Fluorine in PDB 9io0: Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Esidues

The binding sites of Fluorine atom in the Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Esidues (pdb code 9io0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Esidues, PDB code: 9io0:

Fluorine binding site 1 out of 1 in the Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Esidues


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Interaction Between A Fluoroquinolone Derivative KG022 and Rnas: Effect of Base Pairs 5' Adjacent to the Bulge Out Esidues within 5.0Å range: probe atom residue distance (Å) B Occ A:F101 b:0.7 occ:1.00 F9 A:53D101 0.0 0.7 1.0 C9 A:53D101 1.4 0.6 1.0 C8 A:53D101 2.4 0.5 1.0 C10 A:53D101 2.4 0.6 1.0 H10 A:53D101 2.6 0.6 1.0 N14 A:53D101 2.8 0.6 1.0 H2' A:U4 2.9 0.3 1.0 C2 A:U4 3.0 0.2 1.0 N3 A:U4 3.0 0.2 1.0 H5'' A:G5 3.3 0.3 1.0 N1 A:U4 3.3 0.2 1.0 C4 A:U4 3.4 0.2 1.0 H3 A:U4 3.4 0.2 1.0 H192 A:53D101 3.4 2.0 1.0 O2 A:U4 3.5 0.2 1.0 C6 A:U4 3.6 0.2 1.0 C7 A:53D101 3.6 0.4 1.0 C5 A:U4 3.6 0.2 1.0 C3 A:53D101 3.7 0.5 1.0 C19 A:53D101 3.7 1.3 1.0 H3' A:U4 3.7 0.3 1.0 C2' A:U4 3.8 0.3 1.0 H151 A:53D101 3.9 2.3 1.0 O4' A:G5 3.9 0.3 1.0 C15 A:53D101 4.0 1.5 1.0 O4 A:U4 4.1 0.2 1.0 C5' A:G5 4.1 0.3 1.0 H61 A:A17 4.1 0.1 1.0 O5' A:G5 4.1 0.3 1.0 C1' A:U4 4.1 0.3 1.0 C2 A:53D101 4.1 0.4 1.0 H8 A:G5 4.2 0.3 1.0 H191 A:53D101 4.2 1.7 1.0 C3' A:U4 4.3 0.3 1.0 H6 A:U4 4.3 0.3 1.0 H5 A:U4 4.4 0.3 1.0 N1 A:A17 4.4 0.1 1.0 H152 A:53D101 4.4 1.8 1.0 H7 A:53D101 4.5 0.4 1.0 C8 A:G5 4.6 0.3 1.0 C4' A:G5 4.6 0.3 1.0 OP2 A:G5 4.7 0.4 1.0 N6 A:A17 4.7 0.1 1.0 H1' A:U4 4.8 0.2 1.0 C4 A:53D101 4.9 0.5 1.0 H181 A:53D101 4.9 2.8 1.0 N9 A:G5 4.9 0.3 1.0 C6 A:A17 4.9 0.1 1.0 C18 A:53D101 4.9 1.9 1.0 O2' A:U4 5.0 0.3 1.0 P A:G5 5.0 0.4 1.0 H5' A:G5 5.0 0.3 1.0 C1' A:G5 5.0 0.3 1.0 O4 A:53D101 5.0 0.6 1.0

R.Ichijo, G.Kawai. Specific Interaction Between A Fluoroquinolone Derivative, KG022, and Rnas with A Single Bulge. Biochemistry 2025.
ISSN: ISSN 0006-2960
PubMed: 40067027
DOI: 10.1021/ACS.BIOCHEM.4C00669