Fluorine in PDB 8u2m: Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Protein crystallography data
The structure of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide, PDB code: 8u2m
was solved by
M.H.Hansen,
M.J.Cryle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.80 /
1.79
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
61.674,
95.607,
105.763,
90,
92.71,
90
|
R / Rfree (%)
|
19.9 /
22.9
|
Other elements in 8u2m:
The structure of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
(pdb code 8u2m). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide, PDB code: 8u2m:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 1 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F406
b:51.8
occ:1.00
|
F1
|
B:TFA406
|
0.0
|
51.8
|
1.0
|
C2
|
B:TFA406
|
1.4
|
64.1
|
1.0
|
F3
|
B:TFA406
|
2.2
|
58.2
|
1.0
|
F2
|
B:TFA406
|
2.2
|
56.4
|
1.0
|
C1
|
B:TFA406
|
2.4
|
59.6
|
1.0
|
HB3
|
B:HIS254
|
2.4
|
31.9
|
1.0
|
HD13
|
B:LEU257
|
2.5
|
32.3
|
1.0
|
HG
|
B:LEU257
|
2.5
|
28.1
|
1.0
|
HB2
|
B:HIS254
|
2.7
|
31.9
|
1.0
|
O
|
B:TFA406
|
2.7
|
32.4
|
1.0
|
HD21
|
B:LEU257
|
2.8
|
30.4
|
1.0
|
CB
|
B:HIS254
|
2.9
|
26.5
|
1.0
|
CG
|
B:LEU257
|
3.1
|
23.4
|
1.0
|
CD1
|
B:LEU257
|
3.1
|
26.9
|
1.0
|
CG
|
B:HIS254
|
3.2
|
27.9
|
1.0
|
HD11
|
B:LEU257
|
3.4
|
32.3
|
1.0
|
CD2
|
B:LEU257
|
3.4
|
25.3
|
1.0
|
OXT
|
B:TFA406
|
3.4
|
46.3
|
1.0
|
ND1
|
B:HIS254
|
3.7
|
31.5
|
1.0
|
HD23
|
B:LEU257
|
3.8
|
30.4
|
1.0
|
CD2
|
B:HIS254
|
3.9
|
31.4
|
1.0
|
HD12
|
B:LEU257
|
4.0
|
32.3
|
1.0
|
HG2
|
B:ARG250
|
4.0
|
23.1
|
1.0
|
HD2
|
B:HIS254
|
4.1
|
37.6
|
1.0
|
HB2
|
C:PRO178
|
4.2
|
42.2
|
1.0
|
HD22
|
B:LEU257
|
4.2
|
30.4
|
1.0
|
HD3
|
B:ARG250
|
4.2
|
28.9
|
1.0
|
HG2
|
B:GLU256
|
4.2
|
40.9
|
1.0
|
HB3
|
C:ALA179
|
4.2
|
41.2
|
1.0
|
HA
|
C:ALA179
|
4.3
|
37.4
|
1.0
|
O
|
B:HIS254
|
4.3
|
28.8
|
1.0
|
CA
|
B:HIS254
|
4.3
|
26.2
|
1.0
|
OE2
|
B:GLU256
|
4.3
|
39.0
|
1.0
|
HB2
|
C:ALA179
|
4.5
|
41.2
|
1.0
|
HG3
|
B:ARG250
|
4.5
|
23.1
|
1.0
|
CE1
|
B:HIS254
|
4.5
|
36.2
|
1.0
|
CB
|
B:LEU257
|
4.5
|
26.1
|
1.0
|
NE2
|
B:HIS254
|
4.6
|
40.1
|
1.0
|
HG23
|
B:VAL325
|
4.6
|
36.6
|
1.0
|
HG22
|
B:VAL325
|
4.6
|
36.6
|
1.0
|
CG
|
B:ARG250
|
4.6
|
19.2
|
1.0
