Fluorine in PDB 4bau: Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Protein crystallography data
The structure of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa, PDB code: 4bau
was solved by
J.W.Schmidberger,
R.Schnell,
G.Schneider,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
17.57 /
1.55
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.860,
83.860,
140.570,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.735 /
17.094
|
Other elements in 4bau:
The structure of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
(pdb code 4bau). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa, PDB code: 4bau:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 4bau
Go back to
Fluorine Binding Sites List in 4bau
Fluorine binding site 1 out
of 6 in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1311
b:33.6
occ:0.90
|
F
|
A:FAH1311
|
0.0
|
33.6
|
0.9
|
CH3
|
A:FAH1311
|
1.4
|
20.3
|
0.9
|
C
|
A:FAH1311
|
2.4
|
18.3
|
0.9
|
O
|
A:FAH1311
|
2.6
|
28.6
|
0.9
|
O
|
A:HOH2369
|
3.1
|
37.5
|
1.0
|
CD2
|
A:HIS274
|
3.3
|
10.0
|
1.0
|
NE2
|
A:HIS274
|
3.4
|
10.9
|
1.0
|
O
|
A:HOH2097
|
3.5
|
40.5
|
1.0
|
OXT
|
A:FAH1311
|
3.5
|
17.2
|
0.9
|
CG
|
A:HIS274
|
3.7
|
9.6
|
1.0
|
CE1
|
A:HIS274
|
3.8
|
10.9
|
1.0
|
O
|
A:HOH2194
|
3.9
|
29.9
|
1.0
|
ND1
|
A:HIS274
|
3.9
|
10.7
|
1.0
|
OD2
|
A:ASP107
|
4.2
|
12.0
|
1.0
|
O
|
A:HOH2166
|
4.2
|
15.5
|
1.0
|
CB
|
A:HIS274
|
4.4
|
10.7
|
1.0
|
O
|
A:HOH2176
|
4.5
|
39.4
|
1.0
|
CE
|
A:MET182
|
4.6
|
14.5
|
1.0
|
O
|
A:HOH2160
|
4.9
|
15.4
|
1.0
|
O
|
A:HOH2095
|
5.0
|
34.5
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 4bau
Go back to
Fluorine Binding Sites List in 4bau
Fluorine binding site 2 out
of 6 in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1312
b:28.4
occ:0.90
|
F
|
A:FAH1312
|
0.0
|
28.4
|
0.9
|
CH3
|
A:FAH1312
|
1.4
|
21.7
|
0.9
|
C
|
A:FAH1312
|
2.4
|
21.6
|
0.9
|
O
|
A:FAH1312
|
2.6
|
25.4
|
0.9
|
CE1
|
A:HIS173
|
3.0
|
26.7
|
1.0
|
O
|
A:HOH2228
|
3.2
|
37.2
|
1.0
|
OXT
|
A:FAH1312
|
3.5
|
26.5
|
0.9
|
ND1
|
A:HIS173
|
3.5
|
30.5
|
1.0
|
CD1
|
A:TYR177
|
3.8
|
16.3
|
1.0
|
CG
|
A:TYR177
|
4.0
|
12.6
|
1.0
|
NE2
|
A:HIS173
|
4.2
|
35.0
|
1.0
|
CB
|
A:TYR177
|
4.2
|
13.3
|
1.0
|
CE1
|
A:TYR177
|
4.4
|
17.0
|
1.0
|
CD2
|
A:TYR177
|
