Fluorine in PDB 9eco: E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
All present enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4:
2.7.7.101;
3.6.4.12;
Other elements in 9eco:
The structure of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Fluorine atom in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
(pdb code 9eco). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 20 binding sites of Fluorine where determined in the
E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4, PDB code: 9eco:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 20 in 9eco
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Fluorine Binding Sites List in 9eco
Fluorine binding site 1 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:127.5
occ:1.00
|
F1
|
A:ALF501
|
0.0
|
127.5
|
1.0
|
AL
|
A:ALF501
|
1.8
|
123.0
|
1.0
|
MG
|
B:MG1002
|
2.0
|
97.3
|
1.0
|
HH11
|
A:ARG442
|
2.3
|
115.0
|
1.0
|
F4
|
A:ALF501
|
2.5
|
118.0
|
1.0
|
F3
|
A:ALF501
|
2.6
|
119.7
|
1.0
|
O2B
|
B:ADP1001
|
2.7
|
91.3
|
1.0
|
O1B
|
B:ADP1001
|
2.9
|
100.2
|
1.0
|
NH1
|
A:ARG442
|
2.9
|
114.5
|
1.0
|
HH12
|
A:ARG442
|
3.1
|
114.9
|
1.0
|
PB
|
B:ADP1001
|
3.3
|
98.4
|
1.0
|
HG2
|
B:GLU262
|
3.4
|
113.8
|
1.0
|
HD2
|
A:ARG442
|
3.6
|
112.8
|
1.0
|
F2
|
A:ALF501
|
3.6
|
113.4
|
1.0
|
HD3
|
A:ARG442
|
3.7
|
114.0
|
1.0
|
CD
|
A:ARG442
|
4.0
|
114.4
|
1.0
|
CZ
|
A:ARG442
|
4.0
|
113.3
|
1.0
|
OG1
|
B:THR238
|
4.1
|
102.7
|
1.0
|
O3A
|
B:ADP1001
|
4.2
|
103.8
|
1.0
|
CG
|
B:GLU262
|
4.3
|
114.5
|
1.0
|
OE2
|
B:GLU262
|
4.3
|
118.1
|
1.0
|
O2A
|
B:ADP1001
|
4.4
|
92.2
|
1.0
|
NE
|
A:ARG442
|
4.5
|
111.2
|
1.0
|
HG1
|
B:THR238
|
4.5
|
98.5
|
1.0
|
O3B
|
B:ADP1001
|
4.6
|
102.5
|
1.0
|
HG3
|
B:GLU262
|
4.6
|
115.0
|
1.0
|
HE3
|
B:LYS237
|
4.6
|
90.6
|
1.0
|
HZ2
|
A:LYS440
|
4.6
|
110.8
|
1.0
|
CD
|
B:GLU262
|
4.6
|
115.7
|
1.0
|
HE1
|
B:TYR344
|
4.7
|
101.4
|
1.0
|
HE22
|
B:GLN384
|
4.7
|
102.4
|
1.0
|
PA
|
B:ADP1001
|
4.9
|
101.2
|
1.0
|
H
|
B:SER234
|
5.0
|
98.4
|
1.0
|
O
|
A:GLN410
|
5.0
|
119.9
|
1.0
|
HB
|
B:THR238
|
5.0
|
97.0
|
1.0
|
|
Fluorine binding site 2 out
of 20 in 9eco
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Fluorine Binding Sites List in 9eco
Fluorine binding site 2 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:113.4
occ:1.00
|
F2
|
A:ALF501
|
0.0
|
113.4
|
1.0
