Fluorine in PDB 9jao: The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx
Enzymatic activity of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx
All present enzymatic activity of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx:
3.6.4.12;
Other elements in 9jao:
The structure of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx
(pdb code 9jao). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx, PDB code: 9jao:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 9jao
Go back to
Fluorine Binding Sites List in 9jao
Fluorine binding site 1 out
of 3 in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1102
b:29.2
occ:1.00
|
F1
|
C:BEF1102
|
0.0
|
29.2
|
1.0
|
O3B
|
C:ADP1101
|
1.0
|
28.7
|
1.0
|
BE
|
C:BEF1102
|
1.7
|
29.2
|
1.0
|
N
|
C:GLY525
|
2.3
|
26.9
|
1.0
|
PB
|
C:ADP1101
|
2.3
|
28.7
|
1.0
|
F3
|
C:BEF1102
|
2.6
|
29.2
|
1.0
|
O3A
|
C:ADP1101
|
2.7
|
28.7
|
1.0
|
F2
|
C:BEF1102
|
2.8
|
29.2
|
1.0
|
C
|
C:MET524
|
3.0
|
29.5
|
1.0
|
CA
|
C:GLY525
|
3.1
|
26.9
|
1.0
|
NH2
|
C:ARG965
|
3.1
|
28.5
|
1.0
|
CA
|
C:MET524
|
3.1
|
29.5
|
1.0
|
O1B
|
C:ADP1101
|
3.3
|
28.7
|
1.0
|
O2B
|
C:ADP1101
|
3.4
|
28.7
|
1.0
|
CB
|
C:MET524
|
3.8
|
29.5
|
1.0
|
CZ
|
C:ARG965
|
3.9
|
28.5
|
1.0
|
NH1
|
C:ARG965
|
3.9
|
28.5
|
1.0
|
NZ
|
C:LYS528
|
4.0
|
24.6
|
1.0
|
O
|
C:MET524
|
4.1
|
29.5
|
1.0
|
C
|
C:GLY525
|
4.2
|
26.9
|
1.0
|
PA
|
C:ADP1101
|
4.2
|
28.7
|
1.0
|
O
|
C:GLU523
|
4.3
|
30.1
|
1.0
|
CG
|
C:MET524
|
4.3
|
29.5
|
1.0
|
N
|
C:MET524
|
4.4
|
29.5
|
1.0
|
N
|
C:LEU526
|
4.4
|
28.7
|
1.0
|
NH1
|
C:ARG962
|
4.6
|
28.9
|
1.0
|
NH2
|
C:ARG962
|
4.6
|
28.9
|
1.0
|
O2A
|
C:ADP1101
|
4.7
|
28.7
|
1.0
|
CE
|
C:LYS528
|
4.7
|
24.6
|
1.0
|
C
|
C:GLU523
|
4.8
|
30.1
|
1.0
|
MG
|
C:MG1103
|
4.9
|
24.7
|
1.0
|
O5'
|
C:ADP1101
|
4.9
|
28.7
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 9jao
Go back to
Fluorine Binding Sites List in 9jao
Fluorine binding site 2 out
of 3 in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1102
b:29.2
occ:1.00
|
F2
|
C:BEF1102
|
0.0
|
29.2
|
1.0
|
BE
|
C:BEF1102
|
1.7
|
29.2
|
1.0
|
NH1
|
C:ARG962
|
2.2
|
28.9
|
1.0
|
NH2
|
C:ARG965
|
2.6
|
28.5
|
1.0
|
F3
|
C:BEF1102
|
2.7
|
29.2
|
1.0
|
F1
|
C:BEF1102
|
2.8
|
29.2
|
1.0
|
O3B
|
C:ADP1101
|
3.0
|
28.7
|
1.0
|
CZ
|
C:ARG962
|
3.1
|
28.9
