Fluorine in PDB 9ed3: Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride

The structure of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride also contains other interesting chemical elements:

Aluminium	(Al)	6 atoms
Magnesium	(Mg)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride (pdb code 9ed3). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride, PDB code: 9ed3:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:59.0 occ:1.00 F1 A:AF3502 0.0 59.0 1.0 AL A:AF3502 1.6 75.6 1.0 O2B A:ADP501 2.1 29.5 1.0 CB A:SER192 2.2 40.9 1.0 F2 A:AF3502 2.8 56.4 1.0 F3 A:AF3502 2.8 70.0 1.0 OG A:SER192 2.9 56.4 1.0 N A:SER192 2.9 20.9 1.0 CA A:SER192 2.9 26.8 1.0 PB A:ADP501 3.5 28.6 1.0 OD2 A:ASP280 3.6 28.5 1.0 C A:LYS191 4.0 24.9 1.0 O1A A:ADP501 4.0 37.7 1.0 O1B A:ADP501 4.2 31.6 1.0 C A:SER192 4.4 29.9 1.0 O3A A:ADP501 4.4 21.4 1.0 CB A:LYS191 4.4 30.3 1.0 O3B A:ADP501 4.5 38.7 1.0 CG A:ASP280 4.5 43.0 1.0 PA A:ADP501 4.5 28.0 1.0 OD1 A:ASP280 4.5 50.8 1.0 O2A A:ADP501 4.6 43.3 1.0 CA A:LYS191 4.6 21.6 1.0 O A:LYS191 4.7 50.1 1.0 N A:LYS191 4.9 25.8 1.0 N A:GLN193 5.0 30.7 1.0

Fluorine binding site 2 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:56.4 occ:1.00 F2 A:AF3502 0.0 56.4 1.0 AL A:AF3502 1.6 75.6 1.0 F1 A:AF3502 2.8 59.0 1.0 F3 A:AF3502 2.8 70.0 1.0 OG A:SER192 2.9 56.4 1.0 CB A:SER192 2.9 40.9 1.0 O2B A:ADP501 3.2 29.5 1.0 OG1 A:THR223 3.3 41.2 1.0 O2A A:ADP501 3.5 43.3 1.0 CB A:THR223 3.6 44.8 1.0 O1A A:ADP501 4.2 37.7 1.0 CG2 A:THR223 4.2 34.4 1.0 PA A:ADP501 4.2 28.0 1.0 O A:THR223 4.3 53.2 1.0 CA A:SER192 4.4 26.8 1.0 PB A:ADP501 4.4 28.6 1.0 O3B A:ADP501 4.6 38.7 1.0 O3A A:ADP501 4.8 21.4 1.0 N A:SER192 4.9 20.9 1.0 CA A:THR223 4.9 35.4 1.0

Fluorine binding site 3 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:F502 b:70.0 occ:1.00 F3 A:AF3502 0.0 70.0 1.0 OG A:SER192 0.9 56.4 1.0 AL A:AF3502 1.6 75.6 1.0 CB A:SER192 2.1 40.9 1.0 F2 A:AF3502 2.8 56.4 1.0 F1 A:AF3502 2.8 59.0 1.0 CA A:SER192 3.0 26.8 1.0 OD2 A:ASP280 3.2 28.5 1.0 OH A:TYR217 3.9 39.5 1.0 CG A:ASP280 3.9 43.0 1.0 C A:SER192 3.9 29.9 1.0 OD1 A:ASP280 4.0 50.8 1.0 OG1 A:THR223 4.0 41.2 1.0 O A:THR223 4.0 53.2 1.0 O A:SER192 4.1 32.3 1.0 N A:SER192 4.2 20.9 1.0 CE1 A:HIS196 4.4 36.3 1.0 O2B A:ADP501 4.5 29.5 1.0 ND1 A:HIS196 4.6 33.5 1.0 CB A:THR223 4.7 44.8 1.0 C A:THR223 4.9 49.2 1.0 N A:GLN193 4.9 30.7 1.0