|
AL
|
A:ALF501
|
1.8
|
123.0
|
1.0
|
F4
|
A:ALF501
|
2.5
|
118.0
|
1.0
|
F3
|
A:ALF501
|
2.5
|
119.7
|
1.0
|
HZ2
|
A:LYS440
|
2.6
|
110.8
|
1.0
|
HB3
|
B:PRO233
|
2.7
|
100.5
|
1.0
|
HZ1
|
A:LYS440
|
2.7
|
111.0
|
1.0
|
O2B
|
B:ADP1001
|
2.7
|
91.3
|
1.0
|
HA
|
A:GLN410
|
3.0
|
110.0
|
1.0
|
HA
|
B:PRO233
|
3.0
|
99.5
|
1.0
|
NZ
|
A:LYS440
|
3.1
|
110.9
|
1.0
|
H
|
B:SER234
|
3.5
|
98.4
|
1.0
|
CB
|
B:PRO233
|
3.5
|
94.2
|
1.0
|
O
|
A:GLN410
|
3.5
|
119.9
|
1.0
|
HE22
|
B:GLN384
|
3.5
|
102.4
|
1.0
|
F1
|
A:ALF501
|
3.6
|
127.5
|
1.0
|
HZ3
|
A:LYS440
|
3.6
|
111.6
|
1.0
|
CA
|
B:PRO233
|
3.7
|
97.7
|
1.0
|
HE21
|
B:GLN384
|
3.7
|
106.7
|
1.0
|
HH11
|
A:ARG442
|
3.7
|
115.0
|
1.0
|
HH12
|
A:ARG442
|
3.8
|
114.9
|
1.0
|
HG3
|
B:PRO233
|
3.8
|
103.5
|
1.0
|
NE2
|
B:GLN384
|
3.9
|
106.1
|
1.0
|
CA
|
A:GLN410
|
3.9
|
109.7
|
1.0
|
HE3
|
A:LYS440
|
3.9
|
105.7
|
1.0
|
O
|
A:GLU409
|
4.0
|
110.3
|
1.0
|
OE1
|
A:GLN410
|
4.0
|
112.1
|
1.0
|
NH1
|
A:ARG442
|
4.1
|
114.5
|
1.0
|
N
|
B:SER234
|
4.1
|
98.2
|
1.0
|
C
|
A:GLN410
|
4.1
|
113.3
|
1.0
|
CE
|
A:LYS440
|
4.1
|
106.1
|
1.0
|
HB2
|
B:PRO233
|
4.2
|
97.9
|
1.0
|
CG
|
B:PRO233
|
4.2
|
99.7
|
1.0
|
PB
|
B:ADP1001
|
4.2
|
98.4
|
1.0
|
HB3
|
A:GLN410
|
4.2
|
110.8
|
1.0
|
C
|
B:PRO233
|
4.4
|
97.2
|
1.0
|
HZ2
|
B:LYS237
|
4.4
|
92.7
|
1.0
|
CB
|
A:GLN410
|
4.7
|
111.4
|
1.0
|
HE2
|
A:LYS440
|
4.7
|
108.1
|
1.0
|
HG2
|
B:PRO233
|
4.8
|
103.4
|
1.0
|
C
|
A:GLU409
|
4.8
|
109.6
|
1.0
|
N
|
A:GLN410
|
4.8
|
109.9
|
1.0
|
N
|
B:PRO233
|
4.9
|
98.1
|
1.0
|
HD2
|
A:LYS440
|
4.9
|
106.0
|
1.0
|
O3A
|
B:ADP1001
|
5.0
|
103.8
|
1.0
|
O3B
|
B:ADP1001
|
5.0
|
102.5
|
1.0
|
|
Fluorine binding site 3 out
of 20 in 9eco
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Fluorine Binding Sites List in 9eco
Fluorine binding site 3 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:119.7
occ:1.00
|
F3
|
A:ALF501
|
0.0
|
119.7
|
1.0
|
HH11
|
A:ARG442
|
1.7
|
115.0
|
1.0
|
AL
|
A:ALF501
|
1.8
|
123.0
|
1.0
|
NH1
|
A:ARG442
|
2.3
|
114.5
|
1.0
|
HZ2
|
A:LYS440
|
2.3
|
110.8
|
1.0
|
HD3
|
A:ARG442
|
2.5
|
114.0
|
1.0
|
F2
|
A:ALF501
|
2.5
|
113.4
|
1.0
|
F1
|
A:ALF501
|
2.6
|
127.5
|
1.0
|
HH12
|
A:ARG442
|
2.6
|
114.9
|
1.0
|
O2B
|
B:ADP1001
|
2.7
|
91.3
|
1.0
|
NZ
|
A:LYS440
|
3.1
|
110.9
|
1.0
|
HE3
|
A:LYS440
|
3.1
|
105.7
|
1.0
|
CZ
|
A:ARG442
|
