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Fluorine in PDB 4anj: Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4)

Protein crystallography data

The structure of Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4), PDB code: 4anj was solved by J.Menetrey, T.Isabet, V.Ropars, M.Mukherjea, O.Pylypenko, X.Liu, J.Perez, P.Vachette, H.L.Sweeney, A.M.Houdusse, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 137.36 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 193.093, 62.657, 156.040, 90.00, 117.96, 90.00
R / Rfree (%) 23.9 / 28.8

Other elements in 4anj:

The structure of Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom
Calcium (Ca) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4) (pdb code 4anj). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4), PDB code: 4anj:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 4anj

Go back to Fluorine Binding Sites List in 4anj
Fluorine binding site 1 out of 4 in the Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2232

b:13.6
occ:1.00
F1 A:ALF2232 0.0 13.6 1.0
AL A:ALF2232 1.8 13.8 1.0
MG A:MG2231 2.0 3.2 1.0
O A:HOH2034 2.5 3.1 1.0
F2 A:ALF2232 2.5 13.0 1.0
F3 A:ALF2232 2.5 13.6 1.0
N A:SER204 2.7 9.5 1.0
OG A:SER204 2.7 9.4 1.0
O1B A:ADP2230 2.7 2.6 1.0
O3B A:ADP2230 2.9 4.0 1.0
O A:HOH2035 3.2 4.9 1.0
CB A:SER204 3.3 9.1 1.0
PB A:ADP2230 3.3 3.8 1.0
CA A:SER204 3.5 9.3 1.0
F4 A:ALF2232 3.6 14.0 1.0
ND2 A:ASN200 3.6 10.0 1.0
C A:SER203 3.7 9.5 1.0
CA A:SER203 3.7 9.4 1.0
O A:SER204 4.0 9.6 1.0
OG1 A:THR158 4.0 9.8 1.0
OG A:SER203 4.1 9.2 1.0
O3A A:ADP2230 4.2 3.6 1.0
C A:SER204 4.3 9.3 1.0
O A:ASN202 4.3 9.9 1.0
O1A A:ADP2230 4.4 5.4 1.0
CB A:SER203 4.5 9.2 1.0
O2B A:ADP2230 4.7 2.8 1.0
N A:SER203 4.8 9.5 1.0
O A:SER203 4.8 9.8 1.0
CG A:ASN200 4.8 10.8 1.0
PA A:ADP2230 4.9 4.1 1.0
C A:ASN202 4.9 9.8 1.0
CB A:THR158 4.9 10.5 1.0
NZ A:LYS157 5.0 8.0 1.0

Fluorine binding site 2 out of 4 in 4anj

Go back to Fluorine Binding Sites List in 4anj
Fluorine binding site 2 out of 4 in the Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2232

b:13.0
occ:1.00
F2 A:ALF2232 0.0 13.0 1.0
AL A:ALF2232 1.8 13.8 1.0
F4 A:ALF2232 2.5 14.0 1.0
F1 A:ALF2232 2.5 13.6 1.0
O A:HOH2035 2.6 4.9 1.0
O1B A:ADP2230 2.6 2.6 1.0
NZ A:LYS157 2.8 8.0 1.0
N A:GLY459 2.9 11.0 1.0
MG A:MG2231 3.0 3.2 1.0
CE A:LYS157 3.1 9.1 1.0
O3B A:ADP2230 3.2 4.0 1.0
PB A:ADP2230 3.2 3.8 1.0
O A:ILE457 3.4 10.8 1.0
F3 A:ALF2232 3.6 13.6 1.0
CA A:ALA458 3.7 10.8 1.0
C A:ALA458 3.7 10.8 1.0
CA A:GLY459 3.7 11.5 1.0
O2B A:ADP2230 3.9 2.8 1.0
C A:ILE457 4.3 10.8 1.0
OG A:SER204 4.3 9.4 1.0
N A:ALA458 4.4 10.8 1.0
O A:HOH2056 4.5 10.1 1.0
O A:HOH2034 4.5 3.1 1.0
CB A:SER204 4.6 9.1 1.0
CD A:LYS157 4.6 9.7 1.0
OD1 A:ASP456 4.7 11.4 1.0
O3A A:ADP2230 4.7 3.6 1.0
O A:ALA458 4.8 10.8 1.0
CB A:ALA458 4.8 11.0 1.0
OG1 A:THR158 4.8 9.8 1.0
O A:SER204 4.8 9.6 1.0
CB A:LYS157 4.9 10.0 1.0
N A:SER204 4.9 9.5 1.0

