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Fluorine in PDB 9f4d: UP1 in Complex with Z1203107138

Protein crystallography data

The structure of UP1 in Complex with Z1203107138, PDB code: 9f4d was solved by L.Dunnett, F.Prischi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.52 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.05, 43.928, 55.955, 90, 94.01, 90
R / Rfree (%) 17.6 / 19.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the UP1 in Complex with Z1203107138 (pdb code 9f4d). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the UP1 in Complex with Z1203107138, PDB code: 9f4d:

Fluorine binding site 1 out of 1 in 9f4d

Go back to Fluorine Binding Sites List in 9f4d
Fluorine binding site 1 out of 1 in the UP1 in Complex with Z1203107138


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of UP1 in Complex with Z1203107138 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:28.2
occ:0.37
F18 A:JH1201 0.0 28.2 0.4
C15 A:JH1201 1.4 18.8 0.4
C14 A:JH1201 2.3 18.2 0.4
C16 A:JH1201 2.3 20.8 0.4
CE A:MET46 3.0 28.1 1.0
NH1 A:ARG55 3.4 30.6 1.0
NH2 A:ARG55 3.6 28.4 1.0
C13 A:JH1201 3.6 23.4 0.4
C17 A:JH1201 3.6 25.8 0.4
CZ A:ARG55 3.7 17.5 1.0
CZ A:PHE57 3.8 11.6 1.0
SD A:MET46 4.1 17.9 1.0
CE2 A:PHE57 4.1 10.8 1.0
C12 A:JH1201 4.1 25.6 0.4
CG A:MET46 4.5 11.6 1.0
NE A:ARG55 4.8 17.8 1.0
CB A:MET46 4.9 9.9 1.0
CE1 A:PHE57 5.0 12.8 1.0

Reference:

L.Dunnett, F.Prischi. Enhanced Identification of Small Molecules Binding to Hnrnp A1 Via in Silico Hotspot and Cryptic Pockets Mapping Coupled with X-Ray Fragment Screening To Be Published.
Page generated: Wed Jul 16 11:38:05 2025

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