3.3
|
113.3
|
1.0
|
CD
|
A:ARG442
|
3.3
|
114.4
|
1.0
|
HZ1
|
A:LYS440
|
3.3
|
111.0
|
1.0
|
CE
|
A:LYS440
|
3.5
|
106.1
|
1.0
|
HD2
|
A:ARG442
|
3.5
|
112.8
|
1.0
|
F4
|
A:ALF501
|
3.6
|
118.0
|
1.0
|
HE2
|
A:LYS440
|
3.6
|
108.1
|
1.0
|
NE
|
A:ARG442
|
3.7
|
111.2
|
1.0
|
HZ3
|
A:LYS440
|
3.7
|
111.6
|
1.0
|
PB
|
B:ADP1001
|
3.8
|
98.4
|
1.0
|
O
|
A:GLN410
|
4.0
|
119.9
|
1.0
|
H
|
B:SER234
|
4.0
|
98.4
|
1.0
|
O3A
|
B:ADP1001
|
4.0
|
103.8
|
1.0
|
O1B
|
B:ADP1001
|
4.3
|
100.2
|
1.0
|
MG
|
B:MG1002
|
4.3
|
97.3
|
1.0
|
HB2
|
A:ARG442
|
4.3
|
109.1
|
1.0
|
NH2
|
A:ARG442
|
4.4
|
116.5
|
1.0
|
OG
|
B:SER234
|
4.5
|
102.9
|
1.0
|
HE
|
A:ARG442
|
4.5
|
112.6
|
1.0
|
HH22
|
A:ARG442
|
4.5
|
116.0
|
1.0
|
CG
|
A:ARG442
|
4.6
|
112.2
|
1.0
|
HB3
|
B:PRO233
|
4.6
|
100.5
|
1.0
|
N
|
B:SER234
|
4.7
|
98.2
|
1.0
|
HG3
|
A:ARG442
|
4.7
|
110.2
|
1.0
|
O2A
|
B:ADP1001
|
4.8
|
92.2
|
1.0
|
HA
|
B:SER234
|
4.8
|
99.2
|
1.0
|
HA
|
A:GLN410
|
4.8
|
110.0
|
1.0
|
HA
|
B:PRO233
|
4.9
|
99.5
|
1.0
|
CD
|
A:LYS440
|
4.9
|
104.7
|
1.0
|
O
|
A:ALA412
|
4.9
|
110.4
|
1.0
|
HG
|
B:SER234
|
4.9
|
103.5
|
1.0
|
CB
|
A:ARG442
|
4.9
|
108.0
|
1.0
|
OE2
|
B:GLU262
|
4.9
|
118.1
|
1.0
|
HA
|
A:ARG442
|
5.0
|
104.7
|
1.0
|
|
Fluorine binding site 4 out
of 20 in 9eco
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Fluorine Binding Sites List in 9eco
Fluorine binding site 4 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:118.0
occ:1.00
|
F4
|
A:ALF501
|
0.0
|
118.0
|
1.0
|
AL
|
A:ALF501
|
1.8
|
123.0
|
1.0
|
HE22
|
B:GLN384
|
2.2
|
102.4
|
1.0
|
F2
|
A:ALF501
|
2.5
|
113.4
|
1.0
|
F1
|
A:ALF501
|
2.5
|
127.5
|
1.0
|
O2B
|
B:ADP1001
|
2.7
|
91.3
|
1.0
|
NE2
|
B:GLN384
|
2.9
|
106.1
|
1.0
|
HE21
|
B:GLN384
|
2.9
|
106.7
|
1.0
|
HZ2
|
B:LYS237
|
3.0
|
92.7
|
1.0
|
HE3
|
B:LYS237
|
3.5
|
90.6
|
1.0
|
F3
|
A:ALF501
|
3.6
|
119.7
|
1.0
|
NZ
|
B:LYS237
|
3.7
|
92.6
|
1.0
|
PB
|
B:ADP1001
|
3.7
|
98.4
|
1.0
|
MG
|
B:MG1002
|
3.8
|
97.3
|
1.0
|
HZ1
|
B:LYS237
|
3.8
|
94.4
|
1.0
|
HE1
|
B:TYR344
|
3.9
|
101.4
|
1.0
|
O1B
|
B:ADP1001
|
4.0
|
100.2
|
1.0
|
CE
|
B:LYS237
|
4.0
|
89.4
|
1.0
|
HH11
|
A:ARG442
|
4.1
|
115.0
|
1.0
|
CD
|
B:GLN384
|
4.1
|
106.3
|
1.0
|
HA
|
B:PRO233
|
4.1
|
99.5
|
1.0
|
HH12
|
A:ARG442
|
4.2
|
114.9
|
1.0
|
CE1
|
B:TYR344
|
4.2
|
99.3
|
1.0
|
HE2
|
B:LYS237
|
4.2
|
90.6
|
1.0
