Fluorine in PDB 8skz: Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome

The binding sites of Fluorine atom in the Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome (pdb code 8skz). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome, PDB code: 8skz:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ A:F902 b:131.8 occ:1.00 F1 A:BEF902 0.0 131.8 1.0 BE A:BEF902 1.5 131.8 1.0 O3B A:ADP901 2.0 145.0 1.0 F3 A:BEF902 2.4 131.8 1.0 F2 A:BEF902 2.4 131.8 1.0 OE2 A:GLU334 3.0 132.8 1.0 O2B A:ADP901 3.1 145.0 1.0 HZ3 A:LYS233 3.1 140.2 1.0 PB A:ADP901 3.1 145.0 1.0 O1B A:ADP901 3.7 145.0 1.0 NZ A:LYS233 4.0 140.2 1.0 HE2 A:LYS233 4.0 140.2 1.0 HA2 A:GLY660 4.0 134.7 1.0 CD A:GLU334 4.1 132.8 1.0 HE3 A:LYS233 4.2 140.2 1.0 HZ1 A:LYS233 4.3 140.2 1.0 CE A:LYS233 4.3 140.2 1.0 OD1 A:ASP333 4.4 126.0 1.0 HH21 A:ARG687 4.5 139.8 1.0 O3A A:ADP901 4.5 145.0 1.0 HZ2 A:LYS233 4.6 140.2 1.0 OE1 A:GLU334 4.6 132.8 1.0 OD2 A:ASP333 4.7 126.0 1.0 H A:GLY660 4.9 134.7 1.0 HH11 A:ARG687 4.9 139.8 1.0 CA A:GLY660 5.0 134.7 1.0 CG A:ASP333 5.0 126.0 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ A:F902 b:131.8 occ:1.00 F2 A:BEF902 0.0 131.8 1.0 BE A:BEF902 1.5 131.8 1.0 O3B A:ADP901 2.1 145.0 1.0 F3 A:BEF902 2.3 131.8 1.0 F1 A:BEF902 2.4 131.8 1.0 PB A:ADP901 3.1 145.0 1.0 HA2 A:GLY660 3.2 134.7 1.0 O2B A:ADP901 3.5 145.0 1.0 O3A A:ADP901 3.6 145.0 1.0 CA A:GLY660 4.1 134.7 1.0 OE2 A:GLU334 4.3 132.8 1.0 O A:GLY660 4.3 134.7 1.0 O1B A:ADP901 4.3 145.0 1.0 HA3 A:GLY660 4.3 134.7 1.0 OD2 A:ASP333 4.4 126.0 1.0 HG1 A:THR234 4.5 138.3 1.0 OG1 A:THR234 4.5 138.3 1.0 HZ3 A:LYS233 4.7 140.2 1.0 C A:GLY660 4.7 134.7 1.0 HG22 A:THR261 4.7 126.4 1.0 HH11 A:ARG687 4.7 139.8 1.0 H A:GLY660 5.0 134.7 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of DDM1-Hells Chimera Bound to the Nucleosome within 5.0Å range: probe atom residue distance (Å) B Occ A:F902 b:131.8 occ:1.00 F3 A:BEF902 0.0 131.8 1.0 BE A:BEF902 1.5 131.8 1.0 F2 A:BEF902 2.3 131.8 1.0 F1 A:BEF902 2.4 131.8 1.0 OD2 A:ASP333 2.5 126.0 1.0 O3B A:ADP901 2.8 145.0 1.0 OD1 A:ASP333 3.1 126.0 1.0 CG A:ASP333 3.1 126.0 1.0 OE2 A:GLU334 3.3 132.8 1.0 HE2 A:LYS233 4.0 140.2 1.0 HG1 A:THR234 4.2 138.3 1.0 PB A:ADP901 4.3 145.0 1.0 HE1 A:TRP265 4.4 126.5 1.0 HZ3 A:LYS233 4.4 140.2 1.0 CD A:GLU334 4.4 132.8 1.0 HZ2 A:TRP265 4.5 126.5 1.0 HD12 A:LEU360 4.6 133.2 1.0 HG2 A:GLU334 4.6 132.8 1.0 H A:GLU334 4.6 132.8 1.0 OG1 A:THR234 4.6 138.3 1.0 HD13 A:LEU360 4.6 133.2 1.0 CB A:ASP333 4.6 126.0 1.0 CE A:LYS233 4.8 140.2 1.0 HE3 A:LYS233 4.8 140.2 1.0 HB2 A:ASP333 4.8 126.0 1.0 O2B A:ADP901 4.9 145.0 1.0 O1B A:ADP901 4.9 145.0 1.0 HA2 A:GLY660 4.9 134.7 1.0 NZ A:LYS233 5.0 140.2 1.0

W.Nartey, G.J.Williams. Cryo-Em Complex of DDM1-Hells Chimera Bound to the Nucleosome To Be Published.