|
HH11
|
B:ARG250
|
4.7
|
29.8
|
1.0
|
H
|
B:LEU257
|
4.7
|
30.8
|
1.0
|
HB
|
B:VAL325
|
4.7
|
27.8
|
1.0
|
CB
|
C:ALA179
|
4.7
|
34.4
|
1.0
|
HA
|
B:HIS254
|
4.7
|
31.5
|
1.0
|
HB2
|
B:LEU257
|
4.7
|
31.3
|
1.0
|
H
|
C:ALA179
|
4.7
|
41.2
|
1.0
|
N
|
C:ALA179
|
4.8
|
34.3
|
1.0
|
CD
|
B:GLU256
|
4.8
|
33.1
|
1.0
|
CA
|
C:ALA179
|
4.8
|
31.2
|
1.0
|
C
|
B:HIS254
|
4.8
|
26.8
|
1.0
|
CD
|
B:ARG250
|
4.9
|
24.1
|
1.0
|
CG
|
B:GLU256
|
4.9
|
34.0
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 2 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F406
b:56.4
occ:1.00
|
F2
|
B:TFA406
|
0.0
|
56.4
|
1.0
|
C2
|
B:TFA406
|
1.4
|
64.1
|
1.0
|
F1
|
B:TFA406
|
2.2
|
51.8
|
1.0
|
F3
|
B:TFA406
|
2.3
|
58.2
|
1.0
|
C1
|
B:TFA406
|
2.3
|
59.6
|
1.0
|
HB2
|
C:ALA179
|
2.6
|
41.2
|
1.0
|
ND1
|
B:HIS254
|
2.8
|
31.5
|
1.0
|
O
|
B:TFA406
|
2.9
|
32.4
|
1.0
|
HB3
|
C:ALA179
|
3.0
|
41.2
|
1.0
|
CG
|
B:HIS254
|
3.1
|
27.9
|
1.0
|
CB
|
C:ALA179
|
3.1
|
34.4
|
1.0
|
CE1
|
B:HIS254
|
3.1
|
36.2
|
1.0
|
HA
|
C:ALA179
|
3.2
|
37.4
|
1.0
|
OXT
|
B:TFA406
|
3.2
|
46.3
|
1.0
|
HB3
|
B:HIS254
|
3.4
|
31.9
|
1.0
|
HE1
|
B:HIS254
|
3.5
|
43.5
|
1.0
|
CD2
|
B:HIS254
|
3.6
|
31.4
|
1.0
|
NE2
|
B:HIS254
|
3.6
|
40.1
|
1.0
|
CA
|
C:ALA179
|
3.7
|
31.2
|
1.0
|
CB
|
B:HIS254
|
3.7
|
26.5
|
1.0
|
HB2
|
B:HIS254
|
4.0
|
31.9
|
1.0
|
HB1
|
C:ALA179
|
4.0
|
41.2
|
1.0
|
HE2
|
B:HIS254
|
4.1
|
48.2
|
1.0
|
HD2
|
B:HIS254
|
4.2
|
37.6
|
1.0
|
OE2
|
B:GLU256
|
4.2
|
39.0
|
1.0
|
N
|
C:ALA179
|
4.3
|
34.3
|
1.0
|
H
|
C:ALA179
|
4.3
|
41.2
|
1.0
|
HD13
|
B:LEU257
|
4.6
|
32.3
|
1.0
|
HD21
|
B:LEU257
|
4.7
|
30.4
|
1.0
|
HG
|
B:LEU257
|
4.7
|
28.1
|
1.0
|
HH11
|
B:ARG250
|
4.9
|
29.8
|
1.0
|
O
|
B:HOH598
|
4.9
|
33.6
|
1.0
|
C
|
C:ALA179
|
5.0
|
36.9
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 3 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F406
b:58.2
occ:1.00
|
F3
|
B:TFA406
|
0.0
|
58.2
|
1.0
|
C2
|
B:TFA406
|
1.4
|
64.1
|
1.0
|
F1
|
B:TFA406
|
2.2
|
51.8
|
1.0
|
F2
|
B:TFA406
|
2.3
|
56.4
|
1.0
|
HB3
|
C:ALA179
|
2.3
|
41.2
|
1.0
|
C1
|
B:TFA406
|
2.4
|
59.6
|
1.0
|
H
|
C:ALA179
|
2.6
|
41.2
|
1.0
|
OXT
|
B:TFA406
|
2.6
|
46.3
|
1.0
|
N
|
C:ALA179
|
2.7
|
34.3
|
1.0
|
HA
|
