Fluorine in PDB 8uo9: Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody

The binding sites of Fluorine atom in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody (pdb code 8uo9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody, PDB code: 8uo9:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody within 5.0Å range: probe atom residue distance (Å) B Occ A:F801 b:67.6 occ:1.00 F16 A:X49801 0.0 67.6 1.0 C15 A:X49801 1.3 65.3 1.0 F17 A:X49801 2.1 68.1 1.0 F18 A:X49801 2.2 61.5 1.0 C14 A:X49801 2.4 59.4 1.0 C13 A:X49801 2.6 56.1 1.0 CB A:ILE663 3.3 49.1 1.0 CD1 A:ILE663 3.4 55.6 1.0 CG1 A:VAL608 3.5 52.4 1.0 CB A:VAL608 3.5 51.4 1.0 O A:GLY659 3.7 55.7 1.0 CG1 A:ILE663 3.7 55.2 1.0 C12 A:X49801 3.7 57.9 1.0 CA A:ILE663 3.8 48.2 1.0 CG2 A:VAL608 3.8 53.0 1.0 CE A:MET301 4.0 57.1 1.0 N A:ILE663 4.1 45.5 1.0 C11 A:X49801 4.2 59.1 1.0 C A:GLY659 4.4 49.4 1.0 CG2 A:ILE663 4.4 47.3 1.0 SD A:MET301 4.5 75.1 1.0 OH A:TYR461 4.5 55.0 1.0 CA A:GLY659 4.6 43.7 1.0 CZ A:TYR461 4.8 48.4 1.0 CA A:VAL608 5.0 52.9 1.0 C A:SER662 5.0 53.9 1.0

Fluorine binding site 2 out of 6 in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody within 5.0Å range: probe atom residue distance (Å) B Occ A:F801 b:68.1 occ:1.00 F17 A:X49801 0.0 68.1 1.0 C15 A:X49801 1.4 65.3 1.0 F16 A:X49801 2.1 67.6 1.0 F18 A:X49801 2.2 61.5 1.0 C14 A:X49801 2.3 59.4 1.0 OH A:TYR461 2.8 55.0 1.0 C13 A:X49801 3.2 56.1 1.0 C11 A:X49801 3.3 59.1 1.0 CZ A:TYR461 3.5 48.4 1.0 C12 A:X49801 3.8 57.9 1.0 CZ3 A:TRP300 3.9 56.0 1.0 CG1 A:VAL608 3.9 52.4 1.0 SD A:MET301 4.0 75.1 1.0 CE2 A:TYR461 4.0 47.2 1.0 C10 A:X49801 4.1 60.0 1.0 CE A:MET301 4.2 57.1 1.0 CE1 A:TYR461 4.2 46.9 1.0 CG2 A:VAL608 4.2 53.0 1.0 CE3 A:TRP300 4.3 55.5 1.0 CB A:VAL608 4.4 51.4 1.0 C19 A:X49801 4.4 63.3 1.0 CH2 A:TRP300 4.8 55.9 1.0 CD1 A:ILE663 4.9 55.6 1.0

Fluorine binding site 3 out of 6 in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody within 5.0Å range: probe atom residue distance (Å) B Occ A:F801 b:61.5 occ:1.00 F18 A:X49801 0.0 61.5 1.0 C15 A:X49801 1.4 65.3 1.0 F16 A:X49801 2.2 67.6 1.0 F17 A:X49801 2.2 68.1 1.0 C14 A:X49801 2.3 59.4 1.0 OH A:TYR461 3.0 55.0 1.0 CE1 A:TYR461 3.1 46.9 1.0 CZ A:TYR461 3.2 48.4 1.0 CG1 A:VAL608 3.4 52.4 1.0 CA A:GLY659 3.4 43.7 1.0 C13 A:X49801 3.6 56.1 1.0 O A:GLY659 3.7 55.7 1.0 C A:GLY659 3.9 49.4 1.0 CD1 A:TYR461 4.1 46.9 1.0 CE2 A:TYR461 4.2 47.2 1.0 CB A:VAL608 4.3 51.4 1.0 C11 A:X49801 4.7 59.1 1.0 N A:GLY659 4.7 46.5 1.0 C12 A:X49801 4.7 57.9 1.0 CG2 A:VAL608 4.8 53.0 1.0 CG A:TYR461 4.9 45.9 1.0 CD2 A:TYR461 4.9 45.2 1.0 N A:ILE663 5.0 45.5 1.0

