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Fluorine in PDB 9jao: The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx

Enzymatic activity of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx

All present enzymatic activity of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx:
3.6.4.12;

Other elements in 9jao:

The structure of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx (pdb code 9jao). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx, PDB code: 9jao:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 9jao

Go back to Fluorine Binding Sites List in 9jao
Fluorine binding site 1 out of 3 in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1102

b:29.2
occ:1.00
F1 C:BEF1102 0.0 29.2 1.0
O3B C:ADP1101 1.0 28.7 1.0
BE C:BEF1102 1.7 29.2 1.0
N C:GLY525 2.3 26.9 1.0
PB C:ADP1101 2.3 28.7 1.0
F3 C:BEF1102 2.6 29.2 1.0
O3A C:ADP1101 2.7 28.7 1.0
F2 C:BEF1102 2.8 29.2 1.0
C C:MET524 3.0 29.5 1.0
CA C:GLY525 3.1 26.9 1.0
NH2 C:ARG965 3.1 28.5 1.0
CA C:MET524 3.1 29.5 1.0
O1B C:ADP1101 3.3 28.7 1.0
O2B C:ADP1101 3.4 28.7 1.0
CB C:MET524 3.8 29.5 1.0
CZ C:ARG965 3.9 28.5 1.0
NH1 C:ARG965 3.9 28.5 1.0
NZ C:LYS528 4.0 24.6 1.0
O C:MET524 4.1 29.5 1.0
C C:GLY525 4.2 26.9 1.0
PA C:ADP1101 4.2 28.7 1.0
O C:GLU523 4.3 30.1 1.0
CG C:MET524 4.3 29.5 1.0
N C:MET524 4.4 29.5 1.0
N C:LEU526 4.4 28.7 1.0
NH1 C:ARG962 4.6 28.9 1.0
NH2 C:ARG962 4.6 28.9 1.0
O2A C:ADP1101 4.7 28.7 1.0
CE C:LYS528 4.7 24.6 1.0
C C:GLU523 4.8 30.1 1.0
MG C:MG1103 4.9 24.7 1.0
O5' C:ADP1101 4.9 28.7 1.0

Fluorine binding site 2 out of 3 in 9jao

Go back to Fluorine Binding Sites List in 9jao
Fluorine binding site 2 out of 3 in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1102

b:29.2
occ:1.00
F2 C:BEF1102 0.0 29.2 1.0
BE C:BEF1102 1.7 29.2 1.0
NH1 C:ARG962 2.2 28.9 1.0
NH2 C:ARG965 2.6 28.5 1.0
F3 C:BEF1102 2.7 29.2 1.0
F1 C:BEF1102 2.8 29.2 1.0
O3B C:ADP1101 3.0 28.7 1.0
CZ C:ARG962 3.1 28.9 1.0
NH2 C:ARG962 3.2 28.9 1.0
O2B C:ADP1101 3.6 28.7 1.0
PB C:ADP1101 3.7 28.7 1.0
CZ C:ARG965 3.7 28.5 1.0
CA C:GLY935 3.8 27.8 1.0
MG C:MG1103 3.8 24.7 1.0
O C:LEU934 3.9 27.0 1.0
O3A C:ADP1101 3.9 28.7 1.0
NH1 C:ARG965 4.2 28.5 1.0
C C:GLY935 4.2 27.8 1.0
NE C:ARG962 4.4 28.9 1.0
O2A C:ADP1101 4.4 28.7 1.0
O C:GLY935 4.4 27.8 1.0
OE1 C:GLU629 4.6 26.8 1.0
C C:LEU934 4.7 27.0 1.0
N C:GLY935 4.8 27.8 1.0
NE C:ARG965 4.8 28.5 1.0
N C:ILE936 4.8 27.0 1.0
O C:ILE936 4.8 27.0 1.0
N C:GLY525 4.8 26.9 1.0
PA C:ADP1101 4.9 28.7 1.0
CG C:MET524 4.9 29.5 1.0
CB C:MET524 5.0 29.5 1.0
OE1 C:GLN958 5.0 31.0 1.0

Fluorine binding site 3 out of 3 in 9jao

Go back to Fluorine Binding Sites List in 9jao
Fluorine binding site 3 out of 3 in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1102

b:29.2
occ:1.00
F3 C:BEF1102 0.0 29.2 1.0
BE C:BEF1102 1.7 29.2 1.0
O3B C:ADP1101 1.9 28.7 1.0
F1 C:BEF1102 2.6 29.2 1.0
O2B C:ADP1101 2.6 28.7 1.0
PB C:ADP1101 2.7 28.7 1.0
F2 C:BEF1102 2.7 29.2 1.0
OE1 C:GLU629 3.2 26.8 1.0
MG C:MG1103 3.5 24.7 1.0
NZ C:LYS528 3.6 24.6 1.0
O1B C:ADP1101 3.7 28.7 1.0
CE C:LYS528 3.7 24.6 1.0
O3A C:ADP1101 3.9 28.7 1.0
CD C:GLU629 4.2 26.8 1.0
OE2 C:GLU629 4.3 26.8 1.0
CA C:MET524 4.5 29.5 1.0
NH2 C:ARG962 4.6 28.9 1.0
CG C:MET524 4.6 29.5 1.0
NH1 C:ARG962 4.6 28.9 1.0
N C:GLY525 4.7 26.9 1.0
NH2 C:ARG965 4.7 28.5 1.0
CB C:MET524 4.9 29.5 1.0

Reference:

Z.C.Chen, P.J.Hu, Y.Y.Sia, K.J.Chen, X.Xia. Nucleosome Intermediate Preference of SMARCAD1 Chromatin Remodeler, and the Structural Insights To Be Published.
Page generated: Wed Jul 16 11:43:20 2025

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