C:ALA179
|
2.8
|
37.4
|
1.0
|
CB
|
C:ALA179
|
2.9
|
34.4
|
1.0
|
CA
|
C:ALA179
|
2.9
|
31.2
|
1.0
|
HB2
|
C:ALA179
|
3.1
|
41.2
|
1.0
|
HD21
|
B:LEU257
|
3.1
|
30.4
|
1.0
|
HB2
|
C:PRO178
|
3.1
|
42.2
|
1.0
|
O
|
B:HOH598
|
3.3
|
33.6
|
1.0
|
O
|
B:TFA406
|
3.5
|
32.4
|
1.0
|
C
|
C:PRO178
|
3.5
|
39.5
|
1.0
|
HB
|
B:VAL325
|
3.8
|
27.8
|
1.0
|
HB1
|
C:ALA179
|
3.8
|
41.2
|
1.0
|
HD23
|
B:LEU257
|
3.8
|
30.4
|
1.0
|
CD2
|
B:LEU257
|
3.8
|
25.3
|
1.0
|
HG
|
B:LEU257
|
3.8
|
28.1
|
1.0
|
CB
|
C:PRO178
|
4.0
|
35.2
|
1.0
|
HB3
|
B:HIS254
|
4.1
|
31.9
|
1.0
|
HD2
|
C:PRO178
|
4.1
|
37.8
|
1.0
|
CA
|
C:PRO178
|
4.2
|
38.8
|
1.0
|
HD13
|
B:LEU257
|
4.2
|
32.3
|
1.0
|
O
|
C:PRO178
|
4.2
|
35.4
|
1.0
|
CG
|
B:LEU257
|
4.3
|
23.4
|
1.0
|
C
|
C:ALA179
|
4.5
|
36.9
|
1.0
|
N
|
C:PRO178
|
4.5
|
35.2
|
1.0
|
H
|
B:VAL325
|
4.5
|
35.5
|
1.0
|
HG22
|
B:VAL325
|
4.6
|
36.6
|
1.0
|
HG2
|
B:GLU256
|
4.6
|
40.9
|
1.0
|
HB3
|
C:PRO178
|
4.6
|
42.2
|
1.0
|
HD22
|
B:LEU257
|
4.6
|
30.4
|
1.0
|
OE2
|
B:GLU256
|
4.6
|
39.0
|
1.0
|
CD
|
C:PRO178
|
4.6
|
31.5
|
1.0
|
ND1
|
B:HIS254
|
4.7
|
31.5
|
1.0
|
CB
|
B:VAL325
|
4.7
|
23.2
|
1.0
|
CB
|
B:HIS254
|
4.7
|
26.5
|
1.0
|
CG
|
B:HIS254
|
4.8
|
27.9
|
1.0
|
HG2
|
C:PRO178
|
4.8
|
38.5
|
1.0
|
CG
|
C:PRO178
|
4.8
|
32.1
|
1.0
|
CD1
|
B:LEU257
|
4.8
|
26.9
|
1.0
|
HB2
|
B:HIS254
|
4.8
|
31.9
|
1.0
|
HG23
|
B:VAL325
|
4.8
|
36.6
|
1.0
|
HG3
|
B:GLU256
|
4.9
|
40.9
|
1.0
|
CG2
|
B:VAL325
|
4.9
|
30.5
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 4 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F407
b:47.8
occ:1.00
|
F1
|
B:TFA407
|
0.0
|
47.8
|
1.0
|
C2
|
B:TFA407
|
1.4
|
62.1
|
1.0
|
F2
|
B:TFA407
|
2.2
|
56.2
|
1.0
|
F3
|
B:TFA407
|
2.2
|
54.7
|
1.0
|
C1
|
B:TFA407
|
2.3
|
68.8
|
1.0
|
HD12
|
B:LEU258
|
2.8
|
38.9
|
1.0
|
O
|
B:TFA407
|
2.9
|
62.9
|
1.0
|
HD13
|
B:LEU258
|
3.0
|
38.9
|
1.0
|
OXT
|
B:TFA407
|
3.2
|
42.9
|
1.0
|
HD13
|
B:LEU361
|
3.2
|
30.3
|
1.0
|
CD1
|
B:LEU258
|
3.3
|
32.4
|
1.0
|
HD21
|
B:LEU361
|
3.3
|
39.6
|
1.0
|
HB3
|
B:LEU251
|
3.3
|
22.5
|
1.0
|
HD11
|
B:LEU258
|
3.7
|
38.9
|
1.0
|
HB3
|
B:LEU361
|
3.7
|
21.2
|
1.0
|
CD1
|
B:LEU361
|
4.1
|
25.2
|
1.0
|
HA
|
B:VAL252
|
4.1
|
26.4
|
1.0
|
HD11
|
