Fluorine in PDB 8y9y: Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)

All present enzymatic activity of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C):
7.4.2.8;

The structure of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) (pdb code 8y9y). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C), PDB code: 8y9y:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:12.3 occ:1.00 F1 A:BEF1002 0.0 12.3 1.0 O2B A:ADP1003 1.7 19.3 1.0 BE A:BEF1002 1.8 12.3 1.0 O1B A:ADP1003 2.3 19.3 1.0 PB A:ADP1003 2.5 19.3 1.0 MG A:MG1001 2.8 12.3 1.0 F3 A:BEF1002 3.0 12.3 1.0 F2 A:BEF1002 3.0 12.3 1.0 O3A A:ADP1003 3.1 19.3 1.0 NH2 A:ARG528 3.6 15.0 1.0 O2A A:ADP1003 3.8 19.3 1.0 O3B A:ADP1003 3.9 19.3 1.0 CE A:LYS106 4.0 11.3 1.0 PA A:ADP1003 4.1 19.3 1.0 OE2 A:GLU208 4.3 17.2 1.0 NZ A:LYS106 4.3 11.3 1.0 NH1 A:ARG525 4.4 6.8 1.0 N A:GLY103 4.4 15.3 1.0 CZ A:ARG528 4.6 15.0 1.0 NH1 A:ARG528 4.8 15.0 1.0 CB A:LYS106 4.9 11.3 1.0 O A:GLY490 4.9 5.1 1.0

Fluorine binding site 2 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:12.3 occ:1.00 F2 A:BEF1002 0.0 12.3 1.0 BE A:BEF1002 1.8 12.3 1.0 MG A:MG1001 1.9 12.3 1.0 O2B A:ADP1003 2.6 19.3 1.0 F3 A:BEF1002 3.0 12.3 1.0 F1 A:BEF1002 3.0 12.3 1.0 OE2 A:GLU208 3.5 17.2 1.0 PB A:ADP1003 3.9 19.3 1.0 OD1 A:ASP207 4.0 31.8 1.0 CG A:ASP207 4.1 31.8 1.0 CB A:LYS106 4.1 11.3 1.0 OG1 A:THR107 4.3 10.0 1.0 OD2 A:ASP207 4.3 31.8 1.0 O A:LYS106 4.3 11.3 1.0 CD A:GLU208 4.4 17.2 1.0 O3B A:ADP1003 4.4 19.3 1.0 CE A:LYS106 4.5 11.3 1.0 O1B A:ADP1003 4.5 19.3 1.0 C A:LYS106 4.6 11.3 1.0 O2A A:ADP1003 4.7 19.3 1.0 CB A:ASP207 4.7 31.8 1.0 NZ A:LYS106 4.8 11.3 1.0 CA A:LYS106 4.9 11.3 1.0 O3A A:ADP1003 4.9 19.3 1.0 CG A:GLU208 5.0 17.2 1.0

Fluorine binding site 3 out of 3 in the Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Seca-Secy Complex with the Substrate Ftsq-Lacy(+1C) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:12.3 occ:1.00 F3 A:BEF1002 0.0 12.3 1.0 BE A:BEF1002 1.8 12.3 1.0 MG A:MG1001 2.0 12.3 1.0 O2A A:ADP1003 2.6 19.3 1.0 O2B A:ADP1003 2.7 19.3 1.0 F2 A:BEF1002 3.0 12.3 1.0 NH2 A:ARG136 3.0 8.7 1.0 F1 A:BEF1002 3.0 12.3 1.0 O A:GLY490 3.2 5.1 1.0 PA A:ADP1003 3.9 19.3 1.0 PB A:ADP1003 4.1 19.3 1.0 C A:GLY490 4.1 5.1 1.0 O3A A:ADP1003 4.1 19.3 1.0 CZ A:ARG136 4.1 8.7 1.0 OG1 A:THR107 4.1 10.0 1.0 CA A:GLY490 4.3 5.1 1.0 NH1 A:ARG136 4.6 8.7 1.0 O1A A:ADP1003 4.7 19.3 1.0 OE2 A:GLU208 4.9 17.2 1.0 O1B A:ADP1003 4.9 19.3 1.0 CD2 A:LEU133 4.9 5.0 1.0

X.Ou, C.Ma, D.Sun, J.Xu, Y.Wang, X.Wu, D.Wang, S.Yang, N.Gao, C.Song, L.Li. Secy Translocon Chaperones Protein Folding During Membrane Protein Insertion Cell 2025.