Fluorine in PDB 9bw8: Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Protein crystallography data
The structure of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide, PDB code: 9bw8
was solved by
M.H.Hansen,
M.J.Cryle,
Y.Zhao,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.73 /
1.86
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.915,
94.152,
105.003,
90,
91.77,
90
|
R / Rfree (%)
|
17.9 /
20.7
|
Other elements in 9bw8:
The structure of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Fluorine atom in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
(pdb code 9bw8). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the
Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide, PDB code: 9bw8:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 1 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F3
b:56.5
occ:0.89
|
F
|
E:YOF3
|
0.0
|
56.5
|
0.9
|
CE1
|
E:YOF3
|
1.4
|
61.9
|
0.9
|
HH
|
E:YOF3
|
2.3
|
65.9
|
0.9
|
HE1
|
E:HIS5
|
2.3
|
85.2
|
0.9
|
CZ
|
E:YOF3
|
2.4
|
53.1
|
0.9
|
CD1
|
E:YOF3
|
2.4
|
55.1
|
0.9
|
HD21
|
C:LEU382
|
2.5
|
52.9
|
1.0
|
HD11
|
C:LEU382
|
2.5
|
48.5
|
1.0
|
HD13
|
C:LEU382
|
2.6
|
48.5
|
1.0
|
HD1
|
E:YOF3
|
2.7
|
66.2
|
0.9
|
OH
|
E:YOF3
|
2.7
|
54.9
|
0.9
|
CD1
|
C:LEU382
|
2.9
|
40.4
|
1.0
|
HG
|
C:LEU382
|
3.1
|
52.4
|
1.0
|
CE1
|
E:HIS5
|
3.2
|
70.9
|
0.9
|
CG
|
C:LEU382
|
3.2
|
43.6
|
1.0
|
CD2
|
C:LEU382
|
3.2
|
44.0
|
1.0
|
HE1
|
C:MET172
|
3.3
|
59.0
|
1.0
|
NE2
|
E:HIS5
|
3.6
|
66.2
|
0.9
|
CG
|
E:YOF3
|
3.7
|
60.9
|
0.9
|
CE2
|
E:YOF3
|
3.7
|
52.4
|
0.9
|
OG
|
C:SER239
|
3.7
|
44.7
|
1.0
|
HD23
|
C:LEU382
|
3.8
|
52.9
|
1.0
|
HG22
|
C:VAL281
|
3.8
|
42.1
|
1.0
|
HD12
|
C:LEU382
|
3.8
|
48.5
|
1.0
|
HG
|
C:SER239
|
3.9
|
53.7
|
1.0
|
HD22
|
C:LEU382
|
3.9
|
52.9
|
1.0
|
HA
|
C:ALA235
|
4.0
|
54.4
|
1.0
|
CE
|
C:MET172
|
4.0
|
49.1
|
1.0
|
HE2
|
C:MET172
|
4.0
|
59.0
|
1.0
|
CD2
|
E:YOF3
|
4.1
|
54.5
|
0.9
|
HB2
|
C:GLU238
|
4.4
|
47.0
|
1.0
|
ND1
|
E:HIS5
|
4.4
|
86.3
|
0.9
|
HE2
|
E:YOF3
|
4.5
|
62.9
|
0.9
|
SD
|
C:MET172
|
4.6
|
39.7
|
1.0
|
CG2
|
C:VAL281
|
4.6
|
35.0
|
1.0
|
HA
|
E:YOF3
|
4.6
|
78.1
|
0.9
|
HG21
|
C:VAL281
|
4.6
|
42.1
|
1.0
|
CB
|
C:LEU382
|
4.7
|
35.3
|
1.0
|
O
|
E:HOH101
|
4.7
|
40.8
|
1.0
|
HB2
|
C:ALA235
|
4.7
|
52.8
|
1.0
|
HB3
