Fluorine in PDB 9gsy: Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3)

All present enzymatic activity of Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3):
7.2.2.10;

The structure of Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3) (pdb code 9gsy). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3), PDB code: 9gsy:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:43.3 occ:1.00 F1 A:BEF1301 0.0 43.3 1.0 BE A:BEF1301 1.5 43.3 1.0 MG A:MG1302 1.9 43.7 1.0 OD2 A:ASP454 2.4 36.7 1.0 F3 A:BEF1301 2.5 43.3 1.0 F2 A:BEF1301 2.6 43.3 1.0 OD1 A:ASP775 3.3 42.7 1.0 O A:THR456 3.5 41.0 1.0 CG A:ASP454 3.6 36.7 1.0 O A:SER239 3.9 70.0 1.0 ND2 A:ASN778 4.0 49.1 1.0 CA A:GLY776 4.1 45.2 1.0 OD1 A:ASP454 4.2 36.7 1.0 N A:GLY776 4.2 45.2 1.0 O A:SER240 4.4 63.8 1.0 CG A:ASP775 4.5 42.7 1.0 C A:THR456 4.5 41.0 1.0 CB A:ASP454 4.7 36.7 1.0 CA A:GLY243 4.7 63.7 1.0 CB A:THR456 4.7 41.0 1.0 C A:ASP775 4.9 42.7 1.0 CG A:ASN778 5.0 49.1 1.0 OD2 A:ASP775 5.0 42.7 1.0 CB A:ASN778 5.0 49.1 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:43.3 occ:1.00 F2 A:BEF1301 0.0 43.3 1.0 BE A:BEF1301 1.6 43.3 1.0 F3 A:BEF1301 2.5 43.3 1.0 F1 A:BEF1301 2.6 43.3 1.0 OD2 A:ASP454 2.7 36.7 1.0 OD1 A:ASP454 2.9 36.7 1.0 CG A:ASP454 3.2 36.7 1.0 CA A:GLY243 3.5 63.7 1.0 MG A:MG1302 3.6 43.7 1.0 CB A:THR456 3.7 41.0 1.0 O A:GLY243 3.8 63.7 1.0 O A:THR456 3.9 41.0 1.0 OG1 A:THR686 3.9 45.0 1.0 N A:THR456 4.1 41.0 1.0 OG1 A:THR456 4.2 41.0 1.0 C A:GLY243 4.2 63.7 1.0 CA A:THR456 4.3 41.0 1.0 ND2 A:ASN778 4.5 49.1 1.0 O A:SER239 4.5 70.0 1.0 C A:THR456 4.6 41.0 1.0 CB A:ASP454 4.7 36.7 1.0 N A:GLY243 4.7 63.7 1.0 N A:GLY687 4.7 54.0 1.0 NZ A:LYS751 4.8 43.5 1.0 CG2 A:THR456 4.8 41.0 1.0 N A:LYS455 4.9 39.7 1.0 CB A:THR686 4.9 45.0 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3) within 5.0Å range: probe atom residue distance (Å) B Occ A:F1301 b:43.3 occ:1.00 F3 A:BEF1301 0.0 43.3 1.0 BE A:BEF1301 1.5 43.3 1.0 OD2 A:ASP454 2.0 36.7 1.0 F2 A:BEF1301 2.5 43.3 1.0 F1 A:BEF1301 2.5 43.3 1.0 CG A:ASP454 2.6 36.7 1.0 OD1 A:ASP454 2.8 36.7 1.0 NZ A:LYS751 2.9 43.5 1.0 CB A:ASN778 3.5 49.1 1.0 ND2 A:ASN778 3.6 49.1 1.0 CB A:ASP454 3.9 36.7 1.0 CG A:ASN778 3.9 49.1 1.0 MG A:MG1302 4.0 43.7 1.0 CE A:LYS751 4.3 43.5 1.0 OD2 A:ASP779 4.6 42.1 1.0 CG A:ASP779 4.7 42.1 1.0 CA A:ASN778 4.8 49.1 1.0 OD1 A:ASP779 4.8 42.1 1.0 OD1 A:ASN778 4.8 49.1 1.0 N A:ASP779 4.9 42.1 1.0 O A:THR456 5.0 41.0 1.0 CA A:ASP454 5.0 36.7 1.0

D.Vinayagam, S.Raunser, O.Sistel, U.Schulte, C.E.Constantin, D.Prumbaum, G.Zolles, B.Fakler. Cryo-Em Structure of Mouse Pmca Captured in E2-P State (BEF3) To Be Published.