Fluorine binding site 4 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ C:F502 b:54.9 occ:1.00 F1 C:AF3502 0.0 54.9 1.0 AL C:AF3502 1.6 46.7 1.0 OE1 C:GLU221 2.4 41.9 1.0 F3 C:AF3502 2.8 33.1 1.0 F2 C:AF3502 2.8 37.3 1.0 OG C:SER192 2.8 31.2 1.0 OD1 C:ASP280 3.2 40.0 1.0 OG1 C:THR223 3.3 40.9 1.0 CD C:GLU221 3.4 41.9 1.0 OD2 C:ASP280 3.6 35.9 1.0 CG C:ASP280 3.8 37.2 1.0 O2B C:ADP501 4.1 29.6 1.0 CB C:SER192 4.1 28.1 1.0 OE2 C:GLU221 4.3 43.7 1.0 CG C:GLU221 4.3 39.1 1.0 CB C:THR223 4.3 34.5 1.0 CB C:GLU221 4.5 41.3 1.0 CG2 C:THR223 4.5 32.1 1.0 MG C:MG503 4.8 13.3 1.0

Fluorine binding site 5 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ C:F502 b:37.3 occ:1.00 F2 C:AF3502 0.0 37.3 1.0 AL C:AF3502 1.6 46.7 1.0 OG C:SER192 2.0 31.2 1.0 CB C:SER192 2.3 28.1 1.0 O2B C:ADP501 2.5 29.6 1.0 F3 C:AF3502 2.8 33.1 1.0 F1 C:AF3502 2.8 54.9 1.0 O2A C:ADP501 2.9 28.0 1.0 CA C:SER192 3.7 15.5 1.0 PB C:ADP501 3.8 21.0 1.0 PA C:ADP501 3.9 23.7 1.0 OG1 C:THR223 3.9 40.9 1.0 O3A C:ADP501 4.0 26.0 1.0 N C:SER192 4.0 27.7 1.0 O3B C:ADP501 4.4 40.4 1.0 CB C:THR223 4.5 34.5 1.0 O1A C:ADP501 4.6 32.1 1.0 OD2 C:ASP280 4.7 35.9 1.0 C C:SER192 4.7 22.2 1.0 OE1 C:GLU221 4.8 41.9 1.0 MG C:MG503 4.8 13.3 1.0 CG2 C:THR223 5.0 32.1 1.0 O1B C:ADP501 5.0 30.7 1.0

Fluorine binding site 6 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ C:F502 b:33.1 occ:1.00 F3 C:AF3502 0.0 33.1 1.0 AL C:AF3502 1.6 46.7 1.0 O2B C:ADP501 2.0 29.6 1.0 OG C:SER192 2.7 31.2 1.0 F1 C:AF3502 2.8 54.9 1.0 F2 C:AF3502 2.8 37.3 1.0 PB C:ADP501 3.3 21.0 1.0 CB C:SER192 3.3 28.1 1.0 N C:SER192 3.4 27.7 1.0 O3B C:ADP501 3.7 40.4 1.0 CB C:LYS191 3.8 23.6 1.0 CA C:SER192 3.9 15.5 1.0 OD1 C:ASP280 3.9 40.0 1.0 O1B C:ADP501 4.0 30.7 1.0 CE C:LYS191 4.1 33.5 1.0 MG C:MG503 4.1 13.3 1.0 OD2 C:ASP280 4.2 35.9 1.0 C C:LYS191 4.3 28.8 1.0 CG2 C:THR324 4.4 36.2 1.0 CA C:LYS191 4.5 22.3 1.0 O3A C:ADP501 4.5 26.0 1.0 CG C:ASP280 4.5 37.2 1.0 OE1 C:GLU221 4.5 41.9 1.0 NZ C:LYS191 4.7 32.4 1.0 N C:LYS191 4.7 28.5 1.0 O2A C:ADP501 4.8 28.0 1.0 CG C:LYS191 4.9 24.4 1.0 CD C:LYS191 5.0 26.3 1.0

Fluorine binding site 7 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ D:F502 b:31.4 occ:1.00 F1 D:AF3502 0.0 31.4 1.0 AL D:AF3502 1.6 46.5 1.0 O2B D:ADP501 2.6 31.4 1.0 F3 D:AF3502 2.8 46.0 1.0 F2 D:AF3502 2.8 42.3 1.0 PB D:ADP501 3.7 17.2 1.0 CE D:LYS191 3.8 22.2 1.0 OD2 D:ASP280 3.8 38.5 1.0 OD1 D:ASP280 3.9 38.3 1.0 CB D:SER192 4.0 17.6 1.0 O3B D:ADP501 4.0 40.4 1.0 CB D:LYS191 4.0 17.9 1.0 N D:SER192 4.2 19.4 1.0 CG D:ASP280 4.3 37.4 1.0 MG D:MG503 4.3 15.1 1.0 O1B D:ADP501 4.4 22.7 1.0 NZ D:LYS191 4.4 13.6 1.0 CA D:SER192 4.6 19.7 1.0 OG1 D:THR324 4.6 33.6 1.0 C D:LYS191 4.6 21.0 1.0 OE1 D:GLU221 4.7 47.5 1.0 CB D:THR324 4.8 29.4 1.0 CG2 D:THR324 4.8 23.7 1.0 CA D:LYS191 4.9 18.5 1.0 CD D:LYS191 4.9 23.1 1.0 OG D:SER192 4.9 42.9 1.0