|
C:GLU238
|
4.8
|
47.0
|
1.0
|
HD1
|
E:HIS5
|
4.8
|
103.6
|
0.9
|
HE3
|
C:MET172
|
4.8
|
59.0
|
1.0
|
CA
|
C:ALA235
|
4.9
|
45.3
|
1.0
|
HG23
|
C:VAL281
|
4.9
|
42.1
|
1.0
|
CB
|
E:YOF3
|
4.9
|
57.7
|
0.9
|
H
|
C:SER239
|
4.9
|
41.7
|
1.0
|
CD2
|
E:HIS5
|
4.9
|
63.7
|
0.9
|
HA
|
C:SER239
|
5.0
|
44.2
|
1.0
|
HB2
|
C:LEU382
|
5.0
|
42.4
|
1.0
|
HB3
|
C:LEU382
|
5.0
|
42.4
|
1.0
|
CB
|
C:SER239
|
5.0
|
36.8
|
1.0
|
|
Fluorine binding site 2 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 2 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:55.4
occ:0.77
|
F1
|
A:TFA401
|
0.0
|
55.4
|
0.8
|
C2
|
A:TFA401
|
1.3
|
42.3
|
0.8
|
F2
|
A:TFA401
|
2.2
|
50.4
|
0.8
|
F3
|
A:TFA401
|
2.2
|
62.9
|
0.8
|
C1
|
A:TFA401
|
2.3
|
48.8
|
0.8
|
OXT
|
A:TFA401
|
2.9
|
39.3
|
0.8
|
CG
|
A:HIS254
|
3.0
|
44.1
|
1.0
|
HD11
|
A:LEU257
|
3.1
|
38.2
|
1.0
|
O
|
A:TFA401
|
3.1
|
58.5
|
0.8
|
HB3
|
A:HIS254
|
3.2
|
50.0
|
1.0
|
CD2
|
A:HIS254
|
3.2
|
43.4
|
1.0
|
ND1
|
A:HIS254
|
3.4
|
44.5
|
1.0
|
HB2
|
A:HIS254
|
3.4
|
50.0
|
1.0
|
CB
|
A:HIS254
|
3.4
|
41.6
|
1.0
|
HD2
|
A:HIS254
|
3.6
|
52.2
|
1.0
|
NE2
|
A:HIS254
|
3.7
|
48.7
|
1.0
|
CE1
|
A:HIS254
|
3.7
|
48.8
|
1.0
|
HD21
|
A:LEU257
|
3.8
|
45.0
|
1.0
|
HH11
|
A:ARG250
|
3.8
|
40.5
|
1.0
|
CD1
|
A:LEU257
|
3.9
|
31.8
|
1.0
|
HG
|
A:LEU257
|
4.0
|
42.6
|
1.0
|
HD3
|
A:ARG250
|
4.0
|
39.7
|
1.0
|
HG3
|
A:ARG250
|
4.2
|
36.1
|
1.0
|
HD12
|
A:LEU257
|
4.2
|
38.2
|
1.0
|
HE2
|
A:HIS254
|
4.2
|
58.5
|
1.0
|
HG2
|
A:ARG250
|
4.2
|
36.1
|
1.0
|
HG23
|
A:VAL325
|
4.3
|
36.0
|
1.0
|
HE1
|
A:HIS254
|
4.3
|
58.6
|
1.0
|
CG
|
A:LEU257
|
4.4
|
35.5
|
1.0
|
HG21
|
A:VAL325
|
4.4
|
36.0
|
1.0
|
HB
|
A:VAL325
|
4.5
|
39.3
|
1.0
|
O
|
A:HOH528
|
4.5
|
29.4
|
1.0
|
CD2
|
A:LEU257
|
4.5
|
37.4
|
1.0
|
CG
|
A:ARG250
|
4.6
|
30.0
|
1.0
|
H
|
A:VAL325
|
4.6
|
34.0
|
1.0
|
NH1
|
A:ARG250
|
4.6
|
33.7
|
1.0
|
HD13
|
A:LEU257
|
4.6
|
38.2
|
1.0
|
OE2
|
A:GLU256
|
4.6
|
51.2
|
1.0
|
CG2
|
A:VAL325
|
4.7
|
30.0
|
1.0
|
CD
|
A:ARG250
|
4.8
|
33.0
|
1.0
|
CA
|
A:HIS254
|
4.9
|
37.3
|
1.0
|
HH12
|
A:ARG250
|
4.9
|
40.5
|
1.0
|
HD23
|
A:LEU257
|
5.0
|
45.0
|
1.0
|
|
Fluorine binding site 3 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 3 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:50.4
occ:0.77
|