B:LEU368
|
4.1
|
42.3
|
1.0
|
HB2
|
B:LEU251
|
4.1
|
22.5
|
1.0
|
CB
|
B:LEU251
|
4.1
|
18.7
|
1.0
|
CD2
|
B:LEU361
|
4.2
|
33.0
|
1.0
|
HB3
|
B:PRO255
|
4.2
|
35.9
|
1.0
|
O
|
B:LEU251
|
4.2
|
22.5
|
1.0
|
HD13
|
B:LEU251
|
4.2
|
23.8
|
1.0
|
HB2
|
B:LEU368
|
4.3
|
36.6
|
1.0
|
HA
|
B:PRO255
|
4.4
|
37.8
|
1.0
|
C
|
B:LEU251
|
4.4
|
22.0
|
1.0
|
HD23
|
B:LEU361
|
4.4
|
39.6
|
1.0
|
HG13
|
B:VAL252
|
4.4
|
33.1
|
1.0
|
CG
|
B:LEU361
|
4.5
|
23.0
|
1.0
|
HD11
|
B:LEU361
|
4.5
|
30.3
|
1.0
|
CB
|
B:LEU361
|
4.5
|
17.6
|
1.0
|
HG11
|
B:VAL252
|
4.5
|
33.1
|
1.0
|
H
|
B:LEU368
|
4.6
|
35.8
|
1.0
|
CG
|
B:LEU258
|
4.6
|
33.5
|
1.0
|
HG
|
B:LEU258
|
4.7
|
40.2
|
1.0
|
HD12
|
B:LEU361
|
4.7
|
30.3
|
1.0
|
N
|
B:VAL252
|
4.7
|
19.4
|
1.0
|
HH11
|
B:ARG367
|
4.8
|
39.8
|
1.0
|
HG
|
B:LEU368
|
4.8
|
36.2
|
1.0
|
CA
|
B:VAL252
|
4.9
|
22.0
|
1.0
|
HD22
|
B:LEU361
|
4.9
|
39.6
|
1.0
|
HB2
|
B:LEU361
|
4.9
|
21.2
|
1.0
|
CA
|
B:LEU251
|
4.9
|
21.1
|
1.0
|
CG1
|
B:VAL252
|
4.9
|
27.6
|
1.0
|
CD1
|
B:LEU251
|
5.0
|
19.8
|
1.0
|
CB
|
B:PRO255
|
5.0
|
29.9
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 5 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F407
b:56.2
occ:1.00
|
F2
|
B:TFA407
|
0.0
|
56.2
|
1.0
|
C2
|
B:TFA407
|
1.4
|
62.1
|
1.0
|
F1
|
B:TFA407
|
2.2
|
47.8
|
1.0
|
F3
|
B:TFA407
|
2.2
|
54.7
|
1.0
|
C1
|
B:TFA407
|
2.4
|
68.8
|
1.0
|
OXT
|
B:TFA407
|
2.6
|
42.9
|
1.0
|
HD11
|
B:LEU368
|
2.6
|
42.3
|
1.0
|
HG
|
B:LEU368
|
2.7
|
36.2
|
1.0
|
HD21
|
B:LEU361
|
2.7
|
39.6
|
1.0
|
HB2
|
B:LEU368
|
2.9
|
36.6
|
1.0
|
H
|
B:LEU368
|
3.0
|
35.8
|
1.0
|
CG
|
B:LEU368
|
3.2
|
30.2
|
1.0
|
CD1
|
B:LEU368
|
3.3
|
35.2
|
1.0
|
O
|
B:TFA407
|
3.5
|
62.9
|
1.0
|
CB
|
B:LEU368
|
3.5
|
30.5
|
1.0
|
HD13
|
B:LEU368
|
3.6
|
42.3
|
1.0
|
CD2
|
B:LEU361
|
3.6
|
33.0
|
1.0
|
O
|
B:LEU366
|
3.7
|
39.1
|
1.0
|
N
|
B:LEU368
|
3.7
|
29.8
|
1.0
|
HD23
|
B:LEU361
|
3.9
|
39.6
|
1.0
|
HB3
|
B:LEU361
|
4.0
|
21.2
|
1.0
|
HD22
|
B:LEU361
|
4.0
|
39.6
|
1.0
|
HD12
|
B:LEU368
|
4.1
|
42.3
|
1.0
|
HG13
|
B:VAL252
|
4.1
|
33.1
|
1.0
|
HA
|
B:ARG367
|
4.2
|
38.0
|
1.0
|
HD13
|
B:LEU361
|
4.2
|
30.3
|
1.0
|
CA
|
B:LEU368
|
4.2
|
29.6
|
1.0
|
HB3
|
B:LEU368
|
4.3
|
36.6
|
1.0
|
O
|
B:HOH542
