Atomistry » Fluorine » PDB 8v8e-8w8s » 8w28
Atomistry »
  Fluorine »
    PDB 8v8e-8w8s »
      8w28 »

Fluorine in PDB 8w28: Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).

Enzymatic activity of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).

All present enzymatic activity of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).:
2.4.2.30;

Other elements in 8w28:

The structure of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). (pdb code 8w28). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map)., PDB code: 8w28:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 8w28

Go back to Fluorine Binding Sites List in 8w28
Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1201

b:32.4
occ:1.00
 FAB D:XAV1201 0.0 32.4 1.0
CAU D:XAV1201 1.3 25.1 1.0
FAD D:XAV1201 2.1 19.7 1.0
FAC D:XAV1201 2.1 28.2 1.0
CAQ D:XAV1201 2.4 22.9 1.0
CAH D:XAV1201 2.7 24.1 1.0
CAG D:XAV1201 3.6 22.4 1.0
CD1 D:ILE1075 3.7 25.3 1.0
CG1 D:ILE1075 4.0 23.7 1.0
CAF D:XAV1201 4.1 22.7 1.0
CD1 D:TYR1050 4.3 11.9 1.0
CAE D:XAV1201 4.7 18.6 1.0
CB D:TYR1050 4.9 8.7 1.0
CG D:TYR1050 4.9 19.6 1.0
CAP D:XAV1201 4.9 20.0 1.0
CA D:TYR1050 5.0 8.6 1.0
CE1 D:TYR1050 5.0 16.7 1.0

Fluorine binding site 2 out of 6 in 8w28

Go back to Fluorine Binding Sites List in 8w28
Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1201

b:28.2
occ:1.00
 FAC D:XAV1201 0.0 28.2 1.0
CAU D:XAV1201 1.3 25.1 1.0
FAD D:XAV1201 2.1 19.7 1.0
FAB D:XAV1201 2.1 32.4 1.0
CAQ D:XAV1201 2.4 22.9 1.0
CAG D:XAV1201 2.8 22.4 1.0
CAH D:XAV1201 3.6 24.1 1.0
CE2 D:PHE1035 3.7 22.7 1.0
CD2 D:PHE1035 4.0 28.2 1.0
CAE D:XAV1201 4.2 18.6 1.0
OG D:SER1033 4.5 20.4 1.0
CAF D:XAV1201 4.7 22.7 1.0
O D:HIS1048 4.8 30.4 1.0
CZ D:PHE1035 4.9 27.7 1.0
CD D:PRO1034 4.9 28.1 1.0
CAP D:XAV1201 5.0 20.0 1.0

Fluorine binding site 3 out of 6 in 8w28

Go back to Fluorine Binding Sites List in 8w28
Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1201

b:19.7
occ:1.00
 FAD D:XAV1201 0.0 19.7 1.0
CAU D:XAV1201 1.3 25.1 1.0
FAB D:XAV1201 2.1 32.4 1.0
FAC D:XAV1201 2.1 28.2 1.0
CAQ D:XAV1201 2.3 22.9 1.0
CAG D:XAV1201 3.1 22.4 1.0
CAH D:XAV1201 3.3 24.1 1.0
CD D:PRO1034 3.8 28.1 1.0
CE2 D:PHE1035 3.9 22.7 1.0
CG D:PRO1034 4.0 25.1 1.0
CAE D:XAV1201 4.4 18.6 1.0
CA D:GLY1074 4.4 13.6 1.0
CAF D:XAV1201 4.5 22.7 1.0
CD2 D:PHE1035 4.5 28.2 1.0
N D:ILE1075 4.7 23.4 1.0
CG1 D:ILE1075 4.7 23.7 1.0
CZ D:PHE1035 4.8 27.7 1.0
CD1 D:ILE1075 4.8 25.3 1.0
CAP D:XAV1201 4.9 20.0 1.0
OG D:SER1033 4.9 20.4 1.0
C D:GLY1074 5.0 13.4 1.0

