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Fluorine in PDB 2y81: Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs

Enzymatic activity of Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs

All present enzymatic activity of Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs:
3.4.21.6;

Protein crystallography data

The structure of Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs, PDB code: 2y81 was solved by R.J.Young, C.Adams, M.Blows, D.Brown, C.L.Burns-Kurtis, L.Chaudry, C.Chan, M.A.Convery, D.E.Davies, A.M.Exall, G.Foster, J.D.Harling, E.Hortense, W.R.Irving, S.Irvine, S.Jackson, S.Kleanthous, A.J.Pateman, A.N.Patikis, T.J.Roethka, S.Senger, G.J.Stelman, J.R.Toomey, R.I.West, C.Whittaker, P.Zhou, N.S.Watson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.665, 72.033, 78.151, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.5

Other elements in 2y81:

The structure of Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 1 atom
Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs (pdb code 2y81). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs, PDB code: 2y81:

Fluorine binding site 1 out of 1 in 2y81

Go back to Fluorine Binding Sites List in 2y81
Fluorine binding site 1 out of 1 in the Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1244

b:38.6
occ:1.00
 F1 A:9311244 0.0 38.6 1.0
C7 A:9311244 1.3 35.4 1.0
C6 A:9311244 2.3 32.4 1.0
C8 A:9311244 2.4 31.6 1.0
N2 A:9311244 2.8 34.3 1.0
C12 A:9311244 2.9 30.8 1.0
O A:HOH2001 3.2 50.4 1.0
O A:GLY216 3.4 26.5 1.0
C11 A:9311244 3.6 33.5 1.0
C9 A:9311244 3.6 31.6 1.0
CE2 A:PHE174 3.9 33.8 1.0
CE3 A:TRP215 3.9 24.2 1.0
C25 A:9311244 3.9 33.9 1.0
CA A:GLU217 3.9 27.8 1.0
CG A:GLU217 3.9 30.8 1.0
C A:GLY216 3.9 26.1 1.0
C10 A:9311244 4.1 31.2 1.0
N A:GLU217 4.1 25.9 1.0
CZ3 A:TRP215 4.2 25.9 1.0
O A:HOH2190 4.3 47.9 1.0
C13 A:9311244 4.3 33.8 1.0
CB A:GLU217 4.4 27.6 1.0
CD2 A:PHE174 4.5 33.9 1.0
O3 A:9311244 4.5 30.2 1.0
O A:HOH2206 4.5 40.7 1.0
CZ A:PHE174 4.7 35.9 1.0
C14 A:9311244 4.7 33.7 1.0
C28 A:9311244 4.9 37.0 1.0
N A:GLY216 4.9 24.2 1.0
CD2 A:TRP215 4.9 22.6 1.0
CA A:GLY216 5.0 25.4 1.0

Reference:

R.J.Young, C.Adams, M.Blows, D.Brown, C.L.Burns-Kurtis, C.Chan, L.Chaudry, M.A.Convery, D.E.Davies, A.M.Exall, G.Foster, J.D.Harling, E.Hortense, S.Irvine, W.R.Irving, S.Jackson, S.Kleanthous, A.J.Pateman, A.N.Patikis, T.J.Roethka, S.Senger, G.J.Stelman, J.R.Toomey, R.I.West, C.Whittaker, P.Zhou, N.S.Watson. Structure and Property Based Design of Factor Xa Inhibitors: Pyrrolidin-2-Ones with Aminoindane and Phenylpyrrolidine P4 Motifs. Bioorg.Med.Chem.Lett. V. 21 1582 2011.
ISSN: ISSN 0960-894X
PubMed: 21349710
DOI: 10.1016/J.BMCL.2011.01.131
Page generated: Wed Jul 31 16:49:49 2024

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