4.7
|
13.6
|
1.0
|
CG
|
A:HIS173
|
4.8
|
20.6
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 4bau
Go back to
Fluorine Binding Sites List in 4bau
Fluorine binding site 3 out
of 6 in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1313
b:25.5
occ:0.90
|
F
|
A:FAH1313
|
0.0
|
25.5
|
0.9
|
CH3
|
A:FAH1313
|
1.4
|
18.1
|
0.9
|
C
|
A:FAH1313
|
2.3
|
18.9
|
0.9
|
O
|
A:FAH1313
|
2.5
|
18.5
|
0.9
|
O
|
A:HOH2371
|
3.3
|
25.8
|
1.0
|
CD2
|
A:TYR189
|
3.3
|
12.9
|
1.0
|
OXT
|
A:FAH1313
|
3.5
|
20.6
|
0.9
|
CD1
|
A:LEU194
|
3.8
|
15.0
|
1.0
|
O
|
A:HOH2372
|
3.9
|
38.6
|
1.0
|
CD2
|
A:LEU194
|
3.9
|
18.1
|
1.0
|
CE2
|
A:TYR189
|
4.0
|
11.3
|
1.0
|
CG
|
A:TYR189
|
4.1
|
10.9
|
1.0
|
CB
|
A:LEU179
|
4.1
|
12.3
|
1.0
|
CB
|
A:TYR189
|
4.3
|
12.9
|
1.0
|
CD1
|
A:LEU179
|
4.4
|
14.2
|
1.0
|
O
|
A:HOH2246
|
4.4
|
18.6
|
1.0
|
CG
|
A:ARG180
|
4.4
|
16.1
|
1.0
|
CG
|
A:LEU194
|
4.4
|
13.7
|
1.0
|
O
|
A:ASP176
|
4.5
|
12.1
|
1.0
|
N
|
A:ARG180
|
4.8
|
11.4
|
1.0
|
CA
|
A:ASP176
|
5.0
|
13.3
|
1.0
|
CG
|
A:LEU179
|
5.0
|
12.0
|
1.0
|
O
|
A:HOH2240
|
5.0
|
18.8
|
1.0
|
OD1
|
A:ASP176
|
5.0
|
14.8
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 4bau
Go back to
Fluorine Binding Sites List in 4bau
Fluorine binding site 4 out
of 6 in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1314
b:45.7
occ:0.80
|
F
|
A:FAH1314
|
0.0
|
45.7
|
0.8
|
CH3
|
A:FAH1314
|
1.4
|
28.3
|
0.8
|
C
|
A:FAH1314
|
2.4
|
29.1
|
0.8
|
O
|
A:HOH2255
|
2.5
|
29.2
|
1.0
|
O
|
A:FAH1314
|
2.8
|
26.4
|
0.8
|
OXT
|
A:FAH1314
|
3.3
|
33.3
|
0.8
|
CD
|
A:ARG199
|
3.4
|
17.9
|
1.0
|
CG
|
A:GLU69
|
3.6
|
15.3
|
1.0
|
NE
|
A:ARG199
|
3.7
|
22.4
|
1.0
|
CD
|
A:GLU69
|
3.9
|
19.2
|
1.0
|
CZ
|
A:ARG199
|
4.1
|
27.0
|
1.0
|
CG
|
A:ARG199
|
4.1
|
14.8
|
1.0
|
NH1
|
A:ARG199
|
4.2
|
23.2
|
1.0
|
OE2
|
A:GLU69
|
4.3
|
24.8
|
1.0
|
OE1
|
A:GLU69
|
4.4
|
25.4
|
1.0
|
OG
|
A:SER196
|
4.4
|
23.4
|
1.0
|
CB
|
A:ARG199
|
4.5
|
11.8
|
1.0
|
O
|
A:HOH2069
|
4.6
|
18.6
|
1.0
|
O
|
A:SER196
|
4.8
|
12.3
|
1.0
|
NH2
|
A:ARG199
|
4.9
|
34.0
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 4bau
Go back to
Fluorine Binding Sites List in 4bau
Fluorine binding site 5 out
of 6 in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1315
b:33.2
occ:0.80
|
F
|
A:FAH1315
|
0.0