Fluorine binding site 4 out of 6 in 8w28

Go back to Fluorine Binding Sites List in 8w28
Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:F1201

b:32.8
occ:1.00
 FAB Q:XAV1201 0.0 32.8 1.0
CAU Q:XAV1201 1.3 25.6 1.0
FAD Q:XAV1201 2.1 22.8 1.0
FAC Q:XAV1201 2.2 24.7 1.0
CAQ Q:XAV1201 2.4 20.1 1.0
CAH Q:XAV1201 2.8 19.4 1.0
CAG Q:XAV1201 3.6 21.4 1.0
CD1 Q:ILE1075 4.1 29.3 1.0
CAF Q:XAV1201 4.1 21.9 1.0
CG1 Q:ILE1075 4.3 25.9 1.0
CD1 Q:TYR1050 4.4 6.8 1.0
CAE Q:XAV1201 4.7 20.2 1.0
CB Q:TYR1050 4.8 6.6 1.0
CG Q:TYR1050 4.9 11.8 1.0
CA Q:TYR1050 4.9 6.6 1.0
CAP Q:XAV1201 4.9 19.5 1.0
CE2 Q:PHE1035 5.0 14.4 1.0

Fluorine binding site 5 out of 6 in 8w28

Go back to Fluorine Binding Sites List in 8w28
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:F1201

b:24.7
occ:1.00
 FAC Q:XAV1201 0.0 24.7 1.0
CAU Q:XAV1201 1.3 25.6 1.0
FAD Q:XAV1201 2.1 22.8 1.0
FAB Q:XAV1201 2.2 32.8 1.0
CAQ Q:XAV1201 2.4 20.1 1.0
CAG Q:XAV1201 2.7 21.4 1.0
CE2 Q:PHE1035 3.5 14.4 1.0
CAH Q:XAV1201 3.6 19.4 1.0
CD2 Q:PHE1035 3.7 14.3 1.0
CAE Q:XAV1201 4.1 20.2 1.0
OG Q:SER1033 4.3 9.0 1.0
CD Q:PRO1034 4.5 17.5 1.0
CAF Q:XAV1201 4.7 21.9 1.0
CG Q:PRO1034 4.8 17.8 1.0
CZ Q:PHE1035 4.8 17.3 1.0
CB Q:SER1033 4.9 3.7 1.0
CAP Q:XAV1201 4.9 19.5 1.0

Fluorine binding site 6 out of 6 in 8w28

Go back to Fluorine Binding Sites List in 8w28
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map).


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Human Tankyrase 2 Sam-Parp Filament Bound to Compound, Xav (Focused Refinement Map). within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:F1201

b:22.8
occ:1.00
 FAD Q:XAV1201 0.0 22.8 1.0
CAU Q:XAV1201 1.3 25.6 1.0
FAB Q:XAV1201 2.1 32.8 1.0
FAC Q:XAV1201 2.1 24.7 1.0
CAQ Q:XAV1201 2.3 20.1 1.0
CAH Q:XAV1201 3.1 19.4 1.0
CAG Q:XAV1201 3.2 21.4 1.0
CD Q:PRO1034 3.9 17.5 1.0
CG Q:PRO1034 4.0 17.8 1.0
CE2 Q:PHE1035 4.2 14.4 1.0
CAF Q:XAV1201 4.4 21.9 1.0
CG1 Q:ILE1075 4.4 25.9 1.0
CAE Q:XAV1201 4.4 20.2 1.0
CA Q:GLY1074 4.5 14.5 1.0
N Q:ILE1075 4.6 30.0 1.0
CD1 Q:ILE1075 4.7 29.3 1.0
CD2 Q:PHE1035 4.7 14.3 1.0
CAP Q:XAV1201 4.9 19.5 1.0
C Q:GLY1074 4.9 19.7 1.0

Reference:

J.Zimmerman, B.F.Malone, E.Finkin-Groner, S.Sun, R.Liang, M.Foronda, E.M.Schatoff, E.Granowsky, S.Goswami, A.Katti, B.Leach, H.Alcorn, T.Tammela, Y.Fukase, T.Khan, D.J.Huggins, J.Ginn, N.Liverton, R.K.Hite, L.E.Dow. A Potent and Selective TNKS2 Inhibitor For Tumor-Selective Wnt Suppression. Biorxiv 2025.
ISSN: ISSN 2692-8205
PubMed: 40093088
DOI: 10.1101/2025.03.04.641305
Page generated: Wed Jul 16 09:50:12 2025

Last articles

Fe in 1H29
Fe in 1H5F
Fe in 1H5E
Fe in 1H5D
Fe in 1H5C
Fe in 1H5A
Fe in 1H57
Fe in 1H55
Fe in 1H58
Fe in 1H2R
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy