Fluorine in PDB 8rao: Structure of SEN1-Adp.BEF3-Rna Complex
Other elements in 8rao:
The structure of Structure of SEN1-Adp.BEF3-Rna Complex also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of SEN1-Adp.BEF3-Rna Complex
(pdb code 8rao). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Structure of SEN1-Adp.BEF3-Rna Complex, PDB code: 8rao:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 8rao
Go back to
Fluorine Binding Sites List in 8rao
Fluorine binding site 1 out
of 3 in the Structure of SEN1-Adp.BEF3-Rna Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of SEN1-Adp.BEF3-Rna Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:F3003
b:267.4
occ:1.00
|
F1
|
O:BEF3003
|
0.0
|
267.4
|
1.0
|
BE
|
O:BEF3003
|
1.5
|
267.4
|
1.0
|
OE2
|
O:GLU1591
|
2.2
|
249.6
|
1.0
|
F3
|
O:BEF3003
|
2.5
|
267.4
|
1.0
|
F2
|
O:BEF3003
|
2.6
|
267.4
|
1.0
|
O3B
|
O:ADP3001
|
3.1
|
252.7
|
1.0
|
O1B
|
O:ADP3001
|
3.1
|
252.7
|
1.0
|
PB
|
O:ADP3001
|
3.2
|
252.7
|
1.0
|
O2B
|
O:ADP3001
|
3.3
|
252.7
|
1.0
|
CD
|
O:GLU1591
|
3.3
|
249.6
|
1.0
|
NZ
|
O:LYS1363
|
3.3
|
245.8
|
1.0
|
CD
|
O:LYS1363
|
3.4
|
245.8
|
1.0
|
CA
|
O:GLY1785
|
3.4
|
279.9
|
1.0
|
CE
|
O:LYS1363
|
3.6
|
245.8
|
1.0
|
NE2
|
O:GLN1619
|
3.8
|
265.6
|
1.0
|
OE1
|
O:GLU1591
|
3.9
|
249.6
|
1.0
|
N
|
O:GLY1785
|
3.9
|
279.9
|
1.0
|
MG
|
O:MG3002
|
4.0
|
258.6
|
1.0
|
NH2
|
O:ARG1820
|
4.4
|
280.1
|
1.0
|
CG
|
O:LYS1363
|
4.4
|
245.8
|
1.0
|
CG
|
O:GLU1591
|
4.5
|
249.6
|
1.0
|
NH1
|
O:ARG1820
|
4.5
|
280.1
|
1.0
|
C
|
O:GLY1785
|
4.5
|
279.9
|
1.0
|
O
|
O:GLY1785
|
4.7
|
279.9
|
1.0
|
O3A
|
O:ADP3001
|
4.8
|
252.7
|
1.0
|
NH1
|
O:ARG1656
|
4.9
|
260.4
|
1.0
|
CZ
|
O:ARG1820
|
4.9
|
280.1
|
1.0
|
CG
|
O:GLN1784
|
4.9
|
272.6
|
1.0
|
C
|
O:GLN1784
|
4.9
|
272.6
|
1.0
|
CD
|
O:GLN1619
|
5.0
|
265.6
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 8rao
Go back to
Fluorine Binding Sites List in 8rao
Fluorine binding site 2 out
of 3 in the Structure of SEN1-Adp.BEF3-Rna Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of SEN1-Adp.BEF3-Rna Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:F3003
b:267.4
occ:1.00
|
F2
|
O:BEF3003
|
0.0
|
267.4
|
1.0
|
BE
|
O:BEF3003
|
1.6
|
267.4
|
1.0
|
F3
|
O:BEF3003
|
2.5
|
267.4
|
1.0
|
F1
|
O:BEF3003
|
2.6
|
267.4
|
1.0
|
NZ
|
O:LYS1363
|
2.9
|
245.8
|
1.0
|
NE2
|
O:GLN1619
|
3.1
|
265.6
|
1.0
|
CD
|
O:LYS1363
|
3.1
|
245.8
|
1.0
|
O3B
|
O:ADP3001
|
3.2
|
252.7
|
1.0
|
CA
|
O:PRO1359
|
3.2
|
257.4
|
1.0
|
CG
|
O:PRO1359
|
3.4
|
257.4
|
1.0
|
N
|
O:PRO1359
|
3.4
|
257.4
|
