Fluorine in PDB 8ss6: Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Other elements in 8ss6:
The structure of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
(pdb code 8ss6). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State), PDB code: 8ss6:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 1 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1102
b:0.0
occ:1.00
|
FAF
|
A:ZK11102
|
0.0
|
0.0
|
1.0
|
CAZ
|
A:ZK11102
|
1.4
|
0.0
|
1.0
|
FAG
|
A:ZK11102
|
2.2
|
0.0
|
1.0
|
FAH
|
A:ZK11102
|
2.2
|
0.0
|
1.0
|
CAS
|
A:ZK11102
|
2.4
|
0.0
|
1.0
|
OE1
|
A:GLU705
|
2.5
|
60.1
|
1.0
|
CAR
|
A:ZK11102
|
3.1
|
0.0
|
1.0
|
OH
|
A:TYR732
|
3.2
|
41.9
|
1.0
|
NAX
|
A:ZK11102
|
3.2
|
0.0
|
1.0
|
CAM
|
A:ZK11102
|
3.2
|
0.0
|
1.0
|
CAJ
|
A:ZK11102
|
3.4
|
0.0
|
1.0
|
CD
|
A:GLU705
|
3.6
|
60.1
|
1.0
|
CG
|
A:MET708
|
3.6
|
60.0
|
1.0
|
CE
|
A:MET708
|
3.9
|
60.0
|
1.0
|
CAK
|
A:ZK11102
|
3.9
|
0.0
|
1.0
|
OG1
|
A:THR707
|
4.1
|
54.4
|
1.0
|
CAN
|
A:ZK11102
|
4.1
|
0.0
|
1.0
|
OE2
|
A:GLU705
|
4.3
|
60.1
|
1.0
|
CAI
|
A:ZK11102
|
4.3
|
0.0
|
1.0
|
CB
|
A:GLU705
|
4.3
|
60.1
|
1.0
|
SD
|
A:MET708
|
4.3
|
60.0
|
1.0
|
CZ
|
A:TYR732
|
4.4
|
41.9
|
1.0
|
CG
|
A:GLU705
|
4.5
|
60.1
|
1.0
|
CAV
|
A:ZK11102
|
4.6
|
0.0
|
1.0
|
CAL
|
A:ZK11102
|
4.6
|
0.0
|
1.0
|
CB
|
A:MET708
|
4.8
|
60.0
|
1.0
|
OAQ
|
A:ZK11102
|
4.9
|
0.0
|
1.0
|
OE2
|
A:GLU402
|
4.9
|
59.6
|
1.0
|
CE2
|
A:TYR732
|
4.9
|
41.9
|
1.0
|
CAW
|
A:ZK11102
|
5.0
|
0.0
|
1.0
|
N
|
A:MET708
|
5.0
|
60.0
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 2 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1102
b:0.0
occ:1.00
|
FAG
|
A:ZK11102
|
0.0
|
0.0
|
1.0
|
CAZ
|
A:ZK11102
|
1.4
|
0.0
|
1.0
|
FAH
|
A:ZK11102
|
2.2
|
0.0
|
1.0
|
FAF
|
A:ZK11102
|
2.2
|
0.0
|
1.0
|
CAS
|
A:ZK11102
|
2.3
|
0.0
|
1.0
|
CAJ
|
A:ZK11102
|
2.6
|
0.0
|
1.0
|
OH
|
A:TYR732
|
2.8
|
41.9
|
1.0
|
CB
|
A:PRO478
|
3.5
|
43.9
|
1.0
|
CZ
|
A:TYR732
|
3.5
|
41.9
|
1.0
|
CAR
|
A:ZK11102
|
3.7
|
0.0
|
1.0
|
CE2
|
A:TYR732
|
3.7
|
41.9
|
1.0
|
CE2
|
A:TYR405
|
3.7
|
48.5
|
1.0
|
OE1
|
A:GLU705
|
3.8
|
60.1
|
1.0
|
CG
|
A:PRO478
|
3.9
|
43.9
|
1.0
|
CAV
|
A:ZK11102
|
4.0
|
0.0
|
1.0
|
CE
|