Fluorine binding site 4 out of 6 in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody within 5.0Å range: probe atom residue distance (Å) B Occ A:F801 b:62.0 occ:1.00 F27 A:X49801 0.0 62.0 1.0 C26 A:X49801 1.4 63.0 1.0 F29 A:X49801 2.1 66.2 1.0 F28 A:X49801 2.2 65.5 1.0 C22 A:X49801 2.3 58.1 1.0 C07 A:X49801 3.0 58.5 1.0 CB A:CYS297 3.3 54.8 1.0 N23 A:X49801 3.3 60.8 1.0 C08 A:X49801 3.4 61.9 1.0 SG A:CYS297 3.7 68.8 1.0 CA A:CYS297 4.0 50.5 1.0 CB A:TRP300 4.1 51.2 1.0 N06 A:X49801 4.1 59.2 1.0 N09 A:X49801 4.1 63.4 1.0 CZ A:PHE277 4.2 49.2 1.0 C24 A:X49801 4.2 57.0 1.0 C10 A:X49801 4.2 60.0 1.0 O A:CYS297 4.3 57.6 1.0 CG A:TRP300 4.3 50.1 1.0 CD1 A:TRP300 4.4 49.9 1.0 CD2 A:LEU176 4.5 47.4 1.0 CE2 A:PHE277 4.5 54.3 1.0 OD2 A:ASP670 4.7 56.1 1.0 C A:CYS297 4.7 53.3 1.0 CE A:MET301 5.0 57.1 1.0

Fluorine binding site 5 out of 6 in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody within 5.0Å range: probe atom residue distance (Å) B Occ A:F801 b:65.5 occ:1.00 F28 A:X49801 0.0 65.5 1.0 C26 A:X49801 1.3 63.0 1.0 F27 A:X49801 2.2 62.0 1.0 F29 A:X49801 2.2 66.2 1.0 C22 A:X49801 2.3 58.1 1.0 N23 A:X49801 2.7 60.8 1.0 OD2 A:ASP670 2.9 56.1 1.0 SG A:CYS297 3.1 68.8 1.0 CB A:CYS297 3.3 54.8 1.0 OD1 A:ASN667 3.4 58.2 1.0 C07 A:X49801 3.6 58.5 1.0 C24 A:X49801 4.0 57.0 1.0 CG A:ASP670 4.0 56.6 1.0 CZ A:PHE277 4.3 49.2 1.0 N06 A:X49801 4.4 59.2 1.0 CB A:TRP666 4.4 45.3 1.0 C08 A:X49801 4.5 61.9 1.0 OD1 A:ASP670 4.6 60.0 1.0 C A:TRP666 4.6 49.2 1.0 CG A:ASN667 4.6 57.7 1.0 CA A:CYS297 4.7 50.5 1.0 O A:TRP666 4.7 51.9 1.0 N A:ASN667 4.7 56.4 1.0 CD1 A:ILE663 4.8 55.6 1.0 C12 A:X49801 4.8 57.9 1.0 CA A:ASN667 4.8 54.6 1.0 N09 A:X49801 4.9 63.4 1.0 CE2 A:PHE277 5.0 54.3 1.0

Fluorine binding site 6 out of 6 in the Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody within 5.0Å range: probe atom residue distance (Å) B Occ A:F801 b:66.2 occ:1.00 F29 A:X49801 0.0 66.2 1.0 C26 A:X49801 1.4 63.0 1.0 F27 A:X49801 2.1 62.0 1.0 F28 A:X49801 2.2 65.5 1.0 C22 A:X49801 2.3 58.1 1.0 C10 A:X49801 2.9 60.0 1.0 C07 A:X49801 2.9 58.5 1.0 C12 A:X49801 3.0 57.9 1.0 N09 A:X49801 3.1 63.4 1.0 C08 A:X49801 3.2 61.9 1.0 N23 A:X49801 3.5 60.8 1.0 C11 A:X49801 3.6 59.1 1.0 CD1 A:ILE663 4.0 55.6 1.0 CE A:MET301 4.0 57.1 1.0 C20 A:X49801 4.1 64.7 1.0 N06 A:X49801 4.1 59.2 1.0 CB A:CYS297 4.2 54.8 1.0 C13 A:X49801 4.3 56.1 1.0 C24 A:X49801 4.4 57.0 1.0 CB A:TRP666 4.4 45.3 1.0 C19 A:X49801 4.5 63.3 1.0 OD1 A:ASN667 4.7 58.2 1.0 CB A:TRP300 4.7 51.2 1.0 CG A:TRP300 4.7 50.1 1.0 OD2 A:ASP670 4.7 56.1 1.0 SG A:CYS297 4.8 68.8 1.0 O21 A:X49801 4.8 62.7 1.0 CG A:TRP666 4.8 46.1 1.0 CE3 A:TRP666 4.8 52.7 1.0 O A:CYS297 4.9 57.6 1.0 CD2 A:TRP666 5.0 48.1 1.0 CD2 A:TRP300 5.0 53.7 1.0

A.Mittal, J.A.Coleman. Structure of Synaptic Vesicle Protein 2A in Complex with A Nanobody To Be Published.