Fluorine in PDB 8zlo: F0502B-Bound E46K Alpha-Synuclein Fibril

Other elements in 8zlo:

The structure of F0502B-Bound E46K Alpha-Synuclein Fibril also contains other interesting chemical elements:

Bromine (Br) 10 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the F0502B-Bound E46K Alpha-Synuclein Fibril (pdb code 8zlo). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 10 binding sites of Fluorine where determined in the F0502B-Bound E46K Alpha-Synuclein Fibril, PDB code: 8zlo:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 1 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F101

b:105.5
occ:1.00
 F10 E:1KI101 0.0 105.5 1.0
C09 E:1KI101 1.4 105.5 1.0
C08 E:1KI101 2.4 105.5 1.0
O E:LYS97 2.5 153.8 1.0
CG E:GLN99 2.8 184.4 1.0
NE2 E:GLN99 3.1 184.4 1.0
CD E:GLN99 3.2 184.4 1.0
O07 E:1KI101 3.2 105.5 1.0
CB E:GLN99 3.7 184.4 1.0
C E:LYS97 3.7 153.8 1.0
CB E:LYS97 4.2 153.8 1.0
N E:GLN99 4.2 184.4 1.0
O J:ASP98 4.2 175.0 1.0
OE1 E:GLN99 4.2 184.4 1.0
C09 J:1KI101 4.3 105.5 1.0
C E:ASP98 4.3 175.0 1.0
F10 I:1KI103 4.4 105.5 1.0
C06 E:1KI101 4.4 105.5 1.0
CA E:GLN99 4.5 184.4 1.0
O J:LYS97 4.5 153.8 1.0
CB J:LYS97 4.6 153.8 1.0
CG J:GLN99 4.6 184.4 1.0
CA E:LYS97 4.6 153.8 1.0
C J:LYS97 4.6 153.8 1.0
CA J:LYS97 4.7 153.8 1.0
N E:ASP98 4.7 175.0 1.0
O E:ASP98 4.7 175.0 1.0
CA E:ASP98 4.7 175.0 1.0
C08 J:1KI101 4.7 105.5 1.0
NE2 J:GLN99 5.0 184.4 1.0

Fluorine binding site 2 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 2 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F101

b:105.5
occ:1.00
 F10 F:1KI101 0.0 105.5 1.0
C09 F:1KI101 1.4 105.5 1.0
C08 F:1KI101 2.4 105.5 1.0
O F:LYS97 2.5 153.8 1.0
CG F:GLN99 2.8 184.4 1.0
NE2 F:GLN99 3.1 184.4 1.0
CD F:GLN99 3.2 184.4 1.0
O07 F:1KI101 3.2 105.5 1.0
CB F:GLN99 3.7 184.4 1.0
C F:LYS97 3.7 153.8 1.0
CB F:LYS97 4.2 153.8 1.0
N F:GLN99 4.2 184.4 1.0
O H:ASP98 4.2 175.0 1.0
OE1 F:GLN99 4.2 184.4 1.0
C09 H:1KI101 4.3 105.5 1.0
C F:ASP98 4.3 175.0 1.0
F10 G:1KI103 4.4 105.5 1.0
C06 F:1KI101 4.4 105.5 1.0
CA F:GLN99 4.5 184.4 1.0
O H:LYS97 4.5 153.8 1.0
CB H:LYS97 4.6 153.8 1.0
CG H:GLN99 4.6 184.4 1.0
CA F:LYS97 4.6 153.8 1.0
C H:LYS97 4.6 153.8 1.0
CA H:LYS97 4.7 153.8 1.0
N F:ASP98 4.7 175.0 1.0
O F:ASP98 4.7 175.0 1.0
CA F:ASP98 4.7 175.0 1.0
C08 H:1KI101 4.7 105.5 1.0
NE2 H:GLN99 5.0 184.4 1.0

Fluorine binding site 3 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 3 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F101

b:61.8
occ:1.00
 F10 G:1KI101 0.0 61.8 1.0
C09 G:1KI101 1.4 61.8 1.0
C08 G:1KI101 2.4 61.8 1.0
O07 G:1KI101 2.5 61.8 1.0
O D:GLY86 3.2 161.9 1.0
CD1 D:ILE88 3.7 146.1 1.0
C06 G:1KI101 3.9 61.8 1.0
C D:GLY86 4.0 161.9 1.0
NZ D:LYS96 4.2 140.8 1.0
O C:GLY86 4.4 161.9 1.0
CD1 C:ILE88 4.4 146.1 1.0
CA D:GLY86 4.5 161.9 1.0
C05 G:1KI101 4.7 61.8 1.0
CG1 D:ILE88 4.8 146.1 1.0
N D:SER87 5.0 154.3 1.0

