Fluorine in PDB 8rao: Structure of SEN1-Adp.BEF3-Rna Complex

Other elements in 8rao:

The structure of Structure of SEN1-Adp.BEF3-Rna Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of SEN1-Adp.BEF3-Rna Complex (pdb code 8rao). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of SEN1-Adp.BEF3-Rna Complex, PDB code: 8rao:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8rao

Go back to Fluorine Binding Sites List in 8rao
Fluorine binding site 1 out of 3 in the Structure of SEN1-Adp.BEF3-Rna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of SEN1-Adp.BEF3-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
O:F3003

b:267.4
occ:1.00
 F1 O:BEF3003 0.0 267.4 1.0
BE O:BEF3003 1.5 267.4 1.0
OE2 O:GLU1591 2.2 249.6 1.0
F3 O:BEF3003 2.5 267.4 1.0
F2 O:BEF3003 2.6 267.4 1.0
O3B O:ADP3001 3.1 252.7 1.0
O1B O:ADP3001 3.1 252.7 1.0
PB O:ADP3001 3.2 252.7 1.0
O2B O:ADP3001 3.3 252.7 1.0
CD O:GLU1591 3.3 249.6 1.0
NZ O:LYS1363 3.3 245.8 1.0
CD O:LYS1363 3.4 245.8 1.0
CA O:GLY1785 3.4 279.9 1.0
CE O:LYS1363 3.6 245.8 1.0
NE2 O:GLN1619 3.8 265.6 1.0
OE1 O:GLU1591 3.9 249.6 1.0
N O:GLY1785 3.9 279.9 1.0
MG O:MG3002 4.0 258.6 1.0
NH2 O:ARG1820 4.4 280.1 1.0
CG O:LYS1363 4.4 245.8 1.0
CG O:GLU1591 4.5 249.6 1.0
NH1 O:ARG1820 4.5 280.1 1.0
C O:GLY1785 4.5 279.9 1.0
O O:GLY1785 4.7 279.9 1.0
O3A O:ADP3001 4.8 252.7 1.0
NH1 O:ARG1656 4.9 260.4 1.0
CZ O:ARG1820 4.9 280.1 1.0
CG O:GLN1784 4.9 272.6 1.0
C O:GLN1784 4.9 272.6 1.0
CD O:GLN1619 5.0 265.6 1.0

Fluorine binding site 2 out of 3 in 8rao

Go back to Fluorine Binding Sites List in 8rao
Fluorine binding site 2 out of 3 in the Structure of SEN1-Adp.BEF3-Rna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of SEN1-Adp.BEF3-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
O:F3003

b:267.4
occ:1.00
 F2 O:BEF3003 0.0 267.4 1.0
BE O:BEF3003 1.6 267.4 1.0
F3 O:BEF3003 2.5 267.4 1.0
F1 O:BEF3003 2.6 267.4 1.0
NZ O:LYS1363 2.9 245.8 1.0
NE2 O:GLN1619 3.1 265.6 1.0
CD O:LYS1363 3.1 245.8 1.0
O3B O:ADP3001 3.2 252.7 1.0
CA O:PRO1359 3.2 257.4 1.0
CG O:PRO1359 3.4 257.4 1.0
N O:PRO1359 3.4 257.4 1.0
CB O:PRO1359 3.5 257.4 1.0
CE O:LYS1363 3.6 245.8 1.0
CD O:PRO1359 3.7 257.4 1.0
CD O:GLN1619 3.8 265.6 1.0
C O:PRO1358 3.9 237.6 1.0
OE2 O:GLU1591 3.9 249.6 1.0
O O:GLY1357 4.0 233.0 1.0
CG O:GLN1619 4.2 265.6 1.0
O O:PRO1358 4.2 237.6 1.0
PB O:ADP3001 4.3 252.7 1.0
CG O:LYS1363 4.5 245.8 1.0
OE1 O:GLU1591 4.6 249.6 1.0
C O:PRO1359 4.6 257.4 1.0
NH2 O:ARG1820 4.6 280.1 1.0
CB O:ASP1616 4.6 246.2 1.0
OE1 O:GLN1619 4.7 265.6 1.0
CD O:GLU1591 4.7 249.6 1.0
O1B O:ADP3001 4.7 252.7 1.0
CA O:PRO1358 4.7 237.6 1.0
O2B O:ADP3001 4.7 252.7 1.0
NH1 O:ARG1656 4.8 260.4 1.0
N O:GLY1360 4.9 252.7 1.0

Fluorine binding site 3 out of 3 in 8rao

Go back to Fluorine Binding Sites List in 8rao
Fluorine binding site 3 out of 3 in the Structure of SEN1-Adp.BEF3-Rna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of SEN1-Adp.BEF3-Rna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
O:F3003

b:267.4
occ:1.00
 F3 O:BEF3003 0.0 267.4 1.0
BE O:BEF3003 1.5 267.4 1.0
NH2 O:ARG1820 2.3 280.1 1.0
NE2 O:GLN1619 2.3 265.6 1.0
F2 O:BEF3003 2.5 267.4 1.0
F1 O:BEF3003 2.5 267.4 1.0
CZ O:ARG1820 3.2 280.1 1.0
CB O:PRO1359 3.3 257.4 1.0
CG O:PRO1359 3.3 257.4 1.0
NH1 O:ARG1820 3.5 280.1 1.0
O3B O:ADP3001 3.6 252.7 1.0
CD O:GLN1619 3.6 265.6 1.0
O1B O:ADP3001 3.7 252.7 1.0
NH1 O:ARG1656 3.9 260.4 1.0
CA O:PRO1359 3.9 257.4 1.0
N O:GLY1785 4.1 279.9 1.0
PB O:ADP3001 4.2 252.7 1.0
OE1 O:GLN1619 4.2 265.6 1.0
OG1 O:THR1819 4.3 269.9 1.0
NE O:ARG1820 4.3 280.1 1.0
CA O:GLY1785 4.3 279.9 1.0
OE2 O:GLU1591 4.4 249.6 1.0
CD O:PRO1359 4.5 257.4 1.0
CG O:GLN1619 4.6 265.6 1.0
N O:PRO1359 4.6 257.4 1.0
NZ O:LYS1363 4.9 245.8 1.0
CG O:GLN1784 4.9 272.6 1.0
CB O:THR1819 4.9 269.9 1.0
O O:THR1819 5.0 269.9 1.0

Reference:

S.Rengachari, T.Hainthaler, C.Oberthuer, M.Lidschreiber, P.Cramer. Mechanism of Polyadenylation-Independent Rna Polymerase II Termination. Nat.Struct.Mol.Biol. 2024.
ISSN: ESSN 1545-9985
PubMed: 39424994
DOI: 10.1038/S41594-024-01409-0
Page generated: Wed Nov 13 08:16:46 2024

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