Fluorine in PDB 8q75: Copper-Transporting Atpase HMA4 in E2P State with Alf

The structure of Copper-Transporting Atpase HMA4 in E2P State with Alf also contains other interesting chemical elements:

Aluminium	(Al)	1 atom
Magnesium	(Mg)	1 atom

The binding sites of Fluorine atom in the Copper-Transporting Atpase HMA4 in E2P State with Alf (pdb code 8q75). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Copper-Transporting Atpase HMA4 in E2P State with Alf, PDB code: 8q75:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Copper-Transporting Atpase HMA4 in E2P State with Alf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Copper-Transporting Atpase HMA4 in E2P State with Alf within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:162.2 occ:1.00 F1 A:ALF1001 0.0 162.2 1.0 AL A:ALF1001 1.8 165.0 1.0 F3 A:ALF1001 2.5 160.9 1.0 F4 A:ALF1001 2.5 165.9 1.0 OD1 A:ASP641 2.6 148.5 1.0 N A:GLY802 2.8 164.3 1.0 OG1 A:THR801 3.0 162.5 1.0 CA A:THR801 3.2 159.1 1.0 C A:THR801 3.3 160.1 1.0 CG A:ASP641 3.4 145.6 1.0 F2 A:ALF1001 3.6 165.2 1.0 CB A:THR801 3.6 160.7 1.0 OD2 A:ASP641 3.8 150.2 1.0 CA A:GLY802 3.8 164.9 1.0 O A:THR480 4.3 168.0 1.0 NZ A:LYS829 4.3 148.5 1.0 O A:THR801 4.3 161.2 1.0 O A:VAL800 4.3 154.4 1.0 N A:LYS642 4.4 148.1 1.0 N A:THR801 4.5 159.0 1.0 N A:ASP803 4.6 168.1 1.0 C A:GLY802 4.7 162.7 1.0 CB A:ASP641 4.7 138.9 1.0 CA A:ASP641 4.8 136.3 1.0 N A:THR643 4.9 159.7 1.0 C A:VAL800 4.9 149.1 1.0 CG2 A:THR801 5.0 160.3 1.0

Fluorine binding site 2 out of 4 in the Copper-Transporting Atpase HMA4 in E2P State with Alf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Copper-Transporting Atpase HMA4 in E2P State with Alf within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:165.2 occ:1.00 F2 A:ALF1001 0.0 165.2 1.0 AL A:ALF1001 1.8 165.0 1.0 OD2 A:ASP641 1.8 150.2 1.0 MG A:MG1002 1.9 181.8 1.0 O A:THR643 2.2 164.8 1.0 F4 A:ALF1001 2.5 165.9 1.0 F3 A:ALF1001 2.5 160.9 1.0 CG A:ASP641 2.8 145.6 1.0 C A:THR643 3.1 159.8 1.0 CB A:THR643 3.2 159.9 1.0 N A:THR643 3.3 159.7 1.0 OD1 A:ASP641 3.3 148.5 1.0 CA A:THR643 3.3 159.4 1.0 F1 A:ALF1001 3.6 162.2 1.0 OD1 A:ASP848 3.7 157.6 1.0 OD2 A:ASP848 3.8 154.4 1.0 CB A:ASP641 3.9 138.9 1.0 OG1 A:THR643 4.1 161.2 1.0 CG A:ASP848 4.1 153.9 1.0 C A:LYS642 4.2 149.9 1.0 N A:LYS642 4.2 148.1 1.0 CG2 A:THR643 4.3 161.4 1.0 N A:GLY644 4.3 151.1 1.0 O A:GLY481 4.5 166.3 1.0 C A:ASP641 4.6 140.0 1.0 CA A:ASP641 4.8 136.3 1.0 CA A:LYS642 4.8 146.2 1.0 O A:LYS642 4.9 152.1 1.0 CA A:GLY644 4.9 154.6 1.0