|
33.2
|
0.8
|
CH3
|
A:FAH1315
|
1.4
|
21.4
|
0.8
|
C
|
A:FAH1315
|
2.4
|
28.1
|
0.8
|
OXT
|
A:FAH1315
|
2.6
|
28.5
|
0.8
|
O
|
A:HOH2373
|
2.8
|
34.8
|
1.0
|
C
|
A:GLY290
|
3.2
|
14.0
|
1.0
|
O
|
A:GLY290
|
3.4
|
16.1
|
1.0
|
CA
|
A:GLY290
|
3.4
|
17.5
|
1.0
|
O
|
A:HOH2336
|
3.5
|
37.5
|
1.0
|
N
|
A:PHE291
|
3.5
|
12.2
|
1.0
|
O
|
A:FAH1315
|
3.6
|
23.5
|
0.8
|
OG
|
A:SER294
|
3.7
|
27.4
|
0.5
|
O
|
A:HOH2353
|
3.9
|
28.3
|
1.0
|
CA
|
A:PHE291
|
4.1
|
13.0
|
1.0
|
OE2
|
A:GLU266
|
4.5
|
21.8
|
1.0
|
OG
|
A:SER294
|
4.5
|
29.0
|
0.5
|
N
|
A:GLY290
|
4.7
|
12.6
|
1.0
|
O
|
A:HIS287
|
4.7
|
14.1
|
1.0
|
CB
|
A:SER294
|
4.8
|
23.9
|
0.5
|
CB
|
A:SER294
|
4.8
|
24.1
|
0.5
|
CB
|
A:PHE291
|
5.0
|
12.1
|
1.0
|
O
|
A:HOH2302
|
5.0
|
26.1
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 4bau
Go back to
Fluorine Binding Sites List in 4bau
Fluorine binding site 6 out
of 6 in the Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1317
b:30.3
occ:0.90
|
F
|
A:FAH1317
|
0.0
|
30.3
|
0.9
|
CH3
|
A:FAH1317
|
1.3
|
20.0
|
0.9
|
C
|
A:FAH1317
|
2.5
|
28.6
|
0.9
|
O
|
A:FAH1317
|
2.8
|
30.3
|
0.9
|
CD2
|
A:HIS120
|
3.0
|
21.4
|
1.0
|
NE2
|
A:HIS120
|
3.0
|
22.9
|
1.0
|
OD2
|
A:ASP119
|
3.2
|
26.1
|
1.0
|
CB
|
A:ASP119
|
3.4
|
16.6
|
1.0
|
CB
|
A:ALA86
|
3.4
|
12.3
|
1.0
|
OXT
|
A:FAH1317
|
3.5
|
35.9
|
0.9
|
CG
|
A:ASP119
|
3.8
|
16.3
|
1.0
|
O
|
A:ALA83
|
3.8
|
13.2
|
1.0
|
CG
|
A:ARG87
|
4.1
|
20.6
|
1.0
|
N
|
A:ARG87
|
4.1
|
13.1
|
1.0
|
C
|
A:ALA86
|
4.3
|
11.8
|
1.0
|
CG
|
A:HIS120
|
4.3
|
17.8
|
1.0
|
CE1
|
A:HIS120
|
4.4
|
22.6
|
1.0
|
CA
|
A:LEU116
|
4.4
|
11.5
|
1.0
|
CA
|
A:ALA86
|
4.5
|
11.1
|
1.0
|
O
|
A:ARG115
|
4.5
|
11.4
|
1.0
|
CD1
|
A:LEU116
|
4.5
|
12.9
|
1.0
|
CA
|
A:ALA83
|
4.7
|
13.4
|
1.0
|
C
|
A:ALA83
|
4.7
|
12.7
|
1.0
|
CA
|
A:ASP119
|
4.8
|
15.4
|
1.0
|
CA
|
A:ARG87
|
4.8
|
13.9
|
1.0
|
O
|
A:ALA86
|
4.9
|
10.4
|
1.0
|
N
|
A:LEU116
|
4.9
|
11.9
|
1.0
|
O
|
A:LEU116
|
4.9
|
14.1
|
1.0
|
OD1
|
A:ASP119
|
5.0
|
18.9
|
1.0
|
ND1
|
A:HIS120
|
5.0
|
20.6
|
1.0
|
C
|
A:ARG115
|
5.0
|
11.1
|
1.0
|
|
Reference:
J.W.Schmidberger,
R.Schnell,
G.Schneider.
Structure of A Putative Epoxide Hydrolase T131D Mutant From Pseudomonas Aeruginosa, with Bound Mfa To Be Published.
Page generated: Thu Aug 1 00:09:52 2024
|