A:MET708
|
4.3
|
60.0
|
1.0
|
NAX
|
A:ZK11102
|
4.4
|
0.0
|
1.0
|
CZ
|
A:TYR405
|
4.4
|
48.5
|
1.0
|
CD2
|
A:TYR405
|
4.4
|
48.5
|
1.0
|
OH
|
A:TYR405
|
4.4
|
48.5
|
1.0
|
CG
|
A:GLU402
|
4.5
|
59.6
|
1.0
|
OG1
|
A:THR707
|
4.5
|
54.4
|
1.0
|
OH
|
A:TYR450
|
4.5
|
58.9
|
1.0
|
CE1
|
A:TYR732
|
4.6
|
41.9
|
1.0
|
O
|
A:PRO478
|
4.7
|
43.9
|
1.0
|
NAP
|
A:ZK11102
|
4.7
|
0.0
|
1.0
|
CAI
|
A:ZK11102
|
4.7
|
0.0
|
1.0
|
CA
|
A:PRO478
|
4.8
|
43.9
|
1.0
|
CD2
|
A:TYR732
|
4.9
|
41.9
|
1.0
|
CAW
|
A:ZK11102
|
4.9
|
0.0
|
1.0
|
CD
|
A:GLU705
|
4.9
|
60.1
|
1.0
|
CAM
|
A:ZK11102
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 3 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1102
b:0.0
occ:1.00
|
FAH
|
A:ZK11102
|
0.0
|
0.0
|
1.0
|
CAZ
|
A:ZK11102
|
1.4
|
0.0
|
1.0
|
FAG
|
A:ZK11102
|
2.2
|
0.0
|
1.0
|
FAF
|
A:ZK11102
|
2.2
|
0.0
|
1.0
|
CAS
|
A:ZK11102
|
2.4
|
0.0
|
1.0
|
CAR
|
A:ZK11102
|
3.0
|
0.0
|
1.0
|
NAX
|
A:ZK11102
|
3.0
|
0.0
|
1.0
|
OE2
|
A:GLU402
|
3.1
|
59.6
|
1.0
|
CAN
|
A:ZK11102
|
3.2
|
0.0
|
1.0
|
CD
|
A:GLU402
|
3.2
|
59.6
|
1.0
|
CG
|
A:GLU402
|
3.3
|
59.6
|
1.0
|
CAJ
|
A:ZK11102
|
3.4
|
0.0
|
1.0
|
OH
|
A:TYR450
|
3.6
|
58.9
|
1.0
|
CE
|
A:MET708
|
3.8
|
60.0
|
1.0
|
CAL
|
A:ZK11102
|
3.8
|
0.0
|
1.0
|
CAM
|
A:ZK11102
|
3.9
|
0.0
|
1.0
|
OE1
|
A:GLU402
|
4.0
|
59.6
|
1.0
|
SD
|
A:MET708
|
4.1
|
60.0
|
1.0
|
CG
|
A:MET708
|
4.2
|
60.0
|
1.0
|
CAI
|
A:ZK11102
|
4.3
|
0.0
|
1.0
|
CAK
|
A:ZK11102
|
4.3
|
0.0
|
1.0
|
CZ
|
A:TYR450
|
4.6
|
58.9
|
1.0
|
OE1
|
A:GLU705
|
4.6
|
60.1
|
1.0
|
CB
|
A:GLU402
|
4.6
|
59.6
|
1.0
|
CAV
|
A:ZK11102
|
4.6
|
0.0
|
1.0
|
OAQ
|
A:ZK11102
|
4.6
|
0.0
|
1.0
|
OH
|
A:TYR732
|
4.7
|
41.9
|
1.0
|
CE2
|
A:TYR405
|
4.7
|
48.5
|
1.0
|
CAW
|
A:ZK11102
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 4 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1102
b:32.6
occ:1.00
|
FAF
|
B:ZK11102
|
0.0
|
32.6
|
1.0
|
CAZ
|
B:ZK11102
|
1.4
|
32.6
|
1.0
|
FAG
|
B:ZK11102
|
2.2
|
32.6
|
1.0
|
FAH
|
B:ZK11102
|
2.2
|
32.6
|
1.0
|
CAS
|
B:ZK11102
|
2.4
|
32.6
|
1.0
|
OE1
|
B:GLU705
|
2.7
|
80.1
|
1.0
|
OH
|
B:TYR732
|
3.0
|
73.9
|
1.0
|
CAR
|
B:ZK11102
|
3.1
|
32.6
|
1.0
|
NAX
|
B:ZK11102