Fluorine binding site 4 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 4 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F102

b:97.6
occ:1.00
 F10 G:1KI102 0.0 97.6 1.0
C09 G:1KI102 1.4 97.6 1.0
C08 G:1KI102 2.4 97.6 1.0
CA C:GLY47 3.3 202.0 1.0
N C:GLY47 3.4 202.0 1.0
O07 G:1KI102 3.4 97.6 1.0
C C:LYS46 3.9 203.1 1.0
O D:LYS46 4.0 203.1 1.0
C C:GLY47 4.1 202.0 1.0
O C:GLY47 4.2 202.0 1.0
O C:LYS46 4.3 203.1 1.0
CG1 D:VAL55 4.3 156.3 1.0
C06 G:1KI102 4.6 97.6 1.0
CD C:LYS45 4.7 201.4 1.0
CA C:LYS46 4.7 203.1 1.0
CA D:GLY47 4.7 202.0 1.0
CG C:LYS45 4.8 201.4 1.0
C D:LYS46 5.0 203.1 1.0

Fluorine binding site 5 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 5 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F103

b:105.5
occ:1.00
 F10 G:1KI103 0.0 105.5 1.0
C09 G:1KI103 1.4 105.5 1.0
C08 G:1KI103 2.4 105.5 1.0
O G:LYS97 3.0 153.8 1.0
NE2 G:GLN99 3.2 184.4 1.0
CG G:GLN99 3.2 184.4 1.0
O07 G:1KI103 3.2 105.5 1.0
C09 F:1KI101 3.4 105.5 1.0
CD G:GLN99 3.4 184.4 1.0
C08 F:1KI101 3.9 105.5 1.0
CB G:GLN99 4.1 184.4 1.0
C G:LYS97 4.2 153.8 1.0
O F:LYS97 4.2 153.8 1.0
CG F:GLN99 4.3 184.4 1.0
O F:ASP98 4.3 175.0 1.0
CB F:LYS97 4.3 153.8 1.0
OE1 G:GLN99 4.3 184.4 1.0
F10 F:1KI101 4.4 105.5 1.0
C06 G:1KI103 4.4 105.5 1.0
CB G:LYS97 4.4 153.8 1.0
C F:LYS97 4.5 153.8 1.0
NE2 F:GLN99 4.5 184.4 1.0
CA F:LYS97 4.6 153.8 1.0
N G:GLN99 4.7 184.4 1.0
C06 F:1KI101 4.7 105.5 1.0
O07 F:1KI101 4.8 105.5 1.0
C G:ASP98 4.9 175.0 1.0
CD F:GLN99 4.9 184.4 1.0
CA G:GLN99 5.0 184.4 1.0

Fluorine binding site 6 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 6 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
H:F101

b:105.5
occ:1.00
 F10 H:1KI101 0.0 105.5 1.0
C09 H:1KI101 1.4 105.5 1.0
C08 H:1KI101 2.4 105.5 1.0
O H:LYS97 2.5 153.8 1.0
CG H:GLN99 3.1 184.4 1.0
O07 H:1KI101 3.2 105.5 1.0
NE2 H:GLN99 3.4 184.4 1.0
CD H:GLN99 3.5 184.4 1.0
C H:LYS97 3.8 153.8 1.0
CB H:GLN99 3.9 184.4 1.0
CB O:LYS97 4.1 153.8 1.0
O O:LYS97 4.1 153.8 1.0
CB H:LYS97 4.2 153.8 1.0
N H:GLN99 4.3 184.4 1.0
O O:ASP98 4.3 175.0 1.0
CA O:LYS97 4.3 153.8 1.0
C O:LYS97 4.3 153.8 1.0
C06 H:1KI101 4.4 105.5 1.0
OE1 H:GLN99 4.4 184.4 1.0
C H:ASP98 4.4 175.0 1.0
CG O:GLN99 4.5 184.4 1.0
CA H:LYS97 4.6 153.8 1.0
CA H:GLN99 4.7 184.4 1.0
N H:ASP98 4.7 175.0 1.0
CA H:ASP98 4.7 175.0 1.0
CD O:LYS97 4.8 153.8 1.0
NE2 O:GLN99 4.8 184.4 1.0
O H:ASP98 4.9 175.0 1.0

Fluorine binding site 7 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 7 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F101

b:61.8
occ:1.00
 F10 I:1KI101 0.0 61.8 1.0
C09 I:1KI101 1.4 61.8 1.0
C08 I:1KI101 2.4 61.8 1.0
O07 I:1KI101 2.4 61.8 1.0
NZ B:LYS96 2.9 140.8 1.0
C06 I:1KI101 3.8 61.8 1.0
CE B:LYS96 4.1 140.8 1.0
CD B:LYS96 4.3 140.8 1.0
CD1 B:ILE88 4.3 146.1 1.0
O B:GLY86 4.4 161.9 1.0
C05 I:1KI101 4.7 61.8 1.0