|
HG2
|
B:GLN384
|
4.4
|
96.2
|
1.0
|
O3B
|
B:ADP1001
|
4.4
|
102.5
|
1.0
|
HZ3
|
B:LYS237
|
4.4
|
93.5
|
1.0
|
HG3
|
B:GLN384
|
4.4
|
97.1
|
1.0
|
NH1
|
A:ARG442
|
4.5
|
114.5
|
1.0
|
HB3
|
A:GLN410
|
4.5
|
110.8
|
1.0
|
HA
|
A:GLN410
|
4.5
|
110.0
|
1.0
|
HD1
|
B:TYR344
|
4.5
|
99.7
|
1.0
|
CG
|
B:GLN384
|
4.6
|
94.0
|
1.0
|
H
|
B:SER234
|
4.6
|
98.4
|
1.0
|
CD1
|
B:TYR344
|
4.6
|
97.6
|
1.0
|
O
|
A:GLN410
|
4.6
|
119.9
|
1.0
|
OE1
|
A:GLN410
|
4.7
|
112.1
|
1.0
|
CZ
|
B:TYR344
|
4.8
|
98.8
|
1.0
|
HZ2
|
A:LYS440
|
4.8
|
110.8
|
1.0
|
HB3
|
B:PRO233
|
4.8
|
100.5
|
1.0
|
HG2
|
B:GLU262
|
4.8
|
113.8
|
1.0
|
OE2
|
B:GLU262
|
5.0
|
118.1
|
1.0
|
OH
|
B:TYR344
|
5.0
|
100.5
|
1.0
|
|
Fluorine binding site 5 out
of 20 in 9eco
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Fluorine Binding Sites List in 9eco
Fluorine binding site 5 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:118.7
occ:1.00
|
F1
|
C:ALF1002
|
0.0
|
118.7
|
1.0
|
AL
|
C:ALF1002
|
1.8
|
108.3
|
1.0
|
MG
|
C:MG1003
|
2.0
|
94.3
|
1.0
|
F4
|
C:ALF1002
|
2.5
|
108.0
|
1.0
|
F3
|
C:ALF1002
|
2.6
|
106.7
|
1.0
|
O2B
|
C:ADP1001
|
2.7
|
95.2
|
1.0
|
O1B
|
C:ADP1001
|
2.9
|
99.9
|
1.0
|
HH11
|
B:ARG442
|
3.2
|
105.8
|
1.0
|
PB
|
C:ADP1001
|
3.3
|
95.2
|
1.0
|
HG2
|
C:GLU262
|
3.5
|
109.2
|
1.0
|
F2
|
C:ALF1002
|
3.6
|
111.2
|
1.0
|
HD2
|
B:ARG442
|
3.7
|
105.9
|
1.0
|
NH1
|
B:ARG442
|
3.8
|
106.7
|
1.0
|
OE2
|
C:GLU262
|
4.0
|
110.0
|
1.0
|
HH12
|
B:ARG442
|
4.0
|
105.2
|
1.0
|
OG1
|
C:THR238
|
4.0
|
98.0
|
1.0
|
HZ1
|
C:LYS237
|
4.1
|
92.2
|
1.0
|
HD3
|
B:ARG442
|
4.2
|
104.0
|
1.0
|
O3A
|
C:ADP1001
|
4.3
|
92.5
|
1.0
|
CD
|
B:ARG442
|
4.4
|
105.8
|
1.0
|
CG
|
C:GLU262
|
4.4
|
111.0
|
1.0
|
O3B
|
C:ADP1001
|
4.5
|
93.4
|
1.0
|
HG1
|
C:THR238
|
4.5
|
93.8
|
1.0
|
O1A
|
C:ADP1001
|
4.5
|
96.6
|
1.0
|
HE21
|
C:GLN384
|
4.7
|
92.3
|
1.0
|
CD
|
C:GLU262
|
4.7
|
116.3
|
1.0
|
CZ
|
B:ARG442
|
4.7
|
105.4
|
1.0
|
HE22
|
C:GLN384
|
4.8
|
96.7
|
1.0
|
H
|
C:SER234
|
4.8
|
90.1
|
1.0
|
HZ3
|
C:LYS237
|
4.8
|
93.8
|
1.0
|
NZ
|
C:LYS237
|
4.8
|
93.5
|
1.0
|
HZ2
|
B:LYS440
|
4.9
|
96.9
|
1.0
|
HG3
|
C:GLU262
|
4.9
|
110.8
|
1.0
|
HE1
|
C:TYR344
|
4.9
|
100.3
|
1.0
|
HB
|
C:THR238
|
4.9
|
92.4
|
1.0
|
HB3
|
C:LYS237
|
4.9
|
88.7
|
1.0
|
H
|
C:THR238
|
5.0
|
89.0
|
1.0
|
NE
|
B:ARG442
|
5.0
|
102.0
|
1.0
|
|
