Fluorine in PDB 8j04: Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 (pdb code 8j04). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2, PDB code: 8j04:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 8j04

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Fluorine binding site 1 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F801

b:84.3
occ:1.00
F25 A:9MF801 0.0 84.3 1.0
C22 A:9MF801 1.4 73.3 1.0
C23 A:9MF801 2.4 70.7 1.0
C21 A:9MF801 2.4 70.8 1.0
HE1 B:PHE104 2.5 89.7 1.0
H231 A:9MF801 2.5 66.4 1.0
H211 A:9MF801 2.6 66.4 1.0
CE1 B:PHE104 2.9 89.5 1.0
HD1 B:PHE104 3.4 89.7 1.0
HE1 A:PHE240 3.4 65.7 1.0
HZ B:PHE100 3.4 99.5 1.0
CD1 B:PHE104 3.4 90.3 1.0
C24 A:9MF801 3.6 67.5 1.0
C20 A:9MF801 3.6 60.4 1.0
HD1 A:PHE240 3.7 65.8 1.0
CZ B:PHE104 3.7 89.2 1.0
CE1 A:PHE240 3.8 64.6 1.0
HZ B:PHE104 3.9 89.6 1.0
CD1 A:PHE240 3.9 67.7 1.0
H231 B:9MF801 4.1 93.7 1.0
C19 A:9MF801 4.1 52.1 1.0
H241 B:9MF801 4.2 95.3 1.0
CZ B:PHE100 4.3 99.7 1.0
H241 A:9MF801 4.4 65.5 1.0
H201 A:9MF801 4.4 65.8 1.0
CG B:PHE104 4.5 89.7 1.0
CZ A:PHE240 4.7 65.7 1.0
C23 B:9MF801 4.7 92.3 1.0
CE2 B:PHE104 4.7 90.8 1.0
C24 B:9MF801 4.7 99.3 1.0
HE2 B:PHE100 4.8 99.2 1.0
CG A:PHE240 4.9 62.5 1.0
HZ A:PHE240 4.9 65.5 1.0

Fluorine binding site 2 out of 8 in 8j04

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Fluorine binding site 2 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F802

b:102.2
occ:1.00
F25 A:9MF802 0.0 102.2 1.0
C22 A:9MF802 1.4 96.6 1.0
C23 A:9MF802 2.4 92.8 1.0
C21 A:9MF802 2.4 94.1 1.0
H132 G:9MF802 2.4 65.7 1.0
H231 A:9MF802 2.5 94.3 1.0
H211 A:9MF802 2.6 94.5 1.0
H051 G:9MF802 3.0 65.5 1.0
C13 G:9MF802 3.4 62.9 1.0
C24 A:9MF802 3.6 99.9 1.0
C20 A:9MF802 3.6 93.3 1.0
H131 G:9MF802 3.8 64.7 1.0
C05 G:9MF802 3.8 57.5 1.0
H133 G:9MF802 3.9 65.3 1.0
H181 G:9MF802 4.0 66.5 1.0
C06 G:9MF802 4.1 57.2 1.0
C19 A:9MF802 4.1 102.8 1.0
H241 A:9MF802 4.4 95.8 1.0
H201 A:9MF802 4.4 94.9 1.0
C20 G:9MF802 4.5 60.0 1.0
C19 G:9MF802 4.5 52.7 1.0
H201 G:9MF802 4.6 66.2 1.0
CD2 G:TRP236 4.6 53.0 1.0
C18 G:9MF802 4.7 69.8 1.0
CE2 G:TRP236 4.8 52.4 1.0
CE3 G:TRP236 4.8 66.4 1.0
CZ3 G:TRP236 5.0 63.5 1.0
C04 G:9MF802 5.0 56.8 1.0
C24 G:9MF802 5.0 68.1 1.0
C21 G:9MF802 5.0 70.8 1.0
CZ2 G:TRP236 5.0 61.3 1.0