Fluorine binding site 3 out of 4 in 4anj

Go back to Fluorine Binding Sites List in 4anj
Fluorine binding site 3 out of 4 in the Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2232

b:13.6
occ:1.00
F3 A:ALF2232 0.0 13.6 1.0
AL A:ALF2232 1.8 13.8 1.0
F4 A:ALF2232 2.5 14.0 1.0
F1 A:ALF2232 2.5 13.6 1.0
O1B A:ADP2230 2.7 2.6 1.0
OG A:SER203 2.8 9.2 1.0
ND2 A:ASN200 2.9 10.0 1.0
OG A:SER153 3.0 11.9 1.0
CA A:SER203 3.3 9.4 1.0
CB A:SER203 3.3 9.2 1.0
CB A:ASN200 3.5 10.9 1.0
F2 A:ALF2232 3.6 13.0 1.0
CG A:ASN200 3.7 10.8 1.0
N A:SER204 3.8 9.5 1.0
N A:GLY154 3.9 12.2 1.0
PB A:ADP2230 4.0 3.8 1.0
C A:SER203 4.1 9.5 1.0
CB A:SER153 4.2 12.2 1.0
O A:HOH2056 4.2 10.1 1.0
O A:HOH2033 4.2 8.3 1.0
CA A:SER153 4.3 12.2 1.0
O A:HOH2034 4.4 3.1 1.0
MG A:MG2231 4.4 3.2 1.0
N A:SER203 4.4 9.5 1.0
O3A A:ADP2230 4.5 3.6 1.0
O3B A:ADP2230 4.5 4.0 1.0
C A:SER153 4.5 12.2 1.0
O A:SER204 4.6 9.6 1.0
CA A:GLY154 4.7 12.0 1.0
OD1 A:ASN200 4.8 10.7 1.0
CA A:SER204 5.0 9.3 1.0
CA A:ASN200 5.0 11.1 1.0
O A:ASN202 5.0 9.9 1.0

Fluorine binding site 4 out of 4 in 4anj

Go back to Fluorine Binding Sites List in 4anj
Fluorine binding site 4 out of 4 in the Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Myosin VI (MDINSERT2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.ALF4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2232

b:14.0
occ:1.00
F4 A:ALF2232 0.0 14.0 1.0
AL A:ALF2232 1.8 13.8 1.0
F3 A:ALF2232 2.5 13.6 1.0
F2 A:ALF2232 2.5 13.0 1.0
O1B A:ADP2230 2.5 2.6 1.0
CA A:SER153 2.8 12.2 1.0
OG A:SER153 2.9 11.9 1.0
N A:GLY459 3.0 11.0 1.0
CA A:GLY459 3.1 11.5 1.0
CB A:SER153 3.1 12.2 1.0
O A:HOH2056 3.2 10.1 1.0
NZ A:LYS157 3.4 8.0 1.0
N A:GLY154 3.5 12.2 1.0
F1 A:ALF2232 3.6 13.6 1.0
C A:SER153 3.6 12.2 1.0
N A:SER153 3.7 12.2 1.0
O A:GLY459 3.8 12.0 1.0
C A:GLY459 3.8 12.0 1.0
PB A:ADP2230 3.9 3.8 1.0
O A:GLU152 4.1 12.5 1.0
C A:GLU152 4.2 12.5 1.0
C A:ALA458 4.2 10.8 1.0
CE A:LYS157 4.5 9.1 1.0
O2B A:ADP2230 4.5 2.8 1.0
O3B A:ADP2230 4.7 4.0 1.0
OG A:SER203 4.7 9.2 1.0
CA A:ALA458 4.8 10.8 1.0
CA A:GLY154 4.8 12.0 1.0
O A:HOH2033 4.8 8.3 1.0
ND2 A:ASN200 4.8 10.0 1.0
O A:SER153 4.8 12.3 1.0
MG A:MG2231 4.9 3.2 1.0
O3A A:ADP2230 4.9 3.6 1.0
N A:PHE460 5.0 12.2 1.0

Reference:

J.Menetrey, T.Isabet, V.Ropars, M.Mukherjea, O.Pylypenko, X.Liu, J.Perez, P.Vachette, H.L.Sweeney, A.M.Houdusse. Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin VI. Mol.Cell V. 48 75 2012.
ISSN: ISSN 1097-2765
PubMed: 22940248
DOI: 10.1016/J.MOLCEL.2012.07.034
Page generated: Thu Aug 1 00:01:12 2024

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