Fluorine binding site 3 out of 4 in the Copper-Transporting Atpase HMA4 in E2P State with Alf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Copper-Transporting Atpase HMA4 in E2P State with Alf within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:160.9 occ:1.00 F3 A:ALF1001 0.0 160.9 1.0 AL A:ALF1001 1.8 165.0 1.0 F1 A:ALF1001 2.5 162.2 1.0 F2 A:ALF1001 2.5 165.2 1.0 OD2 A:ASP641 2.6 150.2 1.0 OD1 A:ASP641 2.7 148.5 1.0 CG A:ASP641 3.0 145.6 1.0 MG A:MG1002 3.4 181.8 1.0 F4 A:ALF1001 3.6 165.9 1.0 OD1 A:ASP852 3.8 161.4 1.0 ND2 A:ASN851 3.9 154.4 1.0 CB A:ASN851 4.0 150.5 1.0 O A:THR480 4.1 168.0 1.0 CA A:GLY481 4.3 163.8 1.0 CB A:ASP641 4.5 138.9 1.0 CG A:ASN851 4.5 155.2 1.0 O A:GLY481 4.6 166.3 1.0 OD2 A:ASP852 4.6 165.7 1.0 CG A:ASP852 4.6 162.9 1.0 O A:THR643 4.6 164.8 1.0 C A:GLY481 4.7 164.9 1.0 NZ A:LYS829 4.8 148.5 1.0 CE A:LYS829 5.0 148.1 1.0 C A:THR480 5.0 166.1 1.0

Fluorine binding site 4 out of 4 in the Copper-Transporting Atpase HMA4 in E2P State with Alf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Copper-Transporting Atpase HMA4 in E2P State with Alf within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:165.9 occ:1.00 F4 A:ALF1001 0.0 165.9 1.0 AL A:ALF1001 1.8 165.0 1.0 N A:THR643 2.3 159.7 1.0 F2 A:ALF1001 2.5 165.2 1.0 F1 A:ALF1001 2.5 162.2 1.0 N A:LYS642 2.7 148.1 1.0 OG1 A:THR801 3.1 162.5 1.0 C A:LYS642 3.2 149.9 1.0 OD1 A:ASP641 3.2 148.5 1.0 CB A:LYS642 3.2 143.4 1.0 CA A:LYS642 3.2 146.2 1.0 CG A:ASP641 3.2 145.6 1.0 OD2 A:ASP641 3.3 150.2 1.0 CA A:THR643 3.3 159.4 1.0 OG1 A:THR643 3.3 161.2 1.0 CB A:THR643 3.4 159.9 1.0 F3 A:ALF1001 3.6 160.9 1.0 C A:ASP641 3.7 140.0 1.0 O A:THR643 3.8 164.8 1.0 CB A:THR801 3.8 160.7 1.0 C A:THR643 4.0 159.8 1.0 CB A:ASP641 4.1 138.9 1.0 CA A:ASP641 4.2 136.3 1.0 OD2 A:ASP803 4.2 174.4 1.0 CE A:LYS642 4.2 151.5 1.0 MG A:MG1002 4.3 181.8 1.0 CA A:THR801 4.3 159.1 1.0 O A:LYS642 4.3 152.1 1.0 NZ A:LYS642 4.5 154.7 1.0 N A:GLY802 4.6 164.3 1.0 O A:ASP641 4.6 142.8 1.0 CG A:LYS642 4.6 146.8 1.0 CG2 A:THR643 4.9 161.4 1.0 CG A:ASP803 4.9 173.3 1.0 C A:THR801 5.0 160.1 1.0

Z.Guo, F.Oradd, V.Bagenholm, C.Gronberg, J.F.Ma, P.Ott, Y.Wang, M.Andersson, P.A.Pedersen, K.Wang, P.Gourdon. Diverse Roles of the Metal Binding Domains and Transport Mechanism of Copper Transporting P-Type Atpases. Nat Commun V. 15 2690 2024.
ISSN: ESSN 2041-1723
PubMed: 38538615
DOI: 10.1038/S41467-024-47001-4