1.0
|
CB
|
O:PRO1359
|
3.5
|
257.4
|
1.0
|
CE
|
O:LYS1363
|
3.6
|
245.8
|
1.0
|
CD
|
O:PRO1359
|
3.7
|
257.4
|
1.0
|
CD
|
O:GLN1619
|
3.8
|
265.6
|
1.0
|
C
|
O:PRO1358
|
3.9
|
237.6
|
1.0
|
OE2
|
O:GLU1591
|
3.9
|
249.6
|
1.0
|
O
|
O:GLY1357
|
4.0
|
233.0
|
1.0
|
CG
|
O:GLN1619
|
4.2
|
265.6
|
1.0
|
O
|
O:PRO1358
|
4.2
|
237.6
|
1.0
|
PB
|
O:ADP3001
|
4.3
|
252.7
|
1.0
|
CG
|
O:LYS1363
|
4.5
|
245.8
|
1.0
|
OE1
|
O:GLU1591
|
4.6
|
249.6
|
1.0
|
C
|
O:PRO1359
|
4.6
|
257.4
|
1.0
|
NH2
|
O:ARG1820
|
4.6
|
280.1
|
1.0
|
CB
|
O:ASP1616
|
4.6
|
246.2
|
1.0
|
OE1
|
O:GLN1619
|
4.7
|
265.6
|
1.0
|
CD
|
O:GLU1591
|
4.7
|
249.6
|
1.0
|
O1B
|
O:ADP3001
|
4.7
|
252.7
|
1.0
|
CA
|
O:PRO1358
|
4.7
|
237.6
|
1.0
|
O2B
|
O:ADP3001
|
4.7
|
252.7
|
1.0
|
NH1
|
O:ARG1656
|
4.8
|
260.4
|
1.0
|
N
|
O:GLY1360
|
4.9
|
252.7
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 8rao
Go back to
Fluorine Binding Sites List in 8rao
Fluorine binding site 3 out
of 3 in the Structure of SEN1-Adp.BEF3-Rna Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of SEN1-Adp.BEF3-Rna Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:F3003
b:267.4
occ:1.00
|
F3
|
O:BEF3003
|
0.0
|
267.4
|
1.0
|
BE
|
O:BEF3003
|
1.5
|
267.4
|
1.0
|
NH2
|
O:ARG1820
|
2.3
|
280.1
|
1.0
|
NE2
|
O:GLN1619
|
2.3
|
265.6
|
1.0
|
F2
|
O:BEF3003
|
2.5
|
267.4
|
1.0
|
F1
|
O:BEF3003
|
2.5
|
267.4
|
1.0
|
CZ
|
O:ARG1820
|
3.2
|
280.1
|
1.0
|
CB
|
O:PRO1359
|
3.3
|
257.4
|
1.0
|
CG
|
O:PRO1359
|
3.3
|
257.4
|
1.0
|
NH1
|
O:ARG1820
|
3.5
|
280.1
|
1.0
|
O3B
|
O:ADP3001
|
3.6
|
252.7
|
1.0
|
CD
|
O:GLN1619
|
3.6
|
265.6
|
1.0
|
O1B
|
O:ADP3001
|
3.7
|
252.7
|
1.0
|
NH1
|
O:ARG1656
|
3.9
|
260.4
|
1.0
|
CA
|
O:PRO1359
|
3.9
|
257.4
|
1.0
|
N
|
O:GLY1785
|
4.1
|
279.9
|
1.0
|
PB
|
O:ADP3001
|
4.2
|
252.7
|
1.0
|
OE1
|
O:GLN1619
|
4.2
|
265.6
|
1.0
|
OG1
|
O:THR1819
|
4.3
|
269.9
|
1.0
|
NE
|
O:ARG1820
|
4.3
|
280.1
|
1.0
|
CA
|
O:GLY1785
|
4.3
|
279.9
|
1.0
|
OE2
|
O:GLU1591
|
4.4
|
249.6
|
1.0
|
CD
|
O:PRO1359
|
4.5
|
257.4
|
1.0
|
CG
|
O:GLN1619
|
4.6
|
265.6
|
1.0
|
N
|
O:PRO1359
|
4.6
|
257.4
|
1.0
|
NZ
|
O:LYS1363
|
4.9
|
245.8
|
1.0
|
CG
|
O:GLN1784
|
4.9
|
272.6
|
1.0
|
CB
|
O:THR1819
|
4.9
|
269.9
|
1.0
|
O
|
O:THR1819
|
5.0
|
269.9
|
1.0
|
|
Reference:
S.Rengachari,
T.Hainthaler,
C.Oberthuer,
M.Lidschreiber,
P.Cramer.
Mechanism of Polyadenylation-Independent Rna Polymerase II Termination. Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
PubMed: 39424994
DOI: 10.1038/S41594-024-01409-0
Page generated: Wed Nov 13 08:16:46 2024
|