Fluorine binding site 3 out of 8 in 8j04

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Fluorine binding site 3 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F801

b:102.1
occ:1.00
F25 B:9MF801 0.0 102.1 1.0
C22 B:9MF801 1.4 96.5 1.0
C23 B:9MF801 2.4 92.3 1.0
C21 B:9MF801 2.4 93.8 1.0
H132 A:9MF801 2.4 65.3 1.0
H231 B:9MF801 2.5 93.7 1.0
H211 B:9MF801 2.6 94.0 1.0
H051 A:9MF801 3.0 64.9 1.0
C13 A:9MF801 3.4 63.4 1.0
C24 B:9MF801 3.6 99.3 1.0
C20 B:9MF801 3.6 92.9 1.0
H131 A:9MF801 3.7 64.1 1.0
C05 A:9MF801 3.8 56.3 1.0
H133 A:9MF801 3.9 64.8 1.0
H181 A:9MF801 4.0 66.1 1.0
C06 A:9MF801 4.1 56.0 1.0
C19 B:9MF801 4.1 102.4 1.0
H241 B:9MF801 4.4 95.3 1.0
H201 B:9MF801 4.4 94.4 1.0
C19 A:9MF801 4.5 52.1 1.0
C20 A:9MF801 4.5 60.4 1.0
H201 A:9MF801 4.6 65.8 1.0
CD2 A:TRP236 4.6 54.4 1.0
C18 A:9MF801 4.7 69.4 1.0
CE2 A:TRP236 4.8 53.4 1.0
CE3 A:TRP236 4.8 67.2 1.0
C04 A:9MF801 5.0 56.0 1.0
CZ3 A:TRP236 5.0 65.2 1.0
C24 A:9MF801 5.0 67.5 1.0
CZ2 A:TRP236 5.0 61.3 1.0
C21 A:9MF801 5.0 70.8 1.0

Fluorine binding site 4 out of 8 in 8j04

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Fluorine binding site 4 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F802

b:84.8
occ:1.00
F25 B:9MF802 0.0 84.8 1.0
C22 B:9MF802 1.4 73.3 1.0
C23 B:9MF802 2.4 70.5 1.0
C21 B:9MF802 2.4 70.5 1.0
HE1 D:PHE104 2.5 89.3 1.0
H231 B:9MF802 2.5 66.1 1.0
H211 B:9MF802 2.6 66.2 1.0
CE1 D:PHE104 2.9 89.3 1.0
HE1 B:PHE240 3.4 65.8 1.0
HD1 D:PHE104 3.4 89.3 1.0
HZ D:PHE100 3.4 99.4 1.0
CD1 D:PHE104 3.4 90.2 1.0
C24 B:9MF802 3.6 67.8 1.0
C20 B:9MF802 3.6 59.8 1.0
HD1 B:PHE240 3.7 66.2 1.0
CZ D:PHE104 3.7 88.8 1.0
CE1 B:PHE240 3.7 64.6 1.0
CD1 B:PHE240 3.9 68.6 1.0
HZ D:PHE104 3.9 89.2 1.0
H231 D:9MF801 4.1 94.1 1.0
C19 B:9MF802 4.1 52.3 1.0
H241 D:9MF801 4.2 95.7 1.0
CZ D:PHE100 4.3 99.6 1.0
H241 B:9MF802 4.4 65.5 1.0
H201 B:9MF802 4.4 65.6 1.0
CG D:PHE104 4.5 89.5 1.0
CZ B:PHE240 4.6 66.5 1.0
C23 D:9MF801 4.7 92.0 1.0
CE2 D:PHE104 4.7 90.2 1.0
C24 D:9MF801 4.7 99.5 1.0
HE2 D:PHE100 4.9 99.0 1.0
HZ B:PHE240 4.9 66.0 1.0
CG B:PHE240 4.9 64.1 1.0