|
4.4
|
26.8
|
1.0
|
HH11
|
B:ARG367
|
4.4
|
39.8
|
1.0
|
CG
|
B:LEU361
|
4.6
|
23.0
|
1.0
|
HD12
|
B:LEU258
|
4.6
|
38.9
|
1.0
|
CD2
|
B:LEU368
|
4.7
|
34.8
|
1.0
|
C
|
B:ARG367
|
4.7
|
36.0
|
1.0
|
C
|
B:LEU366
|
4.7
|
36.7
|
1.0
|
HD13
|
B:LEU258
|
4.8
|
38.9
|
1.0
|
CB
|
B:LEU361
|
4.8
|
17.6
|
1.0
|
HA
|
B:VAL252
|
4.8
|
26.4
|
1.0
|
HD2
|
B:ARG367
|
4.8
|
57.8
|
1.0
|
CA
|
B:ARG367
|
4.8
|
31.6
|
1.0
|
CD1
|
B:LEU361
|
4.9
|
25.2
|
1.0
|
HD11
|
B:LEU122
|
4.9
|
33.9
|
1.0
|
O
|
B:LEU368
|
4.9
|
36.5
|
1.0
|
HD22
|
B:LEU368
|
4.9
|
41.8
|
1.0
|
HG11
|
B:VAL252
|
4.9
|
33.1
|
1.0
|
HD21
|
B:LEU368
|
4.9
|
41.8
|
1.0
|
CG1
|
B:VAL252
|
5.0
|
27.6
|
1.0
|
HB2
|
B:LEU366
|
5.0
|
35.3
|
1.0
|
HA
|
B:LEU368
|
5.0
|
35.5
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 6 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F407
b:54.7
occ:1.00
|
F3
|
B:TFA407
|
0.0
|
54.7
|
1.0
|
C2
|
B:TFA407
|
1.4
|
62.1
|
1.0
|
F2
|
B:TFA407
|
2.2
|
56.2
|
1.0
|
F1
|
B:TFA407
|
2.2
|
47.8
|
1.0
|
C1
|
B:TFA407
|
2.4
|
68.8
|
1.0
|
HB3
|
B:LEU361
|
2.5
|
21.2
|
1.0
|
HD21
|
B:LEU361
|
2.7
|
39.6
|
1.0
|
O
|
B:TFA407
|
2.8
|
62.9
|
1.0
|
HD11
|
B:LEU258
|
3.0
|
38.9
|
1.0
|
HD13
|
B:LEU258
|
3.2
|
38.9
|
1.0
|
HD12
|
B:LEU258
|
3.2
|
38.9
|
1.0
|
CD1
|
B:LEU258
|
3.3
|
32.4
|
1.0
|
OXT
|
B:TFA407
|
3.4
|
42.9
|
1.0
|
CB
|
B:LEU361
|
3.4
|
17.6
|
1.0
|
CD2
|
B:LEU361
|
3.6
|
33.0
|
1.0
|
HD13
|
B:LEU361
|
3.7
|
30.3
|
1.0
|
O
|
B:LEU361
|
3.7
|
26.8
|
1.0
|
O
|
B:HOH542
|
3.8
|
26.8
|
1.0
|
O
|
B:LEU366
|
3.9
|
39.1
|
1.0
|
CG
|
B:LEU361
|
4.0
|
23.0
|
1.0
|
HD22
|
B:LEU361
|
4.0
|
39.6
|
1.0
|
HA
|
B:LEU361
|
4.0
|
22.9
|
1.0
|
C
|
B:LEU361
|
4.0
|
22.7
|
1.0
|
HB2
|
B:LEU361
|
4.0
|
21.2
|
1.0
|
CA
|
B:LEU361
|
4.1
|
19.1
|
1.0
|
HD23
|
B:LEU361
|
4.3
|
39.6
|
1.0
|
CD1
|
B:LEU361
|
4.3
|
25.2
|
1.0
|
HD11
|
B:LEU368
|
4.6
|
42.3
|
1.0
|
HG
|
B:LEU368
|
4.6
|
36.2
|
1.0
|
H
|
B:LEU368
|
4.6
|
35.8
|
1.0
|
CG
|
B:LEU258
|
4.8
|
33.5
|
1.0
|
HA
|
B:ARG367
|
4.8
|
38.0
|
1.0
|
N
|
B:ARG362
|
4.9
|
24.1
|
1.0
|
HG
|
B:LEU361
|
4.9
|
27.6
|
1.0
|
HD12
|
B:LEU361
|
4.9
|
30.3
|
1.0
|
HA
|
B:ARG362
|
4.9
|
35.1
|
1.0
|
HD11
|
B:LEU361
|
5.0
|
30.3
