Fluorine in PDB 8op6: Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound)

Other elements in 8op6:

The structure of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound) (pdb code 8op6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound), PDB code: 8op6:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8op6

Go back to Fluorine Binding Sites List in 8op6
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1401

b:66.4
occ:1.00
 F1 A:ALF1401 0.0 66.4 1.0
AL A:ALF1401 1.8 66.4 1.0
MG A:MG1402 2.1 65.4 1.0
OD2 A:ASP499 2.3 59.6 1.0
F3 A:ALF1401 2.5 66.4 1.0
F4 A:ALF1401 2.5 66.4 1.0
OD2 A:ASP863 2.9 68.2 1.0
CG A:ASP499 3.1 59.6 1.0
OD1 A:ASP863 3.3 68.2 1.0
CG A:ASP863 3.4 68.2 1.0
OD1 A:ASP499 3.4 59.6 1.0
F2 A:ALF1401 3.6 66.4 1.0
NZ A:LYS840 3.8 64.4 1.0
CB A:ASN862 4.1 75.7 1.0
O A:THR501 4.2 65.2 1.0
CB A:ASP499 4.3 59.6 1.0
OG1 A:THR501 4.5 65.2 1.0
OD1 A:ASP859 4.5 65.4 1.0
ND2 A:ASN862 4.6 75.7 1.0
N A:GLY860 4.7 68.6 1.0
CB A:ASP863 4.7 68.2 1.0
CG A:ASN862 4.7 75.7 1.0
N A:ASP863 4.8 68.2 1.0
CA A:GLY860 4.8 68.6 1.0
CA A:ASN862 4.9 75.7 1.0
C A:ASN862 4.9 75.7 1.0

Fluorine binding site 2 out of 4 in 8op6

Go back to Fluorine Binding Sites List in 8op6
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1401

b:66.4
occ:1.00
 F2 A:ALF1401 0.0 66.4 1.0
AL A:ALF1401 1.8 66.4 1.0
OG1 A:THR501 2.3 65.2 1.0
F4 A:ALF1401 2.5 66.4 1.0
F3 A:ALF1401 2.5 66.4 1.0
OD1 A:ASP499 3.4 59.6 1.0
F1 A:ALF1401 3.6 66.4 1.0
OG1 A:THR740 3.6 61.5 1.0
CB A:THR501 3.6 65.2 1.0
N A:GLY741 3.8 67.5 1.0
OD2 A:ASP499 4.0 59.6 1.0
N A:THR501 4.0 65.2 1.0
MG A:MG1402 4.1 65.4 1.0
CG A:ASP499 4.1 59.6 1.0
CG2 A:THR501 4.1 65.2 1.0
CA A:THR501 4.4 65.2 1.0
O A:THR501 4.4 65.2 1.0
CA A:GLY741 4.5 67.5 1.0
CA A:THR740 4.6 61.5 1.0
CB A:THR740 4.6 61.5 1.0
C A:THR740 4.7 61.5 1.0
NZ A:LYS840 4.9 64.4 1.0
C A:THR501 4.9 65.2 1.0
ND2 A:ASN862 4.9 75.7 1.0
C A:GLY741 4.9 67.5 1.0

Fluorine binding site 3 out of 4 in 8op6

Go back to Fluorine Binding Sites List in 8op6
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1401

b:66.4
occ:1.00
 F3 A:ALF1401 0.0 66.4 1.0
AL A:ALF1401 1.8 66.4 1.0
MG A:MG1402 2.0 65.4 1.0
OG1 A:THR501 2.3 65.2 1.0
F1 A:ALF1401 2.5 66.4 1.0
F2 A:ALF1401 2.5 66.4 1.0
O A:THR501 2.7 65.2 1.0
OD2 A:ASP499 3.2 59.6 1.0
CB A:THR501 3.4 65.2 1.0
F4 A:ALF1401 3.6 66.4 1.0
C A:THR501 3.7 65.2 1.0
CA A:THR501 3.9 65.2 1.0
CG A:ASP499 4.0 59.6 1.0
OD1 A:ASP499 4.1 59.6 1.0
N A:THR501 4.2 65.2 1.0
CG2 A:THR501 4.6 65.2 1.0
ND2 A:ASN862 4.7 75.7 1.0
OD1 A:ASP859 4.7 65.4 1.0
N A:GLY502 4.8 69.8 1.0

Fluorine binding site 4 out of 4 in 8op6

Go back to Fluorine Binding Sites List in 8op6
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of P5A-Atpase CTSPF1 (E1P State with Cytosolic- Feature Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1401

b:66.4
occ:1.00
 F4 A:ALF1401 0.0 66.4 1.0
AL A:ALF1401 1.8 66.4 1.0
NZ A:LYS840 2.4 64.4 1.0
F2 A:ALF1401 2.5 66.4 1.0
F1 A:ALF1401 2.5 66.4 1.0
OD1 A:ASP499 2.6 59.6 1.0
CG A:ASP499 3.2 59.6 1.0
OD2 A:ASP499 3.3 59.6 1.0
F3 A:ALF1401 3.6 66.4 1.0
CE A:LYS840 3.6 64.4 1.0
OD1 A:ASP863 3.7 68.2 1.0
N A:GLY741 3.9 67.5 1.0
CA A:THR740 4.0 61.5 1.0
MG A:MG1402 4.1 65.4 1.0
OD2 A:ASP863 4.2 68.2 1.0
C A:THR740 4.3 61.5 1.0
CG A:ASP863 4.4 68.2 1.0
OG1 A:THR740 4.4 61.5 1.0
O A:ILE739 4.4 54.1 1.0
OG1 A:THR501 4.5 65.2 1.0
CB A:ASP499 4.5 59.6 1.0
CB A:ASN862 4.6 75.7 1.0
CB A:THR740 4.7 61.5 1.0
CA A:GLY741 4.8 67.5 1.0
CD A:LYS840 4.8 64.4 1.0
ND2 A:ASN862 4.9 75.7 1.0
N A:THR740 4.9 61.5 1.0

Reference:

P.Li, P.Gourdon. Cryo-Em Structures Insights Into P5A-Atpase CTSPF1 To Be Published.
Page generated: Thu Oct 31 19:53:31 2024

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