Fluorine binding site 5 out of 8 in 8j04

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Fluorine binding site 5 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F801

b:102.0
occ:1.00
F25 D:9MF801 0.0 102.0 1.0
C22 D:9MF801 1.4 96.2 1.0
C23 D:9MF801 2.4 92.0 1.0
C21 D:9MF801 2.4 94.3 1.0
H132 B:9MF802 2.4 65.1 1.0
H231 D:9MF801 2.5 94.1 1.0
H211 D:9MF801 2.6 94.4 1.0
H051 B:9MF802 3.0 64.7 1.0
C13 B:9MF802 3.4 62.8 1.0
C24 D:9MF801 3.6 99.5 1.0
C20 D:9MF801 3.6 93.3 1.0
H131 B:9MF802 3.7 63.9 1.0
C05 B:9MF802 3.8 56.4 1.0
H133 B:9MF802 3.9 64.6 1.0
H181 B:9MF802 4.0 65.9 1.0
C06 B:9MF802 4.1 55.8 1.0
C19 D:9MF801 4.1 102.8 1.0
H241 D:9MF801 4.4 95.7 1.0
H201 D:9MF801 4.4 94.8 1.0
C19 B:9MF802 4.5 52.3 1.0
C20 B:9MF802 4.5 59.8 1.0
H201 B:9MF802 4.6 65.6 1.0
CD2 B:TRP236 4.6 54.1 1.0
C18 B:9MF802 4.7 69.5 1.0
CE2 B:TRP236 4.8 53.5 1.0
CE3 B:TRP236 4.8 67.3 1.0
C04 B:9MF802 5.0 55.1 1.0
CZ3 B:TRP236 5.0 65.8 1.0
C24 B:9MF802 5.0 67.8 1.0
C21 B:9MF802 5.0 70.5 1.0
CZ2 B:TRP236 5.0 62.1 1.0

Fluorine binding site 6 out of 8 in 8j04

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Fluorine binding site 6 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F802

b:85.0
occ:1.00
F25 D:9MF802 0.0 85.0 1.0
C22 D:9MF802 1.4 74.2 1.0
C23 D:9MF802 2.4 71.8 1.0
C21 D:9MF802 2.4 71.2 1.0
HE1 G:PHE104 2.5 89.4 1.0
H231 D:9MF802 2.5 67.5 1.0
H211 D:9MF802 2.6 67.5 1.0
CE1 G:PHE104 2.9 89.1 1.0
HD1 G:PHE104 3.4 89.4 1.0
HE1 D:PHE240 3.4 65.6 1.0
HZ G:PHE100 3.4 99.2 1.0
CD1 G:PHE104 3.4 90.2 1.0
C24 D:9MF802 3.6 69.0 1.0
C20 D:9MF802 3.6 61.3 1.0
HD1 D:PHE240 3.7 65.8 1.0
CZ G:PHE104 3.7 89.0 1.0
CE1 D:PHE240 3.7 63.7 1.0
HZ G:PHE104 3.9 89.3 1.0
CD1 D:PHE240 3.9 67.6 1.0
H231 G:9MF801 4.1 94.1 1.0
C19 D:9MF802 4.1 54.2 1.0
H241 G:9MF801 4.2 95.6 1.0
CZ G:PHE100 4.3 99.3 1.0
H241 D:9MF802 4.4 66.7 1.0
H201 D:9MF802 4.4 67.0 1.0
CG G:PHE104 4.5 89.4 1.0
CZ D:PHE240 4.6 66.4 1.0
C23 G:9MF801 4.7 92.9 1.0
CE2 G:PHE104 4.7 90.8 1.0
C24 G:9MF801 4.7 99.8 1.0
HE2 G:PHE100 4.9 98.8 1.0
HZ D:PHE240 4.9 65.8 1.0
CG D:PHE240 4.9 63.6 1.0

