Fluorine in PDB 9f2l: Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist

Enzymatic activity of Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist

Other elements in 9f2l:

Fluorine Binding Sites:

Fluorine binding site 1 out of 4 in 9f2l

Fluorine Binding Sites List in 9f2l

Fluorine binding site 1 out of 4 in the Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist within 5.0Å range: probe atom residue distance (Å) B Occ A:F1103 b:132.9 occ:1.00 F1 A:ALF1103 0.0 132.9 1.0 AL A:ALF1103 1.8 132.9 1.0 F4 A:ALF1103 2.5 132.9 1.0 F3 A:ALF1103 2.5 132.9 1.0 O3B A:ADP1102 2.6 122.1 1.0 O2B A:ADP1102 3.2 122.1 1.0 PB A:ADP1102 3.3 122.1 1.0 F2 A:ALF1103 3.6 132.9 1.0 O3A A:ADP1102 3.9 122.1 1.0 HH22 A:ARG822 4.0 109.5 1.0 H A:GLY333 4.2 119.9 1.0 HZ2 A:LYS336 4.5 107.5 1.0 O2A A:ADP1102 4.6 122.1 1.0 NH2 A:ARG822 4.7 109.5 1.0 O1B A:ADP1102 4.8 122.1 1.0 HH21 A:ARG822 4.8 109.5 1.0 HA2 A:GLY333 4.9 119.9 1.0 PA A:ADP1102 4.9 122.1 1.0 HE2 A:LYS336 4.9 107.5 1.0 N A:GLY333 5.0 119.9 1.0

Fluorine binding site 2 out of 4 in 9f2l

Fluorine Binding Sites List in 9f2l

Fluorine binding site 2 out of 4 in the Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist within 5.0Å range: probe atom residue distance (Å) B Occ A:F1103 b:132.9 occ:1.00 F2 A:ALF1103 0.0 132.9 1.0 HZ2 A:LYS336 1.8 107.5 1.0 AL A:ALF1103 1.8 132.9 1.0 HA A:THR332 2.4 118.2 1.0 F4 A:ALF1103 2.5 132.9 1.0 F3 A:ALF1103 2.6 132.9 1.0 NZ A:LYS336 2.6 107.5 1.0 O2B A:ADP1102 2.8 122.1 1.0 HZ1 A:LYS336 2.9 107.5 1.0 HZ3 A:LYS336 3.0 107.5 1.0 HB A:THR332 3.1 118.2 1.0 H A:GLY333 3.2 119.9 1.0 CA A:THR332 3.3 118.2 1.0 HG22 A:THR332 3.4 118.2 1.0 F1 A:ALF1103 3.6 132.9 1.0 CB A:THR332 3.6 118.2 1.0 CE A:LYS336 3.6 107.5 1.0 HE2 A:LYS336 3.7 107.5 1.0 HE3 A:LYS336 3.7 107.5 1.0 N A:GLY333 3.9 119.9 1.0 HB2 A:ALA490 3.9 105.0 1.0 CG2 A:THR332 3.9 118.2 1.0 PB A:ADP1102 4.0 122.1 1.0 C A:THR332 4.2 118.2 1.0 O A:PRO331 4.2 111.2 1.0 O3B A:ADP1102 4.2 122.1 1.0 N A:THR332 4.2 118.2 1.0 HG21 A:THR332 4.3 118.2 1.0 HE22 A:GLN818 4.3 108.8 1.0 C A:PRO331 4.6 111.2 1.0 HH21 A:ARG822 4.7 109.5 1.0 CB A:ALA490 4.7 105.0 1.0 O1B A:ADP1102 4.8 122.1 1.0 HG23 A:THR332 4.8 118.2 1.0 HB3 A:ALA490 4.8 105.0 1.0 H A:THR332 4.8 118.2 1.0 HG3 A:LYS336 4.9 107.5 1.0 OG1 A:THR332 5.0 118.2 1.0 NE2 A:GLN818 5.0 108.8 1.0 CD A:LYS336 5.0 107.5 1.0