F2
|
A:TFA401
|
0.0
|
50.4
|
0.8
|
C2
|
A:TFA401
|
1.3
|
42.3
|
0.8
|
HH11
|
A:ARG250
|
2.1
|
40.5
|
1.0
|
F1
|
A:TFA401
|
2.2
|
55.4
|
0.8
|
F3
|
A:TFA401
|
2.2
|
62.9
|
0.8
|
HD3
|
A:ARG250
|
2.3
|
39.7
|
1.0
|
C1
|
A:TFA401
|
2.3
|
48.8
|
0.8
|
HG23
|
A:VAL325
|
2.5
|
36.0
|
1.0
|
OXT
|
A:TFA401
|
2.7
|
39.3
|
0.8
|
NH1
|
A:ARG250
|
2.9
|
33.7
|
1.0
|
HG21
|
A:VAL325
|
3.0
|
36.0
|
1.0
|
HD11
|
A:LEU257
|
3.0
|
38.2
|
1.0
|
CG2
|
A:VAL325
|
3.1
|
30.0
|
1.0
|
CD
|
A:ARG250
|
3.2
|
33.0
|
1.0
|
O
|
A:TFA401
|
3.3
|
58.5
|
0.8
|
HH12
|
A:ARG250
|
3.4
|
40.5
|
1.0
|
HG3
|
A:ARG250
|
3.4
|
36.1
|
1.0
|
H
|
A:VAL325
|
3.4
|
34.0
|
1.0
|
CG
|
A:ARG250
|
3.7
|
30.0
|
1.0
|
HG2
|
A:ARG250
|
3.7
|
36.1
|
1.0
|
HB
|
A:VAL325
|
3.7
|
39.3
|
1.0
|
HD21
|
A:LEU257
|
3.8
|
45.0
|
1.0
|
HD2
|
A:ARG250
|
3.8
|
39.7
|
1.0
|
CZ
|
A:ARG250
|
3.8
|
31.2
|
1.0
|
HG22
|
A:VAL325
|
3.9
|
36.0
|
1.0
|
NE
|
A:ARG250
|
3.9
|
30.5
|
1.0
|
CD1
|
A:LEU257
|
4.0
|
31.8
|
1.0
|
CB
|
A:VAL325
|
4.0
|
32.7
|
1.0
|
HD13
|
A:LEU277
|
4.0
|
35.4
|
1.0
|
N
|
A:VAL325
|
4.2
|
28.2
|
1.0
|
HD13
|
A:LEU257
|
4.2
|
38.2
|
1.0
|
HA
|
A:ALA324
|
4.4
|
42.2
|
1.0
|
HD12
|
A:LEU257
|
4.4
|
38.2
|
1.0
|
ND1
|
A:HIS254
|
4.5
|
44.5
|
1.0
|
HB2
|
A:HIS254
|
4.6
|
50.0
|
1.0
|
CD2
|
A:LEU257
|
4.7
|
37.4
|
1.0
|
CG
|
A:HIS254
|
4.7
|
44.1
|
1.0
|
CA
|
A:VAL325
|
4.7
|
30.3
|
1.0
|
HE
|
A:ARG250
|
4.7
|
36.7
|
1.0
|
CD1
|
A:LEU277
|
4.8
|
29.4
|
1.0
|
CG
|
A:LEU257
|
4.8
|
35.5
|
1.0
|
HD12
|
A:LEU277
|
4.8
|
35.4
|
1.0
|
O
|
A:HOH528
|
4.9
|
29.4
|
1.0
|
HD11
|
A:LEU277
|
4.9
|
35.4
|
1.0
|
HG
|
A:LEU257
|
4.9
|
42.6
|
1.0
|
CE1
|
A:HIS254
|
4.9
|
48.8
|
1.0
|
O
|
A:ASP323
|
4.9
|
33.0
|
1.0
|
HB3
|
A:HIS254
|
4.9
|
50.0
|
1.0
|
CB
|
A:HIS254
|
5.0
|
41.6
|
1.0
|
|
Fluorine binding site 4 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 4 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F401
b:62.9
occ:0.77
|
F3
|
A:TFA401
|
0.0
|
62.9
|
0.8
|
C2
|
A:TFA401
|
1.3
|
42.3
|
0.8
|
F2
|
A:TFA401
|
2.2
|
50.4
|
0.8
|
F1
|
A:TFA401
|
2.2
|
55.4
|
0.8
|
C1
|
A:TFA401
|
2.3
|
48.8
|
0.8
|
HH11
|
A:ARG250
|
2.4
|
40.5
|
1.0
|
O
|
A:TFA401
|
2.4
|
58.5
|
0.8
|
NH1
|
A:ARG250
|
3.0
|
33.7
|
1.0
|
CE1
|
A:HIS254
|
3.1
|
48.8
|
1.0
|
HH12
|
A:ARG250
|
3.1
|
40.5
|
1.0
|
ND1