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 7 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:55.7
occ:1.00
|
F1
|
C:TFA402
|
0.0
|
55.7
|
1.0
|
C2
|
C:TFA402
|
1.4
|
67.1
|
1.0
|
F3
|
C:TFA402
|
2.2
|
54.8
|
1.0
|
F2
|
C:TFA402
|
2.2
|
48.1
|
1.0
|
C1
|
C:TFA402
|
2.3
|
54.6
|
1.0
|
ND1
|
C:HIS254
|
2.5
|
42.6
|
1.0
|
HD1
|
C:HIS254
|
2.7
|
51.1
|
1.0
|
CG
|
C:HIS254
|
2.8
|
37.3
|
1.0
|
CE1
|
C:HIS254
|
2.9
|
49.7
|
1.0
|
O
|
C:TFA402
|
3.0
|
33.5
|
1.0
|
HB3
|
C:HIS254
|
3.1
|
41.4
|
1.0
|
OXT
|
C:TFA402
|
3.2
|
29.5
|
1.0
|
CD2
|
C:HIS254
|
3.3
|
46.8
|
1.0
|
HE1
|
C:HIS254
|
3.3
|
59.6
|
1.0
|
NE2
|
C:HIS254
|
3.4
|
46.8
|
1.0
|
CB
|
C:HIS254
|
3.5
|
34.5
|
1.0
|
HB2
|
C:HIS254
|
3.7
|
41.4
|
1.0
|
HD2
|
C:HIS254
|
4.0
|
56.1
|
1.0
|
OE2
|
C:GLU256
|
4.0
|
51.0
|
1.0
|
HG
|
C:LEU257
|
4.3
|
48.4
|
1.0
|
HD22
|
C:LEU257
|
4.5
|
41.1
|
1.0
|
HD12
|
C:LEU257
|
4.6
|
43.1
|
1.0
|
HH11
|
C:ARG250
|
4.7
|
32.9
|
1.0
|
O
|
C:HOH554
|
4.8
|
24.4
|
1.0
|
CA
|
C:HIS254
|
4.9
|
35.0
|
1.0
|
HD13
|
C:LEU257
|
4.9
|
43.1
|
1.0
|
CD
|
C:GLU256
|
4.9
|
45.7
|
1.0
|
HA
|
C:HIS254
|
4.9
|
42.0
|
1.0
|
HG2
|
C:GLU256
|
4.9
|
57.9
|
1.0
|
O
|
C:HOH504
|
5.0
|
37.9
|
1.0
|
CG
|
C:LEU257
|
5.0
|
40.3
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 8 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:48.1
occ:1.00
|
F2
|
C:TFA402
|
0.0
|
48.1
|
1.0
|
C2
|
C:TFA402
|
1.4
|
67.1
|
1.0
|
F3
|
C:TFA402
|
2.2
|
54.8
|
1.0
|
F1
|
C:TFA402
|
2.2
|
55.7
|
1.0
|
C1
|
C:TFA402
|
2.4
|
54.6
|
1.0
|
OXT
|
C:TFA402
|
2.7
|
29.5
|
1.0
|
HD22
|
C:LEU257
|
2.9
|
41.1
|
1.0
|
O
|
C:HOH554
|
3.3
|
24.4
|
1.0
|
HG
|
C:LEU257
|
3.5
|
48.4
|
1.0
|
O
|
C:TFA402
|
3.5
|
33.5
|
1.0
|
HB
|
C:VAL325
|
3.6
|
25.5
|
1.0
|
CD2
|
C:LEU257
|
3.6
|
34.3
|
1.0
|
HD21
|
C:LEU257
|
3.6
|
41.1
|
1.0
|
HB3
|
C:HIS254
|
3.9
|
41.4
|
1.0
|
HG22
|
C:VAL325
|
4.0
|
35.4
|
1.0
|
CG
|
C:LEU257
|
4.0
|
40.3
|
1.0
|
HD12
|
C:LEU257
|
4.1
|
43.1
|
1.0
|
H
|
C:VAL325
|
4.3
|
29.4
|
1.0
|
HG2
|
C:GLU256
|
4.3
|
57.9
|
1.0
|
HD1
|
C:HIS254
|
4.4
|
51.1
|
1.0
|
HD23
|
C:LEU257
|
4.4
|
41.1
|
1.0
|
CB
|
C:VAL325
|
4.5
|
21.2
|
1.0
|
ND1
|
C:HIS254
|
4.5
|
42.6
|
1.0
|
CD1
|
C:LEU257
|
4.5
|
36.0
|
1.0
|
CB
|
C:HIS254
|
4.5
|