Fluorine binding site 6 out
of 20 in 9eco
Go back to
Fluorine Binding Sites List in 9eco
Fluorine binding site 6 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:111.2
occ:1.00
|
F2
|
C:ALF1002
|
0.0
|
111.2
|
1.0
|
AL
|
C:ALF1002
|
1.8
|
108.3
|
1.0
|
F3
|
C:ALF1002
|
2.5
|
106.7
|
1.0
|
F4
|
C:ALF1002
|
2.5
|
108.0
|
1.0
|
HA
|
C:PRO233
|
2.6
|
90.5
|
1.0
|
HB3
|
C:PRO233
|
2.6
|
90.6
|
1.0
|
H
|
C:SER234
|
2.6
|
90.1
|
1.0
|
O2B
|
C:ADP1001
|
2.7
|
95.2
|
1.0
|
HZ2
|
B:LYS440
|
2.8
|
96.9
|
1.0
|
HZ1
|
B:LYS440
|
3.0
|
97.0
|
1.0
|
HA
|
B:GLN410
|
3.2
|
100.8
|
1.0
|
CA
|
C:PRO233
|
3.3
|
90.1
|
1.0
|
NZ
|
B:LYS440
|
3.3
|
95.5
|
1.0
|
N
|
C:SER234
|
3.3
|
88.6
|
1.0
|
CB
|
C:PRO233
|
3.3
|
84.5
|
1.0
|
HE21
|
C:GLN384
|
3.4
|
92.3
|
1.0
|
HE3
|
B:LYS440
|
3.5
|
91.2
|
1.0
|
F1
|
C:ALF1002
|
3.6
|
118.7
|
1.0
|
C
|
C:PRO233
|
3.7
|
89.4
|
1.0
|
HE22
|
C:GLN384
|
3.8
|
96.7
|
1.0
|
NE2
|
C:GLN384
|
3.9
|
93.5
|
1.0
|
CE
|
B:LYS440
|
3.9
|
92.1
|
1.0
|
O
|
B:GLN410
|
4.0
|
112.2
|
1.0
|
HH11
|
B:ARG442
|
4.0
|
105.8
|
1.0
|
HG3
|
C:PRO233
|
4.0
|
92.1
|
1.0
|
HB2
|
C:PRO233
|
4.0
|
87.2
|
1.0
|
HZ3
|
B:LYS440
|
4.0
|
97.4
|
1.0
|
CA
|
B:GLN410
|
4.1
|
99.8
|
1.0
|
HZ1
|
C:LYS237
|
4.2
|
92.2
|
1.0
|
PB
|
C:ADP1001
|
4.2
|
95.2
|
1.0
|
HG2
|
B:GLN410
|
4.2
|
96.8
|
1.0
|
HB3
|
B:GLN410
|
4.3
|
98.4
|
1.0
|
CG
|
C:PRO233
|
4.3
|
88.9
|
1.0
|
HZ2
|
C:LYS237
|
4.4
|
91.1
|
1.0
|
HA
|
C:SER234
|
4.4
|
90.4
|
1.0
|
CA
|
C:SER234
|
4.4
|
88.6
|
1.0
|
O
|
B:GLU409
|
4.5
|
95.6
|
1.0
|
HE2
|
B:LYS440
|
4.5
|
93.8
|
1.0
|
C
|
B:GLN410
|
4.5
|
106.0
|
1.0
|
N
|
C:PRO233
|
4.6
|
88.4
|
1.0
|
HH12
|
B:ARG442
|
4.6
|
105.2
|
1.0
|
NH1
|
B:ARG442
|
4.6
|
106.7
|
1.0
|
CB
|
B:GLN410
|
4.6
|
96.7
|
1.0
|
HB2
|
C:SER234
|
4.7
|
91.8
|
1.0
|
NZ
|
C:LYS237
|
4.7
|
93.5
|
1.0
|
OG
|
C:SER234
|
4.8
|
95.7
|
1.0
|
HD2
|
B:LYS440
|
4.8
|
91.7
|
1.0
|
CG
|
B:GLN410
|
4.9
|
95.0
|
1.0
|
CB
|
C:SER234
|
4.9
|
91.2
|
1.0
|
O
|
C:PRO233
|
4.9
|
91.0
|
1.0
|
O3A
|
C:ADP1001
|
4.9
|
92.5
|
1.0
|
HG2
|
C:PRO233
|
4.9
|
92.7
|
1.0
|
HD3
|
B:ARG442
|
4.9
|
104.0
|
1.0
|
HZ3
|
C:LYS237
|
4.9
|
93.8
|
1.0
|
|
Fluorine binding site 7 out
of 20 in 9eco
Go back to
Fluorine Binding Sites List in 9eco
Fluorine binding site 7 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:106.7
occ:1.00
|
F3
|
C:ALF1002
|
0.0
|
106.7