Fluorine binding site 8 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 8 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F102

b:97.6
occ:1.00
 F10 I:1KI102 0.0 97.6 1.0
C09 I:1KI102 1.4 97.6 1.0
C08 I:1KI102 2.4 97.6 1.0
CA A:GLY47 3.3 202.0 1.0
N A:GLY47 3.4 202.0 1.0
O07 I:1KI102 3.4 97.6 1.0
C A:LYS46 3.9 203.1 1.0
O B:LYS46 4.0 203.1 1.0
C A:GLY47 4.1 202.0 1.0
O A:GLY47 4.2 202.0 1.0
O A:LYS46 4.3 203.1 1.0
CG1 B:VAL55 4.3 156.3 1.0
C06 I:1KI102 4.6 97.6 1.0
CD A:LYS45 4.7 201.4 1.0
CA A:LYS46 4.7 203.1 1.0
CA B:GLY47 4.7 202.0 1.0
CG A:LYS45 4.8 201.4 1.0
C B:LYS46 5.0 203.1 1.0

Fluorine binding site 9 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 9 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
I:F103

b:105.5
occ:1.00
 F10 I:1KI103 0.0 105.5 1.0
C09 I:1KI103 1.4 105.5 1.0
C08 I:1KI103 2.4 105.5 1.0
O I:LYS97 3.0 153.8 1.0
NE2 I:GLN99 3.2 184.4 1.0
CG I:GLN99 3.2 184.4 1.0
O07 I:1KI103 3.2 105.5 1.0
C09 E:1KI101 3.4 105.5 1.0
CD I:GLN99 3.4 184.4 1.0
C08 E:1KI101 3.9 105.5 1.0
CB I:GLN99 4.1 184.4 1.0
C I:LYS97 4.2 153.8 1.0
O E:LYS97 4.2 153.8 1.0
CG E:GLN99 4.3 184.4 1.0
O E:ASP98 4.3 175.0 1.0
CB E:LYS97 4.3 153.8 1.0
OE1 I:GLN99 4.3 184.4 1.0
F10 E:1KI101 4.4 105.5 1.0
C06 I:1KI103 4.4 105.5 1.0
CB I:LYS97 4.4 153.8 1.0
C E:LYS97 4.5 153.8 1.0
NE2 E:GLN99 4.5 184.4 1.0
CA E:LYS97 4.6 153.8 1.0
N I:GLN99 4.7 184.4 1.0
C06 E:1KI101 4.7 105.5 1.0
O07 E:1KI101 4.8 105.5 1.0
C I:ASP98 4.9 175.0 1.0
CD E:GLN99 4.9 184.4 1.0
CA I:GLN99 5.0 184.4 1.0

Fluorine binding site 10 out of 10 in 8zlo

Go back to Fluorine Binding Sites List in 8zlo
Fluorine binding site 10 out of 10 in the F0502B-Bound E46K Alpha-Synuclein Fibril


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of F0502B-Bound E46K Alpha-Synuclein Fibril within 5.0Å range:
probe atom residue distance (Å) B Occ
J:F101

b:105.5
occ:1.00
 F10 J:1KI101 0.0 105.5 1.0
C09 J:1KI101 1.4 105.5 1.0
C08 J:1KI101 2.4 105.5 1.0
O J:LYS97 2.5 153.8 1.0
CG J:GLN99 3.1 184.4 1.0
O07 J:1KI101 3.2 105.5 1.0
NE2 J:GLN99 3.4 184.4 1.0
CD J:GLN99 3.5 184.4 1.0
C J:LYS97 3.8 153.8 1.0
CB J:GLN99 3.9 184.4 1.0
CB T:LYS97 4.1 153.8 1.0
O T:LYS97 4.1 153.8 1.0
CB J:LYS97 4.2 153.8 1.0
N J:GLN99 4.3 184.4 1.0
O T:ASP98 4.3 175.0 1.0
CA T:LYS97 4.3 153.8 1.0
C T:LYS97 4.3 153.8 1.0
C06 J:1KI101 4.4 105.5 1.0
OE1 J:GLN99 4.4 184.4 1.0
C J:ASP98 4.4 175.0 1.0
CG T:GLN99 4.5 184.4 1.0
CA J:LYS97 4.6 153.8 1.0
CA J:GLN99 4.7 184.4 1.0
N J:ASP98 4.7 175.0 1.0
CA J:ASP98 4.7 175.0 1.0
CD T:LYS97 4.7 153.8 1.0
NE2 T:GLN99 4.8 184.4 1.0
O J:ASP98 4.9 175.0 1.0

Reference:

K.Liu, Y.Tao, Q.Zhao, W.Xia, X.Li, S.Zhang, Y.Yao, H.Xiang, C.Han, L.Tan, B.Sun, D.Li, A.Li, C.Liu. Binding Adaptability of Chemical Ligands to Polymorphic Alpha-Synuclein Amyloid Fibrils. Proc.Natl.Acad.Sci.Usa V. 121 33121 2024.
ISSN: ESSN 1091-6490
PubMed: 39172784
DOI: 10.1073/PNAS.2321633121
Page generated: Sat Sep 28 20:42:02 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy