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Fluorine in PDB 5rzq: EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432

Protein crystallography data

The structure of EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432, PDB code: 5rzq was solved by W.J.Bradshaw, V.L.Katis, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.23 / 1.88
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.560, 77.690, 99.500, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 26.4

Other elements in 5rzq:

The structure of EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432 also contains other interesting chemical elements:

Bromine (Br) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432 (pdb code 5rzq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432, PDB code: 5rzq:

Fluorine binding site 1 out of 1 in 5rzq

Go back to Fluorine Binding Sites List in 5rzq
Fluorine binding site 1 out of 1 in the EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of EPB41L3 Pandda Analysis Group Deposition -- Crystal Structure of the Ferm Domain of Human EPB41L3 in Complex with Z100642432 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F401

b:43.6
occ:0.62
F A:WJ7401 0.0 43.6 0.6
C6 A:WJ7401 1.3 40.9 0.6
C7 A:WJ7401 2.3 41.6 0.6
C5 A:WJ7401 2.4 39.1 0.6
O A:VAL337 2.8 35.3 0.6
NE2 A:HIS384 2.9 49.8 1.0
CD2 A:HIS384 3.3 46.7 1.0
O A:TRP334 3.4 31.7 0.6
CE1 A:HIS384 3.4 50.1 1.0
CB A:VAL337 3.5 33.4 0.6
C8 A:WJ7401 3.6 40.4 0.6
C4 A:WJ7401 3.6 39.3 0.6
CG1 A:VAL337 3.7 33.9 0.6
CE3 A:TRP334 3.8 31.3 0.6
C A:VAL337 3.8 34.6 0.6
CG A:HIS384 3.9 43.7 1.0
ND1 A:HIS384 4.0 48.4 1.0
C3 A:WJ7401 4.1 37.3 0.6
CA A:VAL337 4.2 33.8 0.6
C A:TRP334 4.3 32.6 0.6
CZ3 A:TRP334 4.4 30.2 0.6
CA A:TRP334 4.5 31.9 0.6
CB A:TRP334 4.6 31.2 0.6
CG2 A:VAL337 4.7 33.7 0.6
CD2 A:TRP334 4.7 30.7 0.6
N A:VAL337 4.7 32.0 0.6
N A:LEU338 4.9 35.7 0.6

Reference:

W.J.Bradshaw, V.L.Katis, J.A.Newman, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, O.Gileadi. EPB41L3 Pandda Analysis Group Deposition To Be Published.
Page generated: Tue Jul 15 07:02:46 2025

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