|
A:HIS254
|
3.2
|
44.5
|
1.0
|
HE1
|
A:HIS254
|
3.2
|
58.6
|
1.0
|
OXT
|
A:TFA401
|
3.4
|
39.3
|
0.8
|
HG3
|
A:ARG250
|
3.4
|
36.1
|
1.0
|
NE2
|
A:HIS254
|
3.5
|
48.7
|
1.0
|
HD3
|
A:ARG250
|
3.7
|
39.7
|
1.0
|
CG
|
A:HIS254
|
3.7
|
44.1
|
1.0
|
O
|
A:HOH628
|
3.9
|
52.2
|
1.0
|
CD2
|
A:HIS254
|
3.9
|
43.4
|
1.0
|
HE2
|
A:HIS254
|
3.9
|
58.5
|
1.0
|
CG
|
A:ARG250
|
4.1
|
30.0
|
1.0
|
CZ
|
A:ARG250
|
4.2
|
31.2
|
1.0
|
HG2
|
A:ARG250
|
4.3
|
36.1
|
1.0
|
CD
|
A:ARG250
|
4.3
|
33.0
|
1.0
|
HD11
|
A:LEU257
|
4.4
|
38.2
|
1.0
|
HB2
|
A:HIS254
|
4.5
|
50.0
|
1.0
|
HG23
|
A:VAL325
|
4.5
|
36.0
|
1.0
|
HD2
|
A:HIS254
|
4.5
|
52.2
|
1.0
|
O
|
A:HOH578
|
4.6
|
41.3
|
1.0
|
CB
|
A:HIS254
|
4.6
|
41.6
|
1.0
|
NE
|
A:ARG250
|
4.7
|
30.5
|
1.0
|
HB3
|
A:HIS254
|
4.8
|
50.0
|
1.0
|
H
|
A:VAL325
|
4.8
|
34.0
|
1.0
|
HA
|
A:ALA324
|
4.8
|
42.2
|
1.0
|
O
|
A:ASP323
|
4.9
|
33.0
|
1.0
|
|
Fluorine binding site 5 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 5 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:71.7
occ:1.00
|
F1
|
A:TFA402
|
0.0
|
71.7
|
1.0
|
C2
|
A:TFA402
|
1.4
|
70.7
|
1.0
|
F3
|
A:TFA402
|
2.3
|
75.8
|
1.0
|
F2
|
A:TFA402
|
2.3
|
80.7
|
1.0
|
C1
|
A:TFA402
|
2.3
|
75.5
|
1.0
|
HA
|
A:ALA231
|
2.5
|
48.2
|
1.0
|
O
|
A:TFA402
|
2.8
|
75.2
|
1.0
|
HE22
|
A:GLN84
|
3.1
|
59.9
|
1.0
|
HG2
|
A:ARG230
|
3.1
|
57.6
|
1.0
|
HB2
|
A:ALA231
|
3.1
|
45.9
|
1.0
|
HE
|
A:ARG230
|
3.1
|
65.6
|
1.0
|
CA
|
A:ALA231
|
3.2
|
40.1
|
1.0
|
N
|
A:ALA231
|
3.4
|
35.5
|
1.0
|
OXT
|
A:TFA402
|
3.4
|
85.2
|
1.0
|
HB3
|
A:ARG230
|
3.5
|
49.7
|
1.0
|
CB
|
A:ALA231
|
3.6
|
38.2
|
1.0
|
H
|
A:ALA231
|
3.6
|
42.6
|
1.0
|
C
|
A:ARG230
|
3.7
|
39.4
|
1.0
|
NE2
|
A:GLN84
|
3.7
|
49.9
|
1.0
|
NE
|
A:ARG230
|
3.7
|
54.6
|
1.0
|
HB3
|
A:HIS234
|
3.7
|
44.3
|
1.0
|
O
|
A:ARG230
|
3.8
|
37.1
|
1.0
|
HE21
|
A:GLN84
|
3.8
|
59.9
|
1.0
|
CG
|
A:ARG230
|
3.9
|
47.9
|
1.0
|
HB1
|
A:ALA231
|
4.0
|
45.9
|
1.0
|
CB
|
A:ARG230
|
4.1
|
41.3
|
1.0
|
HH21
|
A:ARG230
|
4.2
|
73.1
|
1.0
|
CD
|
A:ARG230
|
4.2
|
52.9
|
1.0
|
O
|
A:ASN227
|
4.2
|
39.0
|
1.0
|
HD2
|
A:ARG230
|
4.3
|
63.6
|
1.0
|
HB2
|
A:HIS234
|
4.4
|
44.3
|
1.0
|
HB3
|
A:ALA231
|
4.5
|
45.9
|
1.0
|
CB
|
A:HIS234
|
4.5
|
36.9
|
1.0
|
C
|
A:ALA231
|
4.5
|
35.2
|
1.0
|
CZ
|
A:ARG230
|
4.6
|
60.1
|