Fluorine binding site 3 out of 4 in 9f2l

Fluorine Binding Sites List in 9f2l

Fluorine binding site 3 out of 4 in the Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist within 5.0Å range: probe atom residue distance (Å) B Occ A:F1103 b:132.9 occ:1.00 F3 A:ALF1103 0.0 132.9 1.0 AL A:ALF1103 1.8 132.9 1.0 F1 A:ALF1103 2.5 132.9 1.0 F2 A:ALF1103 2.6 132.9 1.0 HB A:THR332 2.6 118.2 1.0 H A:GLY333 2.7 119.9 1.0 O2B A:ADP1102 2.7 122.1 1.0 HH22 A:ARG822 2.9 109.5 1.0 HH21 A:ARG822 2.9 109.5 1.0 N A:GLY333 3.2 119.9 1.0 HA A:THR332 3.2 118.2 1.0 NH2 A:ARG822 3.3 109.5 1.0 CB A:THR332 3.5 118.2 1.0 F4 A:ALF1103 3.6 132.9 1.0 CA A:THR332 3.7 118.2 1.0 C A:THR332 3.8 118.2 1.0 PB A:ADP1102 3.9 122.1 1.0 HA2 A:GLY333 3.9 119.9 1.0 HZ2 A:LYS336 4.0 107.5 1.0 CA A:GLY333 4.1 119.9 1.0 O3B A:ADP1102 4.1 122.1 1.0 OG1 A:THR332 4.3 118.2 1.0 O3A A:ADP1102 4.3 122.1 1.0 HA3 A:GLY333 4.3 119.9 1.0 HG1 A:THR332 4.5 118.2 1.0 HG22 A:THR332 4.5 118.2 1.0 CG2 A:THR332 4.5 118.2 1.0 HG21 A:THR332 4.6 118.2 1.0 CZ A:ARG822 4.6 109.5 1.0 HZ1 A:LYS336 4.6 107.5 1.0 NZ A:LYS336 4.7 107.5 1.0 O A:THR332 4.9 118.2 1.0

Fluorine binding site 4 out of 4 in 9f2l

Fluorine Binding Sites List in 9f2l

Fluorine binding site 4 out of 4 in the Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of the I923V MDA5-Dsrna Filament with Adp-ALF4 Bound and 73-Degree Helical Twist within 5.0Å range: probe atom residue distance (Å) B Occ A:F1103 b:132.9 occ:1.00 F4 A:ALF1103 0.0 132.9 1.0 AL A:ALF1103 1.8 132.9 1.0 F1 A:ALF1103 2.5 132.9 1.0 F2 A:ALF1103 2.5 132.9 1.0 HZ2 A:LYS336 2.8 107.5 1.0 O3B A:ADP1102 2.8 122.1 1.0 HE2 A:LYS336 2.8 107.5 1.0 O2B A:ADP1102 3.2 122.1 1.0 CE A:LYS336 3.4 107.5 1.0 NZ A:LYS336 3.4 107.5 1.0 PB A:ADP1102 3.4 122.1 1.0 HE3 A:LYS336 3.5 107.5 1.0 F3 A:ALF1103 3.6 132.9 1.0 HZ1 A:LYS336 3.6 107.5 1.0 HZ3 A:LYS336 4.1 107.5 1.0 O1B A:ADP1102 4.3 122.1 1.0 HB2 A:LYS336 4.5 107.5 1.0 H A:GLY333 4.6 119.9 1.0 OD1 A:ASP444 4.7 95.2 1.0 HA A:THR332 4.7 118.2 1.0 CD A:LYS336 4.8 107.5 1.0 O3A A:ADP1102 4.8 122.1 1.0 HG3 A:LYS336 4.9 107.5 1.0

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