|
1.0
|
AL
|
C:ALF1002
|
1.8
|
108.3
|
1.0
|
HH11
|
B:ARG442
|
1.9
|
105.8
|
1.0
|
HD3
|
B:ARG442
|
2.5
|
104.0
|
1.0
|
F2
|
C:ALF1002
|
2.5
|
111.2
|
1.0
|
F1
|
C:ALF1002
|
2.6
|
118.7
|
1.0
|
HZ2
|
B:LYS440
|
2.7
|
96.9
|
1.0
|
O2B
|
C:ADP1001
|
2.7
|
95.2
|
1.0
|
NH1
|
B:ARG442
|
2.8
|
106.7
|
1.0
|
HD2
|
B:ARG442
|
3.1
|
105.9
|
1.0
|
HH12
|
B:ARG442
|
3.2
|
105.2
|
1.0
|
CD
|
B:ARG442
|
3.2
|
105.8
|
1.0
|
HE3
|
B:LYS440
|
3.2
|
91.2
|
1.0
|
NZ
|
B:LYS440
|
3.4
|
95.5
|
1.0
|
F4
|
C:ALF1002
|
3.6
|
108.0
|
1.0
|
CE
|
B:LYS440
|
3.7
|
92.1
|
1.0
|
HE2
|
B:LYS440
|
3.7
|
93.8
|
1.0
|
CZ
|
B:ARG442
|
3.7
|
105.4
|
1.0
|
HZ1
|
B:LYS440
|
3.8
|
97.0
|
1.0
|
H
|
C:SER234
|
3.8
|
90.1
|
1.0
|
PB
|
C:ADP1001
|
3.8
|
95.2
|
1.0
|
NE
|
B:ARG442
|
3.9
|
102.0
|
1.0
|
O3A
|
C:ADP1001
|
4.1
|
92.5
|
1.0
|
HZ3
|
B:LYS440
|
4.1
|
97.4
|
1.0
|
O1B
|
C:ADP1001
|
4.1
|
99.9
|
1.0
|
O
|
B:GLN410
|
4.1
|
112.2
|
1.0
|
MG
|
C:MG1003
|
4.2
|
94.3
|
1.0
|
HG3
|
B:ARG442
|
4.4
|
103.2
|
1.0
|
OG
|
C:SER234
|
4.4
|
95.7
|
1.0
|
CG
|
B:ARG442
|
4.4
|
103.5
|
1.0
|
HA
|
C:SER234
|
4.5
|
90.4
|
1.0
|
O1A
|
C:ADP1001
|
4.5
|
96.6
|
1.0
|
N
|
C:SER234
|
4.5
|
88.6
|
1.0
|
HB2
|
B:ARG442
|
4.6
|
100.0
|
1.0
|
HE
|
B:ARG442
|
4.7
|
102.7
|
1.0
|
HA
|
B:GLN410
|
4.8
|
100.8
|
1.0
|
OE2
|
C:GLU262
|
4.8
|
110.0
|
1.0
|
HA
|
C:PRO233
|
4.9
|
90.5
|
1.0
|
HB3
|
C:PRO233
|
4.9
|
90.6
|
1.0
|
CA
|
C:SER234
|
4.9
|
88.6
|
1.0
|
HG
|
C:SER234
|
4.9
|
94.4
|
1.0
|
HA
|
B:ARG442
|
4.9
|
96.6
|
1.0
|
NH2
|
B:ARG442
|
5.0
|
107.6
|
1.0
|
PA
|
C:ADP1001
|
5.0
|
91.1
|
1.0
|
|
Fluorine binding site 8 out
of 20 in 9eco
Go back to
Fluorine Binding Sites List in 9eco
Fluorine binding site 8 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1002
b:108.0
occ:1.00
|
F4
|
C:ALF1002
|
0.0
|
108.0
|
1.0
|
AL
|
C:ALF1002
|
1.8
|
108.3
|
1.0
|
HE21
|
C:GLN384
|
2.2
|
92.3
|
1.0
|
HZ1
|
C:LYS237
|
2.3
|
92.2
|
1.0
|
F2
|
C:ALF1002
|
2.5
|
111.2
|
1.0
|
F1
|
C:ALF1002
|
2.5
|
118.7
|
1.0
|
O2B
|
C:ADP1001
|
2.7
|
95.2
|
1.0
|
NE2
|
C:GLN384
|
2.7
|
93.5
|
1.0
|
HE22
|
C:GLN384
|
2.8
|
96.7
|
1.0
|
HZ3
|
C:LYS237
|
2.8
|
93.8
|
1.0
|
NZ
|
C:LYS237
|
2.8
|
93.5
|
1.0
|
HZ2
|
C:LYS237
|
2.9
|
91.1
|
1.0
|
F3
|
C:ALF1002
|
3.6
|
106.7
|
1.0
|
HA
|
C:PRO233
|
3.6
|
90.5
|
1.0
|
PB
|
C:ADP1001
|
3.8
|
95.2
|
1.0
|
MG
|
C:MG1003