1.0
|
CA
|
A:ARG230
|
4.6
|
39.0
|
1.0
|
HG3
|
A:ARG230
|
4.7
|
57.6
|
1.0
|
NH2
|
A:ARG230
|
4.7
|
60.8
|
1.0
|
HE
|
A:ARG188
|
4.7
|
67.5
|
1.0
|
HG
|
A:SER82
|
4.7
|
54.1
|
1.0
|
HG2
|
A:ARG188
|
4.8
|
62.1
|
1.0
|
O
|
A:ALA231
|
4.9
|
33.2
|
1.0
|
CD
|
A:GLN84
|
4.9
|
52.8
|
1.0
|
HB2
|
A:ARG230
|
4.9
|
49.7
|
1.0
|
H
|
A:HIS234
|
5.0
|
41.3
|
1.0
|
|
Fluorine binding site 6 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 6 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:80.7
occ:1.00
|
F2
|
A:TFA402
|
0.0
|
80.7
|
1.0
|
C2
|
A:TFA402
|
1.4
|
70.7
|
1.0
|
F3
|
A:TFA402
|
2.2
|
75.8
|
1.0
|
F1
|
A:TFA402
|
2.3
|
71.7
|
1.0
|
C1
|
A:TFA402
|
2.4
|
75.5
|
1.0
|
OXT
|
A:TFA402
|
2.6
|
85.2
|
1.0
|
HB3
|
A:HIS234
|
3.2
|
44.3
|
1.0
|
HG21
|
A:ILE168
|
3.3
|
44.3
|
1.0
|
ND1
|
A:HIS234
|
3.4
|
35.9
|
1.0
|
O
|
A:TFA402
|
3.5
|
75.2
|
1.0
|
HA
|
A:ALA231
|
3.7
|
48.2
|
1.0
|
CG
|
A:HIS234
|
3.9
|
37.9
|
1.0
|
CB
|
A:HIS234
|
3.9
|
36.9
|
1.0
|
CG2
|
A:ILE168
|
4.0
|
36.9
|
1.0
|
HG22
|
A:ILE168
|
4.1
|
44.3
|
1.0
|
HE
|
A:ARG188
|
4.1
|
67.5
|
1.0
|
HB2
|
A:HIS234
|
4.1
|
44.3
|
1.0
|
HE21
|
A:GLN84
|
4.1
|
59.9
|
1.0
|
HE22
|
A:GLN84
|
4.2
|
59.9
|
1.0
|
CE1
|
A:HIS234
|
4.3
|
36.1
|
1.0
|
HG23
|
A:ILE168
|
4.3
|
44.3
|
1.0
|
HD13
|
A:ILE168
|
4.4
|
49.4
|
1.0
|
NE2
|
A:GLN84
|
4.5
|
49.9
|
1.0
|
HG2
|
A:ARG230
|
4.5
|
57.6
|
1.0
|
HH21
|
A:ARG188
|
4.5
|
74.5
|
1.0
|
HE
|
A:ARG230
|
4.5
|
65.6
|
1.0
|
HE1
|
A:HIS234
|
4.5
|
43.4
|
1.0
|
CA
|
A:ALA231
|
4.6
|
40.1
|
1.0
|
HE2
|
A:MET172
|
4.7
|
47.7
|
1.0
|
HG2
|
A:ARG188
|
4.7
|
62.1
|
1.0
|
HB2
|
A:ALA231
|
4.8
|
45.9
|
1.0
|
NE
|
A:ARG188
|
4.8
|
56.2
|
1.0
|
CD2
|
A:HIS234
|
5.0
|
36.9
|
1.0
|
H
|
A:ALA235
|
5.0
|
43.1
|
1.0
|
|
Fluorine binding site 7 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 7 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F402
b:75.8
occ:1.00
|
F3
|
A:TFA402
|
0.0
|
75.8
|
1.0
|
C2
|
A:TFA402
|
1.4
|
70.7
|
1.0
|
F2
|
A:TFA402
|
2.2
|
80.7
|
1.0
|
F1
|
A:TFA402
|
2.3
|
71.7
|
1.0
|
C1
|
A:TFA402
|
2.3
|
75.5
|
1.0
|
HE
|
A:ARG230
|
2.7
|
65.6
|
1.0
|
HG2
|
A:ARG230
|
2.9
|
57.6
|
1.0
|
HD13
|
A:ILE168
|
3.0
|
49.4
|
1.0
|
O
|
A:TFA402
|
3.0
|
75.2
|
1.0
|
OXT
|
A:TFA402
|
3.1
|
85.2
|
1.0
|
HG2
|
A:ARG188
|
3.1
|
62.1
|
1.0
