Atomistry » Fluorine » PDB 461d-4azy » 4ark
Atomistry »
  Fluorine »
    PDB 461d-4azy »
      4ark »

Fluorine in PDB 4ark: Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp

Enzymatic activity of Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp

All present enzymatic activity of Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp:
2.7.12.2;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp, PDB code: 4ark was solved by I.V.Hartung, M.Hitchcock, F.Puehler, R.Neuhaus, A.Scholz, S.Hammer, K.Petersen, G.Siemeister, D.Brittain, R.C.Hillig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.80 / 2.60
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 82.411, 82.411, 130.238, 90.00, 90.00, 120.00
R / Rfree (%) 17.205 / 21.135

Other elements in 4ark:

The structure of Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Iodine (I) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp (pdb code 4ark). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp, PDB code: 4ark:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 4ark

Go back to Fluorine Binding Sites List in 4ark
Fluorine binding site 1 out of 2 in the Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1385

b:73.8
occ:1.00
F24 A:M3K1385 0.0 73.8 1.0
C06 A:M3K1385 1.3 74.7 1.0
C01 A:M3K1385 2.3 73.0 1.0
C05 A:M3K1385 2.3 75.7 1.0
N07 A:M3K1385 2.7 70.9 1.0
OD1 A:ASP208 2.9 69.9 1.0
CD A:LYS97 3.2 66.8 1.0
C02 A:M3K1385 3.5 72.7 1.0
C04 A:M3K1385 3.6 75.5 1.0
O16 A:M3K1385 3.6 66.0 1.0
O A:HOH2025 3.7 57.4 1.0
CD1 A:ILE141 3.8 66.9 1.0
CE A:LYS97 3.9 71.8 1.0
C03 A:M3K1385 4.0 73.7 1.0
C08 A:M3K1385 4.1 68.6 1.0
CG A:ASP208 4.1 66.5 1.0
CE A:MET143 4.1 77.9 1.0
SD A:MET143 4.2 71.6 1.0
CG2 A:ILE141 4.2 60.8 1.0
CB A:ILE141 4.3 63.9 1.0
CG A:LYS97 4.5 68.2 1.0
CB A:LYS97 4.5 64.9 1.0
CA A:ASP208 4.5 62.2 1.0
N A:ASP208 4.5 62.2 1.0
C14 A:M3K1385 4.6 68.0 1.0
CG A:MET143 4.7 68.5 1.0
CG1 A:ILE141 4.7 65.0 1.0
C09 A:M3K1385 4.8 68.5 1.0
OD2 A:ASP208 4.9 65.2 1.0
CB A:ASP208 5.0 61.5 1.0

Fluorine binding site 2 out of 2 in 4ark

Go back to Fluorine Binding Sites List in 4ark
Fluorine binding site 2 out of 2 in the Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Catalytic Domain of Human Map Kinase Kinase 1 (MEK1) in Complex with A Small Molecule Inhibitor and Adp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1385

b:66.5
occ:1.00
F26 A:M3K1385 0.0 66.5 1.0
C12 A:M3K1385 1.3 67.6 1.0
C11 A:M3K1385 2.3 67.0 1.0
C13 A:M3K1385 2.3 67.5 1.0
N A:SER212 2.9 78.6 1.0
N A:VAL211 3.1 73.0 1.0
CG2 A:VAL211 3.4 80.0 1.0
O A:PHE209 3.5 56.3 1.0
C10 A:M3K1385 3.5 68.0 1.0
C08 A:M3K1385 3.6 68.6 1.0
C A:GLY210 3.6 72.2 1.0
CB A:SER212 3.7 83.3 1.0
CA A:GLY210 3.7 65.8 1.0
CA A:SER212 3.8 81.5 1.0
CA A:VAL211 3.8 76.6 1.0
C A:VAL211 3.8 79.6 1.0
O A:SER212 3.9 80.9 1.0
C09 A:M3K1385 4.0 68.5 1.0
CD1 A:LEU215 4.0 81.4 1.0
CB A:VAL211 4.2 79.3 1.0
CB A:LEU215 4.2 83.1 1.0
C A:SER212 4.3 81.0 1.0
CD2 A:LEU115 4.4 76.2 1.0
C A:PHE209 4.4 58.9 1.0
N A:GLY210 4.6 59.5 1.0
O A:GLY210 4.6 75.6 1.0
O1 A:M3K1385 4.7 72.3 1.0
CG1 A:ILE216 4.8 77.6 1.0
N07 A:M3K1385 4.8 70.9 1.0
CG A:LEU215 4.8 83.3 1.0
OG A:SER212 4.9 85.9 1.0
C15 A:M3K1385 5.0 76.8 1.0

Reference:

I.V.Hartung, M.Hitchcock, F.Puehler, R.Neuhaus, A.Scholz, S.Hammer, K.Petersen, G.Siemeister, D.Brittain, R.C.Hillig. Optimization of Allosteric Mek Inhibitors - Part 1: Venturing Into Unexplored Sar Territories Bioorg.Med.Chem.Lett. V. 23 2384 2013.
ISSN: ISSN 0960-894X
PubMed: 23474388
DOI: 10.1016/J.BMCL.2013.02.028
Page generated: Sun Dec 13 11:58:54 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy