Fluorine in PDB 8tzf: Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant)
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant)
(pdb code 8tzf). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant), PDB code: 8tzf:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 8tzf
Go back to
Fluorine Binding Sites List in 8tzf
Fluorine binding site 1 out
of 3 in the Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2602
b:107.1
occ:1.00
|
F26
|
A:T3X2602
|
0.0
|
107.1
|
1.0
|
C25
|
A:T3X2602
|
1.4
|
102.8
|
1.0
|
F27
|
A:T3X2602
|
2.2
|
102.6
|
1.0
|
F28
|
A:T3X2602
|
2.2
|
103.4
|
1.0
|
C13
|
A:T3X2602
|
2.4
|
102.9
|
1.0
|
C12
|
A:T3X2602
|
2.7
|
102.7
|
1.0
|
CD2
|
A:LEU1932
|
3.2
|
57.0
|
1.0
|
C14
|
A:T3X2602
|
3.7
|
103.2
|
1.0
|
O
|
A:ILE2015
|
4.0
|
50.2
|
1.0
|
C11
|
A:T3X2602
|
4.0
|
98.4
|
1.0
|
CG2
|
A:ILE1933
|
4.1
|
41.1
|
1.0
|
C
|
A:ILE2015
|
4.3
|
42.4
|
1.0
|
C17
|
A:T3X2602
|
4.4
|
100.7
|
1.0
|
CA
|
A:ALA2016
|
4.4
|
37.6
|
1.0
|
N
|
A:ALA2016
|
4.5
|
47.5
|
1.0
|
N
|
A:ILE1933
|
4.5
|
35.4
|
1.0
|
CG
|
A:LEU1932
|
4.6
|
46.2
|
1.0
|
CB
|
A:ILE2015
|
4.6
|
28.8
|
1.0
|
O09
|
A:T3X2602
|
4.6
|
99.5
|
1.0
|
N
|
A:ASP2017
|
4.8
|
69.3
|
1.0
|
C15
|
A:T3X2602
|
4.8
|
105.7
|
1.0
|
C
|
A:ALA2016
|
4.8
|
55.5
|
1.0
|
N10
|
A:T3X2602
|
4.9
|
94.6
|
1.0
|
C16
|
A:T3X2602
|
4.9
|
102.1
|
1.0
|
CB
|
A:LEU1932
|
4.9
|
37.9
|
1.0
|
CE2
|
A:TYR1992
|
4.9
|
78.6
|
1.0
|
CB
|
A:ILE1933
|
5.0
|
34.2
|
1.0
|
O
|
A:ILE1933
|
5.0
|
68.9
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 8tzf
Go back to
Fluorine Binding Sites List in 8tzf
Fluorine binding site 2 out
of 3 in the Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2602
b:102.6
occ:1.00
|
F27
|
A:T3X2602
|
0.0
|
102.6
|
1.0
|
C25
|
A:T3X2602
|
1.4
|
102.8
|
1.0
|
F26
|
A:T3X2602
|
2.2
|
107.1
|
1.0
|
F28
|
A:T3X2602
|
2.2
|
103.4
|
1.0
|
C13
|
A:T3X2602
|
2.4
|
102.9
|
1.0
|
C14
|
A:T3X2602
|
3.0
|
103.2
|
1.0
|
C17
|
A:T3X2602
|
3.0
|
100.7
|
1.0
|
CD2
|
A:LEU1932
|
3.2
|
57.0
|
1.0
|
CD1
|
A:LEU1927
|
3.2
|
81.0
|
1.0
|
C12
|
A:T3X2602
|
3.5
|
102.7
|
1.0
|
CD2
|
A:LEU1985
|
4.1
|
72.2
|
1.0
|
CD1
|
A:LEU1932
|
4.2
|
51.1
|
1.0
|
CG
|
A:LEU1932
|
4.3
|
46.2
|
1.0
|
C15
|
A:T3X2602
|
4.3
|
105.7
|
1.0
|
N18
|
A:T3X2602
|
4.3
|
104.0
|
1.0
|
CD1
|
A:LEU1985
|
4.4
|
70.1
|
1.0
|
CG
|
A:LEU1927
|
4.6
|
74.0
|
1.0
|
CG
|
A:LEU1985
|
4.7
|
64.8
|
1.0
|
C11
|
A:T3X2602
|
4.7
|
98.4
|
1.0
|
C23
|
A:T3X2602
|
4.7
|
104.9
|
1.0
|
CB
|
A:LEU1927
|
4.8
|
73.9
|
1.0
|
C19
|
A:T3X2602
|
4.9
|
107.8
|
1.0
|
C16
|
A:T3X2602
|
5.0
|
102.1
|
1.0
|
CB
|
A:LEU1932
|
5.0
|
37.9
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 8tzf
Go back to
Fluorine Binding Sites List in 8tzf
Fluorine binding site 3 out
of 3 in the Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant)
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2602
b:103.4
occ:1.00
|
F28
|
A:T3X2602
|
0.0
|
103.4
|
1.0
|
C25
|
A:T3X2602
|
1.4
|
102.8
|
1.0
|
F26
|
A:T3X2602
|
2.2
|
107.1
|
1.0
|
F27
|
A:T3X2602
|
2.2
|
102.6
|
1.0
|
C13
|
A:T3X2602
|
2.4
|
102.9
|
1.0
|
C14
|
A:T3X2602
|
3.1
|
103.2
|
1.0
|
C17
|
A:T3X2602
|
3.1
|
100.7
|
1.0
|
CE2
|
A:TYR1992
|
3.1
|
78.6
|
1.0
|
C12
|
A:T3X2602
|
3.4
|
102.7
|
1.0
|
CD2
|
A:TYR1992
|
3.6
|
79.8
|
1.0
|
C23
|
A:T3X2602
|
3.8
|
104.9
|
1.0
|
CD2
|
A:LEU1932
|
4.0
|
57.0
|
1.0
|
N18
|
A:T3X2602
|
4.0
|
104.0
|
1.0
|
CD1
|
A:LEU1985
|
4.1
|
70.1
|
1.0
|
CB
|
A:ASP2017
|
4.2
|
71.0
|
1.0
|
CZ
|
A:TYR1992
|
4.3
|
76.5
|
1.0
|
C15
|
A:T3X2602
|
4.3
|
105.7
|
1.0
|
OH
|
A:TYR1992
|
4.6
|
72.8
|
1.0
|
C11
|
A:T3X2602
|
4.6
|
98.4
|
1.0
|
CG2
|
A:ILE2015
|
4.7
|
42.2
|
1.0
|
N
|
A:ASP2017
|
4.8
|
69.3
|
1.0
|
CB
|
A:ILE2015
|
4.8
|
28.8
|
1.0
|
C
|
A:ALA2016
|
4.8
|
55.5
|
1.0
|
CG
|
A:TYR1992
|
5.0
|
74.0
|
1.0
|
C16
|
A:T3X2602
|
5.0
|
102.1
|
1.0
|
C19
|
A:T3X2602
|
5.0
|
107.8
|
1.0
|
|
Reference:
A.Villagran-Suarez,
M.Sanz-Murillo,
J.Alegrio-Louro,
A.Leschziner.
Structure of Full Length LRRK2 Bound to Gzd-824 (I2020T Mutant) To Be Published.
Page generated: Sat Aug 3 00:45:56 2024
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