|
1.0
|
NH2
|
C:ARG962
|
3.2
|
28.9
|
1.0
|
O2B
|
C:ADP1101
|
3.6
|
28.7
|
1.0
|
PB
|
C:ADP1101
|
3.7
|
28.7
|
1.0
|
CZ
|
C:ARG965
|
3.7
|
28.5
|
1.0
|
CA
|
C:GLY935
|
3.8
|
27.8
|
1.0
|
MG
|
C:MG1103
|
3.8
|
24.7
|
1.0
|
O
|
C:LEU934
|
3.9
|
27.0
|
1.0
|
O3A
|
C:ADP1101
|
3.9
|
28.7
|
1.0
|
NH1
|
C:ARG965
|
4.2
|
28.5
|
1.0
|
C
|
C:GLY935
|
4.2
|
27.8
|
1.0
|
NE
|
C:ARG962
|
4.4
|
28.9
|
1.0
|
O2A
|
C:ADP1101
|
4.4
|
28.7
|
1.0
|
O
|
C:GLY935
|
4.4
|
27.8
|
1.0
|
OE1
|
C:GLU629
|
4.6
|
26.8
|
1.0
|
C
|
C:LEU934
|
4.7
|
27.0
|
1.0
|
N
|
C:GLY935
|
4.8
|
27.8
|
1.0
|
NE
|
C:ARG965
|
4.8
|
28.5
|
1.0
|
N
|
C:ILE936
|
4.8
|
27.0
|
1.0
|
O
|
C:ILE936
|
4.8
|
27.0
|
1.0
|
N
|
C:GLY525
|
4.8
|
26.9
|
1.0
|
PA
|
C:ADP1101
|
4.9
|
28.7
|
1.0
|
CG
|
C:MET524
|
4.9
|
29.5
|
1.0
|
CB
|
C:MET524
|
5.0
|
29.5
|
1.0
|
OE1
|
C:GLN958
|
5.0
|
31.0
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 9jao
Go back to
Fluorine Binding Sites List in 9jao
Fluorine binding site 3 out
of 3 in the The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx
 Mono view
 Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of The Structure of SMARCAD1 Bound to the Hexasome in the Presence of Adp-Befx within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F1102
b:29.2
occ:1.00
|
F3
|
C:BEF1102
|
0.0
|
29.2
|
1.0
|
BE
|
C:BEF1102
|
1.7
|
29.2
|
1.0
|
O3B
|
C:ADP1101
|
1.9
|
28.7
|
1.0
|
F1
|
C:BEF1102
|
2.6
|
29.2
|
1.0
|
O2B
|
C:ADP1101
|
2.6
|
28.7
|
1.0
|
PB
|
C:ADP1101
|
2.7
|
28.7
|
1.0
|
F2
|
C:BEF1102
|
2.7
|
29.2
|
1.0
|
OE1
|
C:GLU629
|
3.2
|
26.8
|
1.0
|
MG
|
C:MG1103
|
3.5
|
24.7
|
1.0
|
NZ
|
C:LYS528
|
3.6
|
24.6
|
1.0
|
O1B
|
C:ADP1101
|
3.7
|
28.7
|
1.0
|
CE
|
C:LYS528
|
3.7
|
24.6
|
1.0
|
O3A
|
C:ADP1101
|
3.9
|
28.7
|
1.0
|
CD
|
C:GLU629
|
4.2
|
26.8
|
1.0
|
OE2
|
C:GLU629
|
4.3
|
26.8
|
1.0
|
CA
|
C:MET524
|
4.5
|
29.5
|
1.0
|
NH2
|
C:ARG962
|
4.6
|
28.9
|
1.0
|
CG
|
C:MET524
|
4.6
|
29.5
|
1.0
|
NH1
|
C:ARG962
|
4.6
|
28.9
|
1.0
|
N
|
C:GLY525
|
4.7
|
26.9
|
1.0
|
NH2
|
C:ARG965
|
4.7
|
28.5
|
1.0
|
CB
|
C:MET524
|
4.9
|
29.5
|
1.0
|
|
Reference:
Z.C.Chen,
P.J.Hu,
Y.Y.Sia,
K.J.Chen,
X.Xia.
Nucleosome Intermediate Preference of SMARCAD1 Chromatin Remodeler, and the Structural Insights To Be Published.
Page generated: Wed Jul 16 11:43:20 2025
|