding Sites List in 8fh9
Fluorine binding site 2 out
of 3 in the Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:19.3
occ:1.00
|
F1
|
A:XYK402
|
0.0
|
19.3
|
1.0
|
C19
|
A:XYK402
|
1.4
|
18.3
|
1.0
|
F3
|
A:XYK402
|
2.1
|
21.5
|
1.0
|
F2
|
A:XYK402
|
2.2
|
20.4
|
1.0
|
C15
|
A:XYK402
|
2.3
|
14.9
|
1.0
|
HE3
|
A:TRP111
|
2.6
|
12.8
|
1.0
|
HD3
|
A:PRO310
|
2.8
|
12.5
|
1.0
|
HG22
|
A:THR113
|
2.8
|
10.7
|
1.0
|
H14
|
A:XYK402
|
2.8
|
14.8
|
1.0
|
HG1
|
A:THR113
|
2.8
|
11.2
|
0.0
|
C14
|
A:XYK402
|
2.9
|
15.1
|
1.0
|
HB3
|
A:TRP111
|
3.1
|
9.5
|
1.0
|
HG21
|
A:THR113
|
3.1
|
10.8
|
1.0
|
HD2
|
A:PRO310
|
3.1
|
12.5
|
1.0
|
OG1
|
A:THR113
|
3.2
|
11.2
|
1.0
|
CE3
|
A:TRP111
|
3.2
|
13.2
|
1.0
|
CD
|
A:PRO310
|
3.3
|
12.7
|
1.0
|
HD2
|
A:PRO112
|
3.3
|
8.8
|
1.0
|
CG2
|
A:THR113
|
3.3
|
10.6
|
1.0
|
C16
|
A:XYK402
|
3.4
|
16.7
|
1.0
|
HG3
|
A:PRO310
|
3.4
|
11.7
|
1.0
|
H16
|
A:XYK402
|
3.6
|
15.9
|
1.0
|
HG2
|
A:PRO112
|
3.8
|
9.7
|
1.0
|
HA
|
A:TYR309
|
3.8
|
12.5
|
1.0
|
H
|
A:THR113
|
3.9
|
10.4
|
1.0
|
CG
|
A:PRO310
|
3.9
|
11.8
|
1.0
|
CB
|
A:THR113
|
3.9
|
11.0
|
1.0
|
CD2
|
A:TRP111
|
3.9
|
11.4
|
1.0
|
CZ3
|
A:TRP111
|
4.0
|
13.4
|
1.0
|
CB
|
A:TRP111
|
4.0
|
9.4
|
1.0
|
HZ3
|
A:TRP111
|
4.0
|
13.2
|
1.0
|
HD1
|
A:TYR309
|
4.1
|
15.6
|
1.0
|
CD
|
A:PRO112
|
4.2
|
8.4
|
1.0
|
HG23
|
A:THR113
|
4.2
|
10.7
|
1.0
|
C13
|
A:XYK402
|
4.2
|
13.8
|
1.0
|
HG2
|
A:PRO310
|
4.3
|
11.7
|
1.0
|
CG
|
A:TRP111
|
4.3
|
10.3
|
1.0
|
HB2
|
A:TRP111
|
4.4
|
9.5
|
1.0
|
CG
|
A:PRO112
|
4.4
|
10.0
|
1.0
|
N
|
A:THR113
|
4.5
|
10.2
|
1.0
|
C12
|
A:XYK402
|
4.6
|
15.2
|
1.0
|
HB
|
A:THR113
|
4.6
|
10.7
|
1.0
|
CD1
|
A:TYR309
|
4.6
|
15.5
|
1.0
|
HG
|
A:CYS303
|
4.7
|
27.1
|
0.0
|
N
|
A:PRO310
|
4.7
|
12.6
|
1.0
|
HB3
|
A:CYS303
|
4.7
|
23.3
|
1.0
|
N
|
A:PRO112
|
4.7
|
8.6
|
1.0
|
HG3
|
A:PRO112
|
4.8
|
9.7
|
1.0
|
CA
|
A:TYR309
|
4.8
|
12.8
|
1.0
|
O
|
A:ASP308
|
4.8
|
10.6
|
1.0
|
H13
|
A:XYK402
|
4.8
|
14.1
|
1.0
|
C11
|
A:XYK402
|
4.9
|
13.5
|
1.0
|
HD3
|
A:PRO112
|
4.9
|
8.8
|
1.0
|
CA
|
A:THR113
|
4.9
|
9.8
|
1.0
|
HE1
|
A:TYR309
|
5.0
|
17.0
|
1.0
|
HA
|
A:TRP111
|
5.0
|
9.0
|
1.0
|
CA
|
A:TRP111
|
5.0
|