|
3.8
|
94.3
|
1.0
|
CD
|
C:GLN384
|
3.9
|
93.7
|
1.0
|
H
|
C:SER234
|
4.0
|
90.1
|
1.0
|
HG3
|
C:GLN384
|
4.1
|
90.1
|
1.0
|
O1B
|
C:ADP1001
|
4.2
|
99.9
|
1.0
|
CE
|
C:LYS237
|
4.2
|
85.4
|
1.0
|
HD2
|
C:LYS237
|
4.2
|
92.2
|
1.0
|
O3B
|
C:ADP1001
|
4.4
|
93.4
|
1.0
|
CG
|
C:GLN384
|
4.4
|
88.7
|
1.0
|
HB3
|
B:GLN410
|
4.5
|
98.4
|
1.0
|
HE3
|
C:LYS237
|
4.5
|
87.2
|
1.0
|
HB3
|
C:LYS237
|
4.6
|
88.7
|
1.0
|
CA
|
C:PRO233
|
4.6
|
90.1
|
1.0
|
HG2
|
C:GLN384
|
4.6
|
90.6
|
1.0
|
HG2
|
B:GLN410
|
4.6
|
96.8
|
1.0
|
HB3
|
C:PRO233
|
4.6
|
90.6
|
1.0
|
HE1
|
C:TYR344
|
4.7
|
100.3
|
1.0
|
HH11
|
B:ARG442
|
4.7
|
105.8
|
1.0
|
HA
|
B:GLN410
|
4.7
|
100.8
|
1.0
|
N
|
C:SER234
|
4.8
|
88.6
|
1.0
|
CD
|
C:LYS237
|
4.8
|
91.2
|
1.0
|
HE2
|
C:LYS237
|
4.8
|
87.9
|
1.0
|
OE2
|
C:GLU262
|
4.8
|
110.0
|
1.0
|
OE1
|
C:GLN384
|
4.9
|
103.3
|
1.0
|
CE1
|
C:TYR344
|
4.9
|
96.8
|
1.0
|
HZ2
|
B:LYS440
|
4.9
|
96.9
|
1.0
|
HG3
|
C:PRO233
|
5.0
|
92.1
|
1.0
|
|
Fluorine binding site 9 out
of 20 in 9eco
Go back to
Fluorine Binding Sites List in 9eco
Fluorine binding site 9 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1004
b:125.3
occ:1.00
|
F1
|
C:ALF1004
|
0.0
|
125.3
|
1.0
|
AL
|
C:ALF1004
|
1.8
|
111.0
|
1.0
|
MG
|
D:MG1002
|
2.0
|
86.2
|
1.0
|
HH12
|
C:ARG442
|
2.4
|
104.0
|
1.0
|
F4
|
C:ALF1004
|
2.5
|
105.6
|
1.0
|
F3
|
C:ALF1004
|
2.6
|
108.7
|
1.0
|
HH11
|
C:ARG442
|
2.6
|
105.1
|
1.0
|
O2B
|
D:ADP1001
|
2.7
|
93.9
|
1.0
|
NH1
|
C:ARG442
|
2.8
|
107.2
|
1.0
|
O1B
|
D:ADP1001
|
2.8
|
102.9
|
1.0
|
PB
|
D:ADP1001
|
3.3
|
93.2
|
1.0
|
HG2
|
D:GLU262
|
3.4
|
108.3
|
1.0
|
F2
|
C:ALF1004
|
3.6
|
104.2
|
1.0
|
O1A
|
D:ADP1001
|
4.0
|
92.9
|
1.0
|
OG1
|
D:THR238
|
4.0
|
98.5
|
1.0
|
CZ
|
C:ARG442
|
4.1
|
102.2
|
1.0
|
OE2
|
D:GLU262
|
4.2
|
105.4
|
1.0
|
HG3
|
C:ARG442
|
4.2
|
95.7
|
1.0
|
CG
|
D:GLU262
|
4.2
|
111.0
|
1.0
|
O3A
|
D:ADP1001
|
4.4
|
92.7
|
1.0
|
O3B
|
D:ADP1001
|
4.5
|
91.0
|
1.0
|
HH22
|
C:ARG442
|
4.5
|
98.9
|
1.0
|
HD3
|
C:ARG442
|
4.5
|
102.0
|
1.0
|
HG3
|
D:GLU262
|
4.6
|
108.9
|
1.0
|
HG1
|
D:THR238
|
4.6
|
94.4
|
1.0
|
CD
|
D:GLU262
|
4.6
|
110.3
|
1.0
|
HE21
|
D:GLN384
|
4.7
|
92.4
|
1.0
|
HB
|
D:THR238
|
4.7
|
91.3
|
1.0
|
NH2
|
C:ARG442
|
4.8
|
100.1
|
1.0
|
PA
|
D:ADP1001
|
4.8
|
92.5
|
1.0
|
HE3
|
D:LYS237
|
4.8
|
93.9
|
1.0
|
H
|
D:SER234
|
4.9
|
90.2
|
1.0