Fluorine binding site 7 out of 8 in 8j04

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Fluorine binding site 7 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F801

b:102.4
occ:1.00
F25 G:9MF801 0.0 102.4 1.0
C22 G:9MF801 1.4 96.3 1.0
C23 G:9MF801 2.4 92.9 1.0
C21 G:9MF801 2.4 93.9 1.0
H132 D:9MF802 2.4 66.3 1.0
H231 G:9MF801 2.5 94.1 1.0
H211 G:9MF801 2.6 94.3 1.0
H051 D:9MF802 3.0 66.0 1.0
C13 D:9MF802 3.4 64.1 1.0
C24 G:9MF801 3.6 99.8 1.0
C20 G:9MF801 3.6 92.9 1.0
H131 D:9MF802 3.8 65.3 1.0
C05 D:9MF802 3.8 57.5 1.0
H133 D:9MF802 3.9 65.9 1.0
H181 D:9MF802 4.0 67.0 1.0
C06 D:9MF802 4.1 57.7 1.0
C19 G:9MF801 4.1 102.5 1.0
H241 G:9MF801 4.4 95.6 1.0
H201 G:9MF801 4.4 94.6 1.0
C20 D:9MF802 4.5 61.3 1.0
C19 D:9MF802 4.5 54.2 1.0
H201 D:9MF802 4.6 67.0 1.0
CD2 D:TRP236 4.6 52.2 1.0
C18 D:9MF802 4.7 69.9 1.0
CE2 D:TRP236 4.8 52.4 1.0
CE3 D:TRP236 4.8 66.2 1.0
C04 D:9MF802 5.0 56.3 1.0
CZ3 D:TRP236 5.0 64.8 1.0
C24 D:9MF802 5.0 69.0 1.0
C21 D:9MF802 5.0 71.2 1.0
CZ2 D:TRP236 5.0 61.4 1.0

Fluorine binding site 8 out of 8 in 8j04

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Fluorine binding site 8 out of 8 in the Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Human KCNQ2-Cam-HN37 Complex in the Presence of PIP2 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F802

b:85.2
occ:1.00
F25 G:9MF802 0.0 85.2 1.0
C22 G:9MF802 1.4 73.9 1.0
C23 G:9MF802 2.4 71.3 1.0
C21 G:9MF802 2.4 70.8 1.0
HE1 A:PHE104 2.5 90.0 1.0
H231 G:9MF802 2.5 67.0 1.0
H211 G:9MF802 2.6 67.0 1.0
CE1 A:PHE104 2.9 89.7 1.0
HD1 A:PHE104 3.4 90.0 1.0
HE1 G:PHE240 3.4 65.7 1.0
HZ A:PHE100 3.4 99.7 1.0
CD1 A:PHE104 3.4 90.6 1.0
C24 G:9MF802 3.6 68.1 1.0
C20 G:9MF802 3.6 60.0 1.0
HD1 G:PHE240 3.7 65.7 1.0
CZ A:PHE104 3.7 89.6 1.0
CE1 G:PHE240 3.8 62.8 1.0
CD1 G:PHE240 3.9 67.6 1.0
HZ A:PHE104 3.9 89.8 1.0
H231 A:9MF802 4.1 94.3 1.0
C19 G:9MF802 4.1 52.7 1.0
H241 A:9MF802 4.2 95.8 1.0
CZ A:PHE100 4.3 99.2 1.0
H241 G:9MF802 4.4 66.1 1.0
H201 G:9MF802 4.4 66.2 1.0
CG A:PHE104 4.5 90.0 1.0
CZ G:PHE240 4.7 64.5 1.0
C23 A:9MF802 4.7 92.8 1.0
CE2 A:PHE104 4.7 91.2 1.0
C24 A:9MF802 4.7 99.9 1.0
HE2 A:PHE100 4.9 99.3 1.0
HZ G:PHE240 4.9 66.4 1.0
CG G:PHE240 4.9 62.8 1.0

Reference:

D.Ma, Y.Zheng, X.Li, X.Zhou, Z.Yang, Y.Zhang, L.Wang, W.Zhang, J.Fang, G.Zhao, P.Hou, F.Nan, W.Yang, N.Su, Z.Gao, J.Guo. Ligand Activation Mechanisms of Human KCNQ2 Channel. Nat Commun V. 14 6632 2023.
ISSN: ESSN 2041-1723
PubMed: 37857637
DOI: 10.1038/S41467-023-42416-X
Page generated: Fri Aug 2 20:53:06 2024

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