Fluorine binding site 8 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ D:F502 b:42.3 occ:1.00 F2 D:AF3502 0.0 42.3 1.0 AL D:AF3502 1.6 46.5 1.0 O2B D:ADP501 2.3 31.4 1.0 F3 D:AF3502 2.8 46.0 1.0 F1 D:AF3502 2.8 31.4 1.0 CB D:SER192 3.1 17.6 1.0 OG D:SER192 3.2 42.9 1.0 O2A D:ADP501 3.4 23.2 1.0 PB D:ADP501 3.4 17.2 1.0 O3B D:ADP501 3.7 40.4 1.0 O3A D:ADP501 3.9 23.2 1.0 PA D:ADP501 4.0 36.3 1.0 OG1 D:THR223 4.2 36.8 1.0 MG D:MG503 4.2 15.1 1.0 CB D:THR223 4.3 43.4 1.0 N D:SER192 4.4 19.4 1.0 CA D:SER192 4.4 19.7 1.0 O1A D:ADP501 4.4 38.0 1.0 CG2 D:THR223 4.5 38.0 1.0 OD2 D:ASP280 4.6 38.5 1.0 O1B D:ADP501 4.7 22.7 1.0 OE1 D:GLU221 4.9 47.5 1.0

Fluorine binding site 9 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ D:F502 b:46.0 occ:1.00 F3 D:AF3502 0.0 46.0 1.0 AL D:AF3502 1.6 46.5 1.0 OE1 D:GLU221 2.4 47.5 1.0 F2 D:AF3502 2.8 42.3 1.0 F1 D:AF3502 2.8 31.4 1.0 OG1 D:THR223 3.2 36.8 1.0 CD D:GLU221 3.2 41.0 1.0 OD2 D:ASP280 3.5 38.5 1.0 OE2 D:GLU221 3.8 40.0 1.0 CB D:GLU221 4.0 32.4 1.0 CG D:GLU221 4.0 33.7 1.0 CB D:THR223 4.1 43.4 1.0 CG2 D:THR223 4.1 38.0 1.0 O2B D:ADP501 4.4 31.4 1.0 CG D:ASP280 4.5 37.4 1.0 MG D:MG503 4.7 15.1 1.0 CB D:SER192 4.8 17.6 1.0 OD1 D:ASP280 4.9 38.3 1.0

Fluorine binding site 10 out of 18 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ E:F502 b:44.1 occ:1.00 F1 E:AF3502 0.0 44.1 1.0 AL E:AF3502 1.6 58.2 1.0 O2B E:ADP501 2.4 30.6 1.0 OG E:SER192 2.5 33.4 1.0 F3 E:AF3502 2.8 48.0 1.0 F2 E:AF3502 2.8 45.6 1.0 PB E:ADP501 3.5 31.0 1.0 CB E:SER192 3.5 27.9 1.0 OD1 E:ASP280 3.5 36.5 1.0 N E:SER192 3.8 25.8 1.0 CE E:LYS191 3.9 29.8 1.0 O3B E:ADP501 3.9 44.3 1.0 CA E:SER192 4.1 23.6 1.0 O1B E:ADP501 4.1 24.2 1.0 CB E:LYS191 4.2 11.2 1.0 CG E:ASP280 4.5 39.4 1.0 MG E:MG503 4.5 14.8 1.0 NZ E:LYS191 4.5 28.6 1.0 C E:LYS191 4.7 25.3 1.0 OD2 E:ASP280 4.7 42.8 1.0 O3A E:ADP501 4.8 26.4 1.0 O1A E:ADP501 4.8 26.3 1.0 OG1 E:THR324 4.9 39.5 1.0 CA E:LYS191 5.0 16.1 1.0 CD E:LYS191 5.0 28.2 1.0

J.Liu, S.Gore, W.-D.Heyer. Yeast RAD51-Ssdna Filament To Be Published.