|
3.2
|
32.6
|
1.0
|
CAM
|
B:ZK11102
|
3.2
|
32.6
|
1.0
|
CAJ
|
B:ZK11102
|
3.4
|
32.6
|
1.0
|
CG
|
B:MET708
|
3.6
|
84.2
|
1.0
|
CE
|
B:MET708
|
3.7
|
84.2
|
1.0
|
OG1
|
B:THR707
|
3.7
|
79.5
|
1.0
|
CD
|
B:GLU705
|
3.9
|
80.1
|
1.0
|
CAN
|
B:ZK11102
|
4.2
|
32.6
|
1.0
|
SD
|
B:MET708
|
4.2
|
84.2
|
1.0
|
CZ
|
B:TYR732
|
4.3
|
73.9
|
1.0
|
CAI
|
B:ZK11102
|
4.4
|
32.6
|
1.0
|
CAK
|
B:ZK11102
|
4.4
|
32.6
|
1.0
|
CB
|
B:GLU705
|
4.5
|
80.1
|
1.0
|
CAV
|
B:ZK11102
|
4.6
|
32.6
|
1.0
|
OE2
|
B:GLU705
|
4.6
|
80.1
|
1.0
|
CG
|
B:GLU705
|
4.8
|
80.1
|
1.0
|
CE2
|
B:TYR732
|
4.8
|
73.9
|
1.0
|
CB
|
B:MET708
|
4.8
|
84.2
|
1.0
|
N
|
B:MET708
|
4.9
|
84.2
|
1.0
|
CE2
|
B:TYR405
|
5.0
|
86.4
|
1.0
|
CAW
|
B:ZK11102
|
5.0
|
32.6
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 5 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1102
b:32.6
occ:1.00
|
FAG
|
B:ZK11102
|
0.0
|
32.6
|
1.0
|
CAZ
|
B:ZK11102
|
1.4
|
32.6
|
1.0
|
FAH
|
B:ZK11102
|
2.2
|
32.6
|
1.0
|
FAF
|
B:ZK11102
|
2.2
|
32.6
|
1.0
|
CAS
|
B:ZK11102
|
2.3
|
32.6
|
1.0
|
CAJ
|
B:ZK11102
|
2.6
|
32.6
|
1.0
|
OH
|
B:TYR732
|
2.8
|
73.9
|
1.0
|
CB
|
B:PRO478
|
3.5
|
83.0
|
1.0
|
CZ
|
B:TYR732
|
3.5
|
73.9
|
1.0
|
CAR
|
B:ZK11102
|
3.7
|
32.6
|
1.0
|
CE2
|
B:TYR732
|
3.7
|
73.9
|
1.0
|
CE2
|
B:TYR405
|
3.7
|
86.4
|
1.0
|
CG
|
B:PRO478
|
3.9
|
83.0
|
1.0
|
CAV
|
B:ZK11102
|
4.0
|
32.6
|
1.0
|
OE1
|
B:GLU705
|
4.1
|
80.1
|
1.0
|
CE
|
B:MET708
|
4.2
|
84.2
|
1.0
|
CD2
|
B:TYR405
|
4.3
|
86.4
|
1.0
|
CZ
|
B:TYR405
|
4.3
|
86.4
|
1.0
|
NAX
|
B:ZK11102
|
4.4
|
32.6
|
1.0
|
OH
|
B:TYR450
|
4.4
|
96.7
|
1.0
|
OH
|
B:TYR405
|
4.4
|
86.4
|
1.0
|
O
|
B:PRO478
|
4.5
|
83.0
|
1.0
|
OG1
|
B:THR707
|
4.5
|
79.5
|
1.0
|
CE1
|
B:TYR732
|
4.5
|
73.9
|
1.0
|
CG
|
B:GLU402
|
4.6
|
95.3
|
1.0
|
NAP
|
B:ZK11102
|
4.7
|
32.6
|
1.0
|
CAI
|
B:ZK11102
|
4.7
|
32.6
|
1.0
|
CA
|
B:PRO478
|
4.8
|
83.0
|
1.0
|
CD2
|
B:TYR732
|
4.8
|
73.9
|
1.0
|
CAW
|
B:ZK11102
|
4.9
|
32.6
|
1.0
|
CZ
|
B:TYR450
|
5.0
|
96.7
|
1.0
|
CAM
|
B:ZK11102
|
5.0
|
32.6
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 6 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F1102
b:32.6
occ:1.00
|
FAH
|
B:ZK11102
|
0.0
|