8.8
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 8fh9
Go back to
Fluorine Binding Sites List in 8fh9
Fluorine binding site 3 out
of 3 in the Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:20.4
occ:1.00
|
F2
|
A:XYK402
|
0.0
|
20.4
|
1.0
|
C19
|
A:XYK402
|
1.4
|
18.3
|
1.0
|
F3
|
A:XYK402
|
2.2
|
21.5
|
1.0
|
F1
|
A:XYK402
|
2.2
|
19.3
|
1.0
|
C15
|
A:XYK402
|
2.3
|
14.9
|
1.0
|
HB3
|
A:CYS303
|
2.5
|
23.3
|
1.0
|
HG21
|
A:THR113
|
2.5
|
10.8
|
1.0
|
HD1
|
A:TYR309
|
2.7
|
15.6
|
1.0
|
HG
|
A:CYS303
|
2.9
|
27.1
|
0.0
|
HB2
|
A:CYS303
|
3.0
|
23.4
|
1.0
|
H14
|
A:XYK402
|
3.0
|
14.8
|
1.0
|
C14
|
A:XYK402
|
3.1
|
15.1
|
1.0
|
CB
|
A:CYS303
|
3.1
|
24.6
|
1.0
|
CG2
|
A:THR113
|
3.3
|
10.6
|
1.0
|
C16
|
A:XYK402
|
3.3
|
16.7
|
1.0
|
HG22
|
A:THR113
|
3.4
|
10.7
|
1.0
|
H16
|
A:XYK402
|
3.5
|
15.9
|
1.0
|
CD1
|
A:TYR309
|
3.5
|
15.5
|
1.0
|
OG1
|
A:THR113
|
3.6
|
11.2
|
1.0
|
SG
|
A:CYS303
|
3.7
|
27.2
|
1.0
|
HA
|
A:TYR309
|
3.7
|
12.5
|
1.0
|
HG1
|
A:THR113
|
3.7
|
11.2
|
0.0
|
HD2
|
A:PRO310
|
3.7
|
12.5
|
1.0
|
HE1
|
A:TYR309
|
3.8
|
17.0
|
1.0
|
HD3
|
A:PRO310
|
3.9
|
12.5
|
1.0
|
CB
|
A:THR113
|
4.0
|
11.0
|
1.0
|
HG23
|
A:THR113
|
4.1
|
10.7
|
1.0
|
CE1
|
A:TYR309
|
4.1
|
16.9
|
1.0
|
O
|
A:CYS303
|
4.1
|
15.2
|
1.0
|
HE1
|
A:PHE115
|
4.2
|
11.5
|
1.0
|
HB
|
A:THR113
|
4.2
|
10.7
|
1.0
|
CD
|
A:PRO310
|
4.3
|
12.7
|
1.0
|
C13
|
A:XYK402
|
4.3
|
13.8
|
1.0
|
HB3
|
A:HIS306
|
4.4
|
13.1
|
1.0
|
HZ
|
A:PHE115
|
4.5
|
11.6
|
1.0
|
CA
|
A:CYS303
|
4.5
|
18.5
|
1.0
|
HB2
|
A:TYR309
|
4.5
|
13.3
|
1.0
|
C12
|
A:XYK402
|
4.6
|
15.2
|
1.0
|
C
|
A:CYS303
|
4.6
|
18.0
|
1.0
|
CG
|
A:TYR309
|
4.6
|
14.2
|
1.0
|
CA
|
A:TYR309
|
4.6
|
12.8
|
1.0
|
HE3
|
A:TRP111
|
4.7
|
12.8
|
1.0
|
HB2
|
A:HIS306
|
4.8
|
13.2
|
1.0
|
CB
|
A:TYR309
|
4.8
|
13.2
|
1.0
|
HB3
|
A:TRP111
|
4.9
|
9.5
|
1.0
|
HA
|
A:CYS303
|
4.9
|
19.8
|
1.0
|
C11
|
A:XYK402
|
4.9
|
13.5
|
1.0
|
CE1
|
A:PHE115
|
4.9
|
11.2
|
1.0
|
HB2
|
A:LEU300
|
5.0
|
24.8
|
1.0
|
|
Reference:
R.Arenas,
D.K.Wilson.
Crystal Structure of Aldose Reductase (AKR1B1) Complexed with Nadp+ and at-007 To Be Published.
Page generated: Fri Aug 2 19:05:11 2024
|