Fluorine in PDB 9gsd: Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3)

All present enzymatic activity of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3):
7.2.2.10;

The structure of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) (pdb code 9gsd). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3), PDB code: 9gsd:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1303 b:67.0 occ:1.00 F1 A:BEF1303 0.0 67.0 1.0 BE A:BEF1303 1.5 59.8 1.0 F3 A:BEF1303 2.5 67.3 1.0 F2 A:BEF1303 2.6 56.3 1.0 OD1 A:ASP454 2.7 58.9 1.0 ND2 A:ASN778 2.8 62.4 1.0 NZ A:LYS751 3.2 55.7 1.0 N A:GLY687 3.4 62.3 1.0 CG A:ASP454 3.4 54.1 1.0 OD2 A:ASP454 3.5 54.7 1.0 CA A:GLY243 3.7 76.2 1.0 CG A:ASN778 3.9 61.0 1.0 CA A:THR686 4.0 61.1 1.0 MG A:MG1301 4.0 50.7 1.0 OD1 A:ASN778 4.2 63.4 1.0 C A:THR686 4.2 64.4 1.0 CE A:LYS751 4.2 55.5 1.0 CA A:GLY687 4.2 65.8 1.0 O A:THR242 4.3 89.6 1.0 OG1 A:THR686 4.3 67.4 1.0 O A:GLY243 4.6 73.2 1.0 N A:GLY243 4.6 82.5 1.0 C A:GLY243 4.6 79.9 1.0 CB A:THR686 4.7 63.3 1.0 OD2 A:ASP779 4.7 60.7 1.0 O A:VAL685 4.7 62.2 1.0 CB A:ASP454 4.8 46.6 1.0 C A:THR242 4.8 83.3 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1303 b:56.3 occ:1.00 F2 A:BEF1303 0.0 56.3 1.0 BE A:BEF1303 1.6 59.8 1.0 F3 A:BEF1303 2.5 67.3 1.0 F1 A:BEF1303 2.6 67.0 1.0 OG1 A:THR686 2.9 67.4 1.0 OD1 A:ASP454 2.9 58.9 1.0 O A:GLY243 3.1 73.2 1.0 OG1 A:THR456 3.1 65.6 1.0 N A:THR456 3.4 50.6 1.0 CB A:THR456 3.5 56.3 1.0 CB A:THR686 3.7 63.3 1.0 CA A:GLY243 3.7 76.2 1.0 N A:GLY687 3.7 62.3 1.0 C A:GLY243 3.8 79.9 1.0 CG A:ASP454 3.8 54.1 1.0 CA A:THR686 4.0 61.1 1.0 CA A:THR456 4.0 49.9 1.0 OD2 A:ASP454 4.0 54.7 1.0 N A:LYS455 4.1 47.9 1.0 MG A:MG1301 4.2 50.7 1.0 CB A:LYS455 4.3 46.4 1.0 C A:LYS455 4.4 45.9 1.0 C A:THR686 4.4 64.4 1.0 CA A:LYS455 4.4 42.0 1.0 N A:ASP688 4.5 77.4 1.0 O A:THR456 4.5 59.8 1.0 CA A:GLY687 4.6 65.8 1.0 C A:THR456 4.8 49.4 1.0 CB A:ASP688 4.8 81.4 1.0 C A:GLY687 4.9 77.5 1.0 CG2 A:THR456 4.9 61.5 1.0 CE A:LYS455 5.0 57.6 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E2 State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1303 b:67.3 occ:1.00 F3 A:BEF1303 0.0 67.3 1.0 BE A:BEF1303 1.5 59.8 1.0 MG A:MG1301 1.9 50.7 1.0 F2 A:BEF1303 2.5 56.3 1.0 F1 A:BEF1303 2.5 67.0 1.0 OD2 A:ASP454 2.7 54.7 1.0 OD1 A:ASP454 3.1 58.9 1.0 CG A:ASP454 3.3 54.1 1.0 CA A:GLY243 3.3 76.2 1.0 O A:THR456 3.3 59.8 1.0 CB A:THR456 3.7 56.3 1.0 O A:GLY243 3.9 73.2 1.0 O A:SER239 3.9 87.6 1.0 N A:THR456 4.1 50.6 1.0 C A:GLY243 4.1 79.9 1.0 C A:THR456 4.2 49.4 1.0 OG1 A:THR456 4.2 65.6 1.0 CA A:THR456 4.2 49.9 1.0 ND2 A:ASN778 4.3 62.4 1.0 N A:GLY243 4.3 82.5 1.0 OD1 A:ASN778 4.4 63.4 1.0 OD1 A:ASP775 4.6 53.6 1.0 CB A:ASP454 4.7 46.6 1.0 CG2 A:THR456 4.8 61.5 1.0 OD2 A:ASP779 4.8 60.7 1.0 CG A:ASN778 4.8 61.0 1.0

D.Vinayagam, S.Raunser, O.Sistel, U.Schulte, C.E.Constantin, D.Prumbaum, G.Zolles, B.Fakler. Cryo-Em Structure of Mouse Pmca-Nptn Complex Captured in E1 State Without Calcium To Be Published.