32.6
|
1.0
|
CAZ
|
B:ZK11102
|
1.4
|
32.6
|
1.0
|
FAG
|
B:ZK11102
|
2.2
|
32.6
|
1.0
|
FAF
|
B:ZK11102
|
2.2
|
32.6
|
1.0
|
CAS
|
B:ZK11102
|
2.4
|
32.6
|
1.0
|
CAR
|
B:ZK11102
|
3.0
|
32.6
|
1.0
|
NAX
|
B:ZK11102
|
3.0
|
32.6
|
1.0
|
CAN
|
B:ZK11102
|
3.2
|
32.6
|
1.0
|
CG
|
B:GLU402
|
3.3
|
95.3
|
1.0
|
OE2
|
B:GLU402
|
3.3
|
95.3
|
1.0
|
CD
|
B:GLU402
|
3.4
|
95.3
|
1.0
|
CAJ
|
B:ZK11102
|
3.4
|
32.6
|
1.0
|
OH
|
B:TYR450
|
3.5
|
96.7
|
1.0
|
CE
|
B:MET708
|
3.6
|
84.2
|
1.0
|
CAM
|
B:ZK11102
|
3.8
|
32.6
|
1.0
|
SD
|
B:MET708
|
4.0
|
84.2
|
1.0
|
CG
|
B:MET708
|
4.2
|
84.2
|
1.0
|
OE1
|
B:GLU402
|
4.2
|
95.3
|
1.0
|
CAL
|
B:ZK11102
|
4.3
|
32.6
|
1.0
|
CAI
|
B:ZK11102
|
4.3
|
32.6
|
1.0
|
CZ
|
B:TYR450
|
4.5
|
96.7
|
1.0
|
OH
|
B:TYR732
|
4.6
|
73.9
|
1.0
|
CB
|
B:GLU402
|
4.6
|
95.3
|
1.0
|
CE2
|
B:TYR405
|
4.6
|
86.4
|
1.0
|
CAV
|
B:ZK11102
|
4.7
|
32.6
|
1.0
|
CAK
|
B:ZK11102
|
4.7
|
32.6
|
1.0
|
OE1
|
B:GLU705
|
4.8
|
80.1
|
1.0
|
CD2
|
B:TYR405
|
4.9
|
86.4
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 7 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1102
b:13.8
occ:1.00
|
FAF
|
C:ZK11102
|
0.0
|
13.8
|
1.0
|
CAZ
|
C:ZK11102
|
1.4
|
13.8
|
1.0
|
FAG
|
C:ZK11102
|
2.2
|
13.8
|
1.0
|
FAH
|
C:ZK11102
|
2.2
|
13.8
|
1.0
|
CAS
|
C:ZK11102
|
2.4
|
13.8
|
1.0
|
OE1
|
C:GLU705
|
2.4
|
59.4
|
1.0
|
CAR
|
C:ZK11102
|
3.0
|
13.8
|
1.0
|
OH
|
C:TYR732
|
3.1
|
41.9
|
1.0
|
NAX
|
C:ZK11102
|
3.2
|
13.8
|
1.0
|
CAM
|
C:ZK11102
|
3.2
|
13.8
|
1.0
|
CAJ
|
C:ZK11102
|
3.4
|
13.8
|
1.0
|
CD
|
C:GLU705
|
3.5
|
59.4
|
1.0
|
CG
|
C:MET708
|
3.6
|
59.8
|
1.0
|
CAK
|
C:ZK11102
|
3.9
|
13.8
|
1.0
|
CE
|
C:MET708
|
3.9
|
59.8
|
1.0
|
OG1
|
C:THR707
|
4.0
|
53.9
|
1.0
|
CAN
|
C:ZK11102
|
4.1
|
13.8
|
1.0
|
OE2
|
C:GLU705
|
4.2
|
59.4
|
1.0
|
CB
|
C:GLU705
|
4.3
|
59.4
|
1.0
|
CAI
|
C:ZK11102
|
4.3
|
13.8
|
1.0
|
CZ
|
C:TYR732
|
4.4
|
41.9
|
1.0
|
SD
|
C:MET708
|
4.4
|
59.8
|
1.0
|
CG
|
C:GLU705
|
4.4
|
59.4
|
1.0
|
CAL
|
C:ZK11102
|
4.5
|
13.8
|
1.0
|
CAV
|
C:ZK11102
|
4.6
|
13.8
|
1.0
|
CB
|
C:MET708
|
4.8
|
59.8
|
1.0
|
OAQ
|
C:ZK11102
|
4.8
|
13.8
|
1.0
|
CE2
|
C:TYR732
|
4.9
|
41.9
|
1.0
|
N
|
C:MET708
|
5.0
|
59.8
|
1.0
|
CAW