|
HD2
|
A:ARG230
|
3.1
|
63.6
|
1.0
|
HG21
|
A:ILE168
|
3.2
|
44.3
|
1.0
|
NE
|
A:ARG230
|
3.4
|
54.6
|
1.0
|
CD
|
A:ARG230
|
3.5
|
52.9
|
1.0
|
HB3
|
A:HIS234
|
3.5
|
44.3
|
1.0
|
HB2
|
A:HIS234
|
3.6
|
44.3
|
1.0
|
CG
|
A:ARG230
|
3.6
|
47.9
|
1.0
|
HE
|
A:ARG188
|
3.9
|
67.5
|
1.0
|
CD1
|
A:ILE168
|
3.9
|
41.1
|
1.0
|
CB
|
A:HIS234
|
3.9
|
36.9
|
1.0
|
HD12
|
A:ILE168
|
4.0
|
49.4
|
1.0
|
CG
|
A:ARG188
|
4.0
|
51.7
|
1.0
|
CG
|
A:HIS234
|
4.1
|
37.9
|
1.0
|
CG2
|
A:ILE168
|
4.1
|
36.9
|
1.0
|
HA
|
A:ALA231
|
4.2
|
48.2
|
1.0
|
ND1
|
A:HIS234
|
4.2
|
35.9
|
1.0
|
HD22
|
A:LEU191
|
4.2
|
53.7
|
1.0
|
HG3
|
A:ARG230
|
4.2
|
57.6
|
1.0
|
HA
|
A:ARG188
|
4.3
|
59.4
|
1.0
|
HG23
|
A:ILE168
|
4.3
|
44.3
|
1.0
|
HG3
|
A:ARG188
|
4.4
|
62.1
|
1.0
|
NE
|
A:ARG188
|
4.4
|
56.2
|
1.0
|
HB3
|
A:ARG230
|
4.4
|
49.7
|
1.0
|
HD11
|
A:ILE168
|
4.4
|
49.4
|
1.0
|
HD23
|
A:LEU191
|
4.4
|
53.7
|
1.0
|
O
|
A:ARG230
|
4.4
|
37.1
|
1.0
|
HD3
|
A:ARG230
|
4.5
|
63.6
|
1.0
|
HH21
|
A:ARG230
|
4.5
|
73.1
|
1.0
|
HD3
|
A:ARG188
|
4.5
|
72.9
|
1.0
|
CD
|
A:ARG188
|
4.6
|
60.7
|
1.0
|
HG22
|
A:ILE168
|
4.6
|
44.3
|
1.0
|
CZ
|
A:ARG230
|
4.6
|
60.1
|
1.0
|
CB
|
A:ARG230
|
4.6
|
41.3
|
1.0
|
C
|
A:ARG230
|
4.7
|
39.4
|
1.0
|
CD2
|
A:LEU191
|
4.8
|
44.7
|
1.0
|
CG1
|
A:ILE168
|
4.9
|
36.5
|
1.0
|
CD2
|
A:HIS234
|
4.9
|
36.9
|
1.0
|
HG12
|
A:ILE168
|
4.9
|
43.9
|
1.0
|
HB2
|
A:LEU191
|
4.9
|
51.4
|
1.0
|
NH2
|
A:ARG230
|
5.0
|
60.8
|
1.0
|
N
|
A:ALA231
|
5.0
|
35.5
|
1.0
|
CB
|
A:ARG188
|
5.0
|
52.6
|
1.0
|
HB3
|
A:ARG188
|
5.0
|
63.2
|
1.0
|
CE1
|
A:HIS234
|
5.0
|
36.1
|
1.0
|
|
Fluorine binding site 8 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 8 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F401
b:55.2
occ:1.00
|
F1
|
B:TFA401
|
0.0
|
55.2
|
1.0
|
C2
|
B:TFA401
|
1.3
|
56.3
|
1.0
|
C1
|
B:TFA401
|
2.2
|
56.9
|
1.0
|
F3
|
B:TFA401
|
2.2
|
72.0
|
1.0
|
F2
|
B:TFA401
|
2.3
|
69.6
|
1.0
|
HH11
|
B:ARG250
|
2.4
|
42.2
|
1.0
|
OXT
|
B:TFA401
|
2.4
|
72.8
|
1.0
|
HD3
|
B:ARG250
|
2.7
|
36.8
|
1.0
|
HD11
|
B:LEU257
|
2.8
|
37.1
|
1.0
|
HG23
|
B:VAL325
|
3.1
|
43.7
|
1.0
|
NH1
|
B:ARG250
|
3.2
|
35.1
|
1.0
|
O
|
B:TFA401
|
3.3
|
57.4
|
1.0
|
HG3
|
B:ARG250
|
3.4
|
35.7
|
1.0
|
CD
|
B:ARG250
|
3.5
|
30.6
|
1.0
|
HH12
|
B:ARG250
|
3.6
|
42.2