|
HZ2
|
C:LYS440
|
4.9
|
93.9
|
1.0
|
HE1
|
D:TYR344
|
4.9
|
98.5
|
1.0
|
NE
|
C:ARG442
|
5.0
|
100.4
|
1.0
|
H
|
D:THR238
|
5.0
|
90.3
|
1.0
|
|
Fluorine binding site 10 out
of 20 in 9eco
Go back to
Fluorine Binding Sites List in 9eco
Fluorine binding site 10 out
of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1004
b:104.2
occ:1.00
|
F2
|
C:ALF1004
|
0.0
|
104.2
|
1.0
|
AL
|
C:ALF1004
|
1.8
|
111.0
|
1.0
|
F3
|
C:ALF1004
|
2.5
|
108.7
|
1.0
|
F4
|
C:ALF1004
|
2.5
|
105.6
|
1.0
|
HB3
|
D:PRO233
|
2.6
|
88.8
|
1.0
|
HA
|
D:PRO233
|
2.6
|
87.9
|
1.0
|
O2B
|
D:ADP1001
|
2.7
|
93.9
|
1.0
|
HE21
|
D:GLN384
|
2.9
|
92.4
|
1.0
|
H
|
D:SER234
|
3.1
|
90.2
|
1.0
|
HZ1
|
C:LYS440
|
3.2
|
94.0
|
1.0
|
CA
|
D:PRO233
|
3.3
|
84.9
|
1.0
|
CB
|
D:PRO233
|
3.3
|
84.0
|
1.0
|
HZ2
|
C:LYS440
|
3.4
|
93.9
|
1.0
|
HA
|
C:GLN410
|
3.4
|
93.6
|
1.0
|
HG3
|
D:PRO233
|
3.6
|
90.8
|
1.0
|
F1
|
C:ALF1004
|
3.6
|
125.3
|
1.0
|
N
|
D:SER234
|
3.7
|
90.1
|
1.0
|
NZ
|
C:LYS440
|
3.7
|
93.4
|
1.0
|
NE2
|
D:GLN384
|
3.8
|
91.5
|
1.0
|
HG2
|
C:GLN410
|
3.9
|
93.4
|
1.0
|
CG
|
D:PRO233
|
4.0
|
89.9
|
1.0
|
O
|
C:GLN410
|
4.0
|
106.0
|
1.0
|
HH12
|
C:ARG442
|
4.0
|
104.0
|
1.0
|
C
|
D:PRO233
|
4.0
|
86.5
|
1.0
|
HB2
|
D:PRO233
|
4.0
|
85.3
|
1.0
|
PB
|
D:ADP1001
|
4.2
|
93.2
|
1.0
|
HG
|
D:SER234
|
4.2
|
95.5
|
1.0
|
HE3
|
C:LYS440
|
4.2
|
87.9
|
1.0
|
HE22
|
D:GLN384
|
4.2
|
93.9
|
1.0
|
CA
|
C:GLN410
|
4.3
|
92.1
|
1.0
|
HZ3
|
C:LYS440
|
4.4
|
93.8
|
1.0
|
HZ2
|
D:LYS237
|
4.4
|
99.3
|
1.0
|
N
|
D:PRO233
|
4.4
|
86.0
|
1.0
|
OE1
|
D:GLN384
|
4.5
|
96.8
|
1.0
|
CD
|
D:GLN384
|
4.6
|
95.0
|
1.0
|
CE
|
C:LYS440
|
4.6
|
89.0
|
1.0
|
CG
|
C:GLN410
|
4.6
|
91.3
|
1.0
|
HG2
|
D:PRO233
|
4.6
|
91.4
|
1.0
|
C
|
C:GLN410
|
4.6
|
99.4
|
1.0
|
HG3
|
C:GLN410
|
4.6
|
93.8
|
1.0
|
O3B
|
D:ADP1001
|
4.7
|
91.0
|
1.0
|
HB3
|
C:GLN410
|
4.7
|
92.9
|
1.0
|
NH1
|
C:ARG442
|
4.7
|
107.2
|
1.0
|
O
|
C:GLU409
|
4.7
|
94.4
|
1.0
|
CB
|
C:GLN410
|
4.8
|
90.9
|
1.0
|
HE2
|
D:LYS237
|
4.8
|
89.5
|
1.0
|
HA
|
D:SER234
|
4.9
|
91.7
|
1.0
|
CA
|
D:SER234
|
4.9
|
90.7
|
1.0
|
CD
|
D:PRO233
|
4.9
|
90.4
|
1.0
|
OG
|
D:SER234
|
4.9
|
100.9
|
1.0
|
HH11
|
C:ARG442
|
4.9
|
105.1
|
1.0
|
O1B
|
D:ADP1001
|
5.0
|
102.9
|
1.0
|
|
Reference:
A.J.Oakley,
Z.Q.Xu.
Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Sun Dec 15 10:30:25 2024
|