|
C:ZK11102
|
5.0
|
13.8
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 8 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1102
b:13.8
occ:1.00
|
FAG
|
C:ZK11102
|
0.0
|
13.8
|
1.0
|
CAZ
|
C:ZK11102
|
1.4
|
13.8
|
1.0
|
FAF
|
C:ZK11102
|
2.2
|
13.8
|
1.0
|
FAH
|
C:ZK11102
|
2.2
|
13.8
|
1.0
|
CAS
|
C:ZK11102
|
2.3
|
13.8
|
1.0
|
CAJ
|
C:ZK11102
|
2.6
|
13.8
|
1.0
|
OH
|
C:TYR732
|
2.7
|
41.9
|
1.0
|
CZ
|
C:TYR732
|
3.4
|
41.9
|
1.0
|
CB
|
C:PRO478
|
3.4
|
45.3
|
1.0
|
CE2
|
C:TYR732
|
3.6
|
41.9
|
1.0
|
CAR
|
C:ZK11102
|
3.7
|
13.8
|
1.0
|
OE1
|
C:GLU705
|
3.7
|
59.4
|
1.0
|
CE2
|
C:TYR405
|
3.8
|
50.2
|
1.0
|
CG
|
C:PRO478
|
4.0
|
45.3
|
1.0
|
CAV
|
C:ZK11102
|
4.0
|
13.8
|
1.0
|
NAX
|
C:ZK11102
|
4.4
|
13.8
|
1.0
|
CZ
|
C:TYR405
|
4.4
|
50.2
|
1.0
|
CE
|
C:MET708
|
4.4
|
59.8
|
1.0
|
OH
|
C:TYR405
|
4.4
|
50.2
|
1.0
|
CD2
|
C:TYR405
|
4.4
|
50.2
|
1.0
|
OG1
|
C:THR707
|
4.4
|
53.9
|
1.0
|
CE1
|
C:TYR732
|
4.5
|
41.9
|
1.0
|
CG
|
C:GLU402
|
4.6
|
61.4
|
1.0
|
OH
|
C:TYR450
|
4.6
|
61.4
|
1.0
|
O
|
C:PRO478
|
4.6
|
45.3
|
1.0
|
NAP
|
C:ZK11102
|
4.7
|
13.8
|
1.0
|
CAI
|
C:ZK11102
|
4.7
|
13.8
|
1.0
|
CD2
|
C:TYR732
|
4.8
|
41.9
|
1.0
|
CA
|
C:PRO478
|
4.8
|
45.3
|
1.0
|
CD
|
C:GLU705
|
4.8
|
59.4
|
1.0
|
CAW
|
C:ZK11102
|
4.9
|
13.8
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 9 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1102
b:13.8
occ:1.00
|
FAH
|
C:ZK11102
|
0.0
|
13.8
|
1.0
|
CAZ
|
C:ZK11102
|
1.4
|
13.8
|
1.0
|
FAG
|
C:ZK11102
|
2.2
|
13.8
|
1.0
|
FAF
|
C:ZK11102
|
2.2
|
13.8
|
1.0
|
CAS
|
C:ZK11102
|
2.4
|
13.8
|
1.0
|
CAR
|
C:ZK11102
|
3.0
|
13.8
|
1.0
|
NAX
|
C:ZK11102
|
3.1
|
13.8
|
1.0
|
OE2
|
C:GLU402
|
3.2
|
61.4
|
1.0
|
CAN
|
C:ZK11102
|
3.2
|
13.8
|
1.0
|
CD
|
C:GLU402
|
3.3
|
61.4
|
1.0
|
CG
|
C:GLU402
|
3.3
|
61.4
|
1.0
|
CAJ
|
C:ZK11102
|
3.4
|
13.8
|
1.0
|
OH
|
C:TYR450
|
3.6
|
61.4
|
1.0
|
CE
|
C:MET708
|
3.8
|
59.8
|
1.0
|
CAL
|
C:ZK11102
|
3.8
|
13.8
|
1.0
|
CAM
|
C:ZK11102
|
3.9
|
13.8
|
1.0
|
OE1
|
C:GLU402
|
4.1
|
61.4
|
1.0
|
SD
|
C:MET708
|
4.2
|
59.8
|
1.0
|
CG
|
C:MET708
|
4.3
|
59.8
|
1.0
|
CAI
|
C:ZK11102
|
4.3
|
13.8
|
1.0
|
CAK
|
C:ZK11102
|
4.4
|
13.8
|
1.0
|
OE1