|
1.0
|
HG21
|
B:VAL325
|
3.6
|
43.7
|
1.0
|
HG2
|
B:ARG250
|
3.7
|
35.7
|
1.0
|
CG
|
B:ARG250
|
3.7
|
29.7
|
1.0
|
CD1
|
B:LEU257
|
3.8
|
30.9
|
1.0
|
CG2
|
B:VAL325
|
3.8
|
36.4
|
1.0
|
HD21
|
B:LEU257
|
3.9
|
44.9
|
1.0
|
H
|
B:VAL325
|
3.9
|
38.3
|
1.0
|
HB2
|
C:ALA179
|
4.0
|
53.1
|
1.0
|
CG
|
B:HIS254
|
4.0
|
44.0
|
1.0
|
CD2
|
B:HIS254
|
4.0
|
46.0
|
1.0
|
HB2
|
B:HIS254
|
4.1
|
47.5
|
1.0
|
HB
|
B:VAL325
|
4.1
|
43.4
|
1.0
|
HD12
|
B:LEU257
|
4.1
|
37.1
|
1.0
|
HD2
|
B:HIS254
|
4.1
|
55.2
|
1.0
|
HD2
|
B:ARG250
|
4.2
|
36.8
|
1.0
|
CZ
|
B:ARG250
|
4.2
|
37.1
|
1.0
|
HD13
|
B:LEU257
|
4.2
|
37.1
|
1.0
|
HB3
|
B:HIS254
|
4.3
|
47.5
|
1.0
|
NE
|
B:ARG250
|
4.3
|
28.8
|
1.0
|
NE2
|
B:HIS254
|
4.4
|
52.4
|
1.0
|
CB
|
B:HIS254
|
4.4
|
39.5
|
1.0
|
ND1
|
B:HIS254
|
4.4
|
48.0
|
1.0
|
CB
|
B:VAL325
|
4.5
|
36.1
|
1.0
|
HG22
|
B:VAL325
|
4.5
|
43.7
|
1.0
|
HG
|
B:LEU257
|
4.5
|
42.1
|
1.0
|
CE1
|
B:HIS254
|
4.6
|
48.2
|
1.0
|
CG
|
B:LEU257
|
4.6
|
35.0
|
1.0
|
CD2
|
B:LEU257
|
4.7
|
37.3
|
1.0
|
N
|
B:VAL325
|
4.7
|
31.8
|
1.0
|
HD13
|
B:LEU277
|
4.8
|
38.0
|
1.0
|
HD1
|
B:HIS254
|
4.8
|
57.7
|
1.0
|
O
|
B:HOH519
|
4.8
|
32.6
|
1.0
|
HA
|
B:ALA324
|
4.8
|
43.3
|
1.0
|
CB
|
C:ALA179
|
4.9
|
44.2
|
1.0
|
|
Fluorine binding site 9 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 9 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F401
b:69.6
occ:1.00
|
F2
|
B:TFA401
|
0.0
|
69.6
|
1.0
|
C2
|
B:TFA401
|
1.4
|
56.3
|
1.0
|
F3
|
B:TFA401
|
2.2
|
72.0
|
1.0
|
F1
|
B:TFA401
|
2.3
|
55.2
|
1.0
|
C1
|
B:TFA401
|
2.4
|
56.9
|
1.0
|
O
|
B:TFA401
|
2.7
|
57.4
|
1.0
|
HH11
|
B:ARG250
|
2.8
|
42.2
|
1.0
|
HH12
|
B:ARG250
|
3.0
|
42.2
|
1.0
|
NH1
|
B:ARG250
|
3.3
|
35.1
|
1.0
|
OXT
|
B:TFA401
|
3.5
|
72.8
|
1.0
|
HA
|
B:ALA324
|
3.6
|
43.3
|
1.0
|
HB2
|
C:ALA179
|
3.8
|
53.1
|
1.0
|
O
|
B:ASP323
|
3.9
|
36.4
|
1.0
|
H
|
B:VAL325
|
4.0
|
38.3
|
1.0
|
HG23
|
B:VAL325
|
4.2
|
43.7
|
1.0
|
NE2
|
B:HIS254
|
4.3
|
52.4
|
1.0
|
HD3
|
B:ARG250
|
4.3
|
36.8
|
1.0
|
CE1
|
B:HIS254
|
4.4
|
48.2
|
1.0
|
HB1
|
C:ALA179
|
4.5
|
53.1
|
1.0
|
CB
|
C:ALA179
|
4.5
|
44.2
|
1.0
|
CZ
|
B:ARG250
|
4.6
|
37.1
|
1.0
|
CA
|
B:ALA324
|
4.6
|
36.0
|
1.0
|
HE1
|
B:HIS254
|
4.6
|
57.9
|
1.0
|
CD2
|
B:HIS254
|
4.6
|
46.0
|
1.0
|
HG3
|
B:ARG250
|
4.6
|
35.7
|