34.5
|
1.0
|
CG
|
C:HIS254
|
4.6
|
37.3
|
1.0
|
OE2
|
C:GLU256
|
4.6
|
51.0
|
1.0
|
HG3
|
C:GLU256
|
4.6
|
57.9
|
1.0
|
HB2
|
C:HIS254
|
4.6
|
41.4
|
1.0
|
CG2
|
C:VAL325
|
4.6
|
29.5
|
1.0
|
HD13
|
C:LEU257
|
4.8
|
43.1
|
1.0
|
CG
|
C:GLU256
|
4.9
|
48.3
|
1.0
|
HG21
|
C:VAL325
|
5.0
|
35.4
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 9 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F402
b:54.8
occ:1.00
|
F3
|
C:TFA402
|
0.0
|
54.8
|
1.0
|
C2
|
C:TFA402
|
1.4
|
67.1
|
1.0
|
F2
|
C:TFA402
|
2.2
|
48.1
|
1.0
|
F1
|
C:TFA402
|
2.2
|
55.7
|
1.0
|
C1
|
C:TFA402
|
2.3
|
54.6
|
1.0
|
HD12
|
C:LEU257
|
2.4
|
43.1
|
1.0
|
HG
|
C:LEU257
|
2.6
|
48.4
|
1.0
|
HD22
|
C:LEU257
|
2.7
|
41.1
|
1.0
|
O
|
C:TFA402
|
2.7
|
33.5
|
1.0
|
HB3
|
C:HIS254
|
2.8
|
41.4
|
1.0
|
HB2
|
C:HIS254
|
2.8
|
41.4
|
1.0
|
HD13
|
C:LEU257
|
2.9
|
43.1
|
1.0
|
CD1
|
C:LEU257
|
2.9
|
36.0
|
1.0
|
CG
|
C:LEU257
|
3.0
|
40.3
|
1.0
|
CB
|
C:HIS254
|
3.1
|
34.5
|
1.0
|
CD2
|
C:LEU257
|
3.3
|
34.3
|
1.0
|
CG
|
C:HIS254
|
3.3
|
37.3
|
1.0
|
OXT
|
C:TFA402
|
3.4
|
29.5
|
1.0
|
HG22
|
C:VAL325
|
3.5
|
35.4
|
1.0
|
HG2
|
C:ARG250
|
3.5
|
34.1
|
1.0
|
HD3
|
C:ARG250
|
3.6
|
25.0
|
1.0
|
CD2
|
C:HIS254
|
3.8
|
46.8
|
1.0
|
HD21
|
C:LEU257
|
3.8
|
41.1
|
1.0
|
HD11
|
C:LEU257
|
3.8
|
43.1
|
1.0
|
ND1
|
C:HIS254
|
3.9
|
42.6
|
1.0
|
HD2
|
C:HIS254
|
4.0
|
56.1
|
1.0
|
HG3
|
C:ARG250
|
4.0
|
34.1
|
1.0
|
HD23
|
C:LEU257
|
4.0
|
41.1
|
1.0
|
CG
|
C:ARG250
|
4.1
|
28.5
|
1.0
|
HD1
|
C:HIS254
|
4.1
|
51.1
|
1.0
|
HH11
|
C:ARG250
|
4.1
|
32.9
|
1.0
|
CD
|
C:ARG250
|
4.3
|
20.9
|
1.0
|
HB
|
C:VAL325
|
4.3
|
25.5
|
1.0
|
CG2
|
C:VAL325
|
4.4
|
29.5
|
1.0
|
CB
|
C:LEU257
|
4.5
|
37.4
|
1.0
|
NE2
|
C:HIS254
|
4.5
|
46.8
|
1.0
|
CE1
|
C:HIS254
|
4.5
|
49.7
|
1.0
|
O
|
C:HIS254
|
4.6
|
35.7
|
1.0
|
CA
|
C:HIS254
|
4.6
|
35.0
|
1.0
|
HG2
|
C:GLU256
|
4.6
|
57.9
|
1.0
|
HD2
|
C:ARG250
|
4.7
|
25.0
|
1.0
|
HB2
|
C:LEU257
|
4.7
|
44.9
|
1.0
|
HG21
|
C:VAL325
|
4.8
|
35.4
|
1.0
|
OE2
|
C:GLU256
|
4.9
|
51.0
|
1.0
|
H
|
C:LEU257
|
4.9
|
44.6
|
1.0
|
CB
|
C:VAL325
|
4.9
|
21.2
|
1.0
|
O
|
C:ARG250
|
5.0
|
32.0
|
1.0
|
NH1
|
C:ARG250
|
5.0
|
27.4
|
1.0
|
H
|
C:VAL325
|
5.0
|
29.4
|
1.0
|
HB3
|
C:LEU257
|
5.0