|
C:GLU705
|
4.5
|
59.4
|
1.0
|
CZ
|
C:TYR450
|
4.6
|
61.4
|
1.0
|
OH
|
C:TYR732
|
4.6
|
41.9
|
1.0
|
CAV
|
C:ZK11102
|
4.6
|
13.8
|
1.0
|
CE2
|
C:TYR405
|
4.6
|
50.2
|
1.0
|
CB
|
C:GLU402
|
4.7
|
61.4
|
1.0
|
OAQ
|
C:ZK11102
|
4.7
|
13.8
|
1.0
|
CD2
|
C:TYR405
|
5.0
|
50.2
|
1.0
|
CAW
|
C:ZK11102
|
5.0
|
13.8
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 8ss6
Go back to
Fluorine Binding Sites List in 8ss6
Fluorine binding site 10 out
of 12 in the Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structure of Ampa Receptor GLUA2 Complex with Auxiliary Subunits Tarp Gamma-5 and Cornichon-2 Bound to Competitive Antagonist Zk, Channel Blocker Spermidine and Antiepileptic Drug Perampanel (Closed State) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F1103
b:31.8
occ:1.00
|
FAF
|
D:ZK11103
|
0.0
|
31.8
|
1.0
|
CAZ
|
D:ZK11103
|
1.4
|
31.8
|
1.0
|
FAG
|
D:ZK11103
|
2.2
|
31.8
|
1.0
|
FAH
|
D:ZK11103
|
2.2
|
31.8
|
1.0
|
CAS
|
D:ZK11103
|
2.4
|
31.8
|
1.0
|
OE1
|
D:GLU705
|
2.7
|
80.4
|
1.0
|
CAR
|
D:ZK11103
|
3.1
|
31.8
|
1.0
|
OH
|
D:TYR732
|
3.1
|
73.4
|
1.0
|
NAX
|
D:ZK11103
|
3.2
|
31.8
|
1.0
|
CAM
|
D:ZK11103
|
3.2
|
31.8
|
1.0
|
CAJ
|
D:ZK11103
|
3.4
|
31.8
|
1.0
|
CG
|
D:MET708
|
3.4
|
83.9
|
1.0
|
CE
|
D:MET708
|
3.6
|
83.9
|
1.0
|
OG1
|
D:THR707
|
3.6
|
79.2
|
1.0
|
CD
|
D:GLU705
|
3.9
|
80.4
|
1.0
|
SD
|
D:MET708
|
4.1
|
83.9
|
1.0
|
CAN
|
D:ZK11103
|
4.2
|
31.8
|
1.0
|
CZ
|
D:TYR732
|
4.3
|
73.4
|
1.0
|
CAI
|
D:ZK11103
|
4.4
|
31.8
|
1.0
|
CAK
|
D:ZK11103
|
4.4
|
31.8
|
1.0
|
CB
|
D:GLU705
|
4.4
|
80.4
|
1.0
|
CAV
|
D:ZK11103
|
4.6
|
31.8
|
1.0
|
CB
|
D:MET708
|
4.6
|
83.9
|
1.0
|
OE2
|
D:GLU705
|
4.7
|
80.4
|
1.0
|
CG
|
D:GLU705
|
4.7
|
80.4
|
1.0
|
N
|
D:MET708
|
4.8
|
83.9
|
1.0
|
CE2
|
D:TYR732
|
4.8
|
73.4
|
1.0
|
CE2
|
D:TYR405
|
5.0
|
85.4
|
1.0
|
CAW
|
D:ZK11103
|
5.0
|
31.8
|
1.0
|
|
Reference:
S.P.Gangwar,
L.Y.Yen,
M.V.Yelshanskaya,
A.I.Sobolevsky.
Modulation of GLUA2-GAMMA5 Synaptic Complex Desensitization, Polyamine Block and Antiepileptic Perampanel Inhibition By Auxiliary Subunit Cornichon-2 Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01080-X
Page generated: Fri Aug 2 23:59:03 2024
|