1.0
|
N
|
B:VAL325
|
4.7
|
31.8
|
1.0
|
HB3
|
C:ALA179
|
4.7
|
53.1
|
1.0
|
ND1
|
B:HIS254
|
4.8
|
48.0
|
1.0
|
CG
|
B:HIS254
|
4.9
|
44.0
|
1.0
|
C
|
B:ASP323
|
4.9
|
37.7
|
1.0
|
HD2
|
B:HIS254
|
4.9
|
55.2
|
1.0
|
|
Fluorine binding site 10 out
of 16 in 9bw8
Go back to
Fluorine Binding Sites List in 9bw8
Fluorine binding site 10 out
of 16 in the Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Structure of P450BLT From Micromonospora Sp. Mw-13 in Complex with Fluorinated Biarylitide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F401
b:72.0
occ:1.00
|
F3
|
B:TFA401
|
0.0
|
72.0
|
1.0
|
C2
|
B:TFA401
|
1.4
|
56.3
|
1.0
|
F1
|
B:TFA401
|
2.2
|
55.2
|
1.0
|
F2
|
B:TFA401
|
2.2
|
69.6
|
1.0
|
C1
|
B:TFA401
|
2.4
|
56.9
|
1.0
|
HB2
|
C:ALA179
|
2.4
|
53.1
|
1.0
|
ND1
|
B:HIS254
|
3.0
|
48.0
|
1.0
|
OXT
|
B:TFA401
|
3.0
|
72.8
|
1.0
|
CE1
|
B:HIS254
|
3.1
|
48.2
|
1.0
|
HD1
|
B:HIS254
|
3.2
|
57.7
|
1.0
|
O
|
B:TFA401
|
3.2
|
57.4
|
1.0
|
CB
|
C:ALA179
|
3.2
|
44.2
|
1.0
|
HB1
|
C:ALA179
|
3.2
|
53.1
|
1.0
|
CG
|
B:HIS254
|
3.3
|
44.0
|
1.0
|
HE1
|
B:HIS254
|
3.4
|
57.9
|
1.0
|
NE2
|
B:HIS254
|
3.4
|
52.4
|
1.0
|
CD2
|
B:HIS254
|
3.6
|
46.0
|
1.0
|
HB3
|
C:ALA179
|
3.8
|
53.1
|
1.0
|
HB3
|
B:HIS254
|
3.9
|
47.5
|
1.0
|
HA
|
C:ALA179
|
4.0
|
47.5
|
1.0
|
HH11
|
B:ARG250
|
4.1
|
42.2
|
1.0
|
CB
|
B:HIS254
|
4.1
|
39.5
|
1.0
|
HD2
|
B:HIS254
|
4.2
|
55.2
|
1.0
|
HD11
|
B:LEU257
|
4.2
|
37.1
|
1.0
|
CA
|
C:ALA179
|
4.2
|
39.5
|
1.0
|
HB2
|
B:HIS254
|
4.3
|
47.5
|
1.0
|
O
|
B:HOH519
|
4.5
|
32.6
|
1.0
|
H
|
C:ALA179
|
4.6
|
43.2
|
1.0
|
OE2
|
B:GLU256
|
4.7
|
47.6
|
1.0
|
NH1
|
B:ARG250
|
4.8
|
35.1
|
1.0
|
H
|
B:VAL325
|
4.8
|
38.3
|
1.0
|
N
|
C:ALA179
|
4.8
|
36.0
|
1.0
|
HD3
|
B:ARG250
|
4.8
|
36.8
|
1.0
|
HH12
|
B:ARG250
|
4.8
|
42.2
|
1.0
|
HG3
|
B:ARG250
|
4.8
|
35.7
|
1.0
|
HD21
|
B:LEU257
|
4.9
|
44.9
|
1.0
|
HG23
|
B:VAL325
|
4.9
|
43.7
|
1.0
|
|
Reference:
Y.Zhao,
J.Gullick,
M.H.Hansen,
L.Coe,
M.Treisman,
R.B.Schittenhelm,
A.Mckay,
L.A.M.Murray,
J.Tailhades,
J.J.De Voss,
E.H.Krenske,
M.J.Cryle.
Loss of Fluorine During Crosslinking By the Biarylitide P450BLT Proceeds Due to Restricted Peptide Orientation Chem.Commun.(Camb.) 2024.
ISSN: ESSN 1364-548X
DOI: 10.1039/D4CC04092A
Page generated: Wed Nov 27 17:32:28 2024
|