|
44.9
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 8u2m
Go back to
Fluorine Binding Sites List in 8u2m
Fluorine binding site 10 out
of 12 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F403
b:96.9
occ:1.00
|
F1
|
C:TFA403
|
0.0
|
96.9
|
1.0
|
C2
|
C:TFA403
|
1.4
|
104.2
|
1.0
|
F3
|
C:TFA403
|
2.2
|
81.8
|
1.0
|
F2
|
C:TFA403
|
2.3
|
88.5
|
1.0
|
C1
|
C:TFA403
|
2.3
|
99.4
|
1.0
|
HE
|
C:ARG230
|
2.4
|
57.5
|
1.0
|
O
|
C:TFA403
|
2.6
|
88.6
|
1.0
|
HA
|
C:ALA231
|
2.7
|
45.7
|
1.0
|
HG2
|
C:ARG230
|
2.9
|
56.1
|
1.0
|
HB3
|
C:ARG230
|
3.0
|
43.7
|
1.0
|
NE
|
C:ARG230
|
3.1
|
47.9
|
1.0
|
N
|
C:ALA231
|
3.2
|
34.0
|
1.0
|
CA
|
C:ALA231
|
3.3
|
38.1
|
1.0
|
C
|
C:ARG230
|
3.4
|
33.5
|
1.0
|
HH22
|
C:ARG230
|
3.4
|
66.5
|
1.0
|
HB2
|
C:ALA231
|
3.4
|
39.7
|
1.0
|
H
|
C:ALA231
|
3.4
|
40.8
|
1.0
|
OXT
|
C:TFA403
|
3.5
|
88.5
|
1.0
|
CG
|
C:ARG230
|
3.5
|
46.8
|
1.0
|
O
|
C:ARG230
|
3.6
|
34.2
|
1.0
|
CB
|
C:ARG230
|
3.6
|
36.4
|
1.0
|
HE22
|
C:GLN84
|
3.7
|
53.4
|
1.0
|
CD
|
C:ARG230
|
3.9
|
54.6
|
1.0
|
CB
|
C:ALA231
|
3.9
|
33.1
|
1.0
|
HB3
|
C:HIS234
|
3.9
|
40.2
|
1.0
|
NH2
|
C:ARG230
|
4.0
|
55.4
|
1.0
|
CZ
|
C:ARG230
|
4.0
|
52.2
|
1.0
|
O
|
C:ASN227
|
4.1
|
29.7
|
1.0
|
HD2
|
C:ARG230
|
4.1
|
65.5
|
1.0
|
CA
|
C:ARG230
|
4.1
|
37.0
|
1.0
|
NE2
|
C:GLN84
|
4.3
|
44.5
|
1.0
|
HB1
|
C:ALA231
|
4.4
|
39.7
|
1.0
|
HB2
|
C:HIS234
|
4.4
|
40.2
|
1.0
|
HG3
|
C:ARG230
|
4.4
|
56.1
|
1.0
|
HE21
|
C:GLN84
|
4.4
|
53.4
|
1.0
|
HB2
|
C:ARG230
|
4.5
|
43.7
|
1.0
|
CB
|
C:HIS234
|
4.6
|
33.5
|
1.0
|
HB3
|
C:ALA231
|
4.6
|
39.7
|
1.0
|
C
|
C:ALA231
|
4.7
|
32.9
|
1.0
|
HG2
|
C:ARG188
|
4.7
|
58.3
|
1.0
|
HD3
|
C:ARG230
|
4.7
|
65.5
|
1.0
|
HH21
|
C:ARG230
|
4.7
|
66.5
|
1.0
|
HA
|
C:ARG230
|
4.8
|
44.4
|
1.0
|
H
|
C:HIS234
|
4.9
|
35.0
|
1.0
|
|
Reference:
M.H.Hansen,
A.Keto,
M.Treisman,
V.M.Sasi,
L.Coe,
Y.Zhao,
L.Padva,
C.Hess,
V.Leichthammer,
D.L.Machell,
R.B.Schittenhelm,
C.J.Jackson,
J.Tailhades,
M.Crusemann,
J.J.De Voss,
E.H.Krenske,
M.J.Cryle.
Structural Insights Into A Side Chain Cross-Linking Biarylitide P450 From Ripp Biosynthesis Acs Catalysis 812 2024.
ISSN: ESSN 2155-5435
DOI: 10.1021/ACSCATAL.3C05417
Page generated: Sat Aug 3 00:47:53 2024
|