Fluorine in PDB 5i7f: Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Enzymatic activity of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
All present enzymatic activity of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405:
1.3.1.9;
Protein crystallography data
The structure of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405, PDB code: 5i7f
was solved by
S.Eltschkner,
P.J.Tonge,
C.Kisker,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.17 /
2.70
|
Space group
|
I 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
138.434,
109.775,
269.802,
90.00,
104.51,
90.00
|
R / Rfree (%)
|
19.2 /
22.3
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Fluorine atom in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
(pdb code 5i7f). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the
Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405, PDB code: 5i7f:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 1 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F302
b:48.7
occ:1.00
|
FAD
|
B:68O302
|
0.0
|
48.7
|
1.0
|
CAO
|
B:68O302
|
1.3
|
48.6
|
1.0
|
CAG
|
B:68O302
|
2.4
|
48.4
|
1.0
|
CAR
|
B:68O302
|
2.4
|
48.9
|
1.0
|
HAG
|
B:68O302
|
2.6
|
58.0
|
1.0
|
OAL
|
B:68O302
|
2.6
|
49.3
|
1.0
|
H2D
|
B:NAD301
|
2.6
|
53.6
|
1.0
|
H3D
|
B:NAD301
|
2.9
|
53.3
|
1.0
|
HA3
|
B:GLY93
|
2.9
|
59.8
|
1.0
|
H51N
|
B:NAD301
|
3.3
|
53.4
|
1.0
|
HO2N
|
B:NAD301
|
3.3
|
53.3
|
1.0
|
CB
|
B:ALA196
|
3.3
|
48.3
|
1.0
|
C2D
|
B:NAD301
|
3.3
|
44.7
|
1.0
|
O
|
B:GLY93
|
3.5
|
52.0
|
1.0
|
C3D
|
B:NAD301
|
3.6
|
44.4
|
1.0
|
CAE
|
B:68O302
|
3.6
|
48.5
|
1.0
|
H52A
|
B:NAD301
|
3.6
|
58.8
|
1.0
|
CA
|
B:GLY93
|
3.6
|
49.8
|
1.0
|
CAH
|
B:68O302
|
3.6
|
48.5
|
1.0
|
C
|
B:GLY93
|
3.7
|
51.2
|
1.0
|
O2D
|
B:NAD301
|
3.8
|
44.5
|
1.0
|
HAM
|
B:68O302
|
3.8
|
59.1
|
1.0
|
CAQ
|
B:68O302
|
4.0
|
49.6
|
1.0
|
H
|
B:GLY93
|
4.1
|
59.0
|
1.0
|
CAF
|
B:68O302
|
4.1
|
48.5
|
1.0
|
N
|
B:GLY93
|
4.1
|
49.2
|
1.0
|
C5D
|
B:NAD301
|
4.2
|
44.5
|
1.0
|
O1N
|
B:NAD301
|
4.3
|
55.3
|
1.0
|
C4D
|
B:NAD301
|
4.4
|
44.5
|
1.0
|
H51A
|
B:NAD301
|
4.4
|
58.8
|
1.0
|
HA2
|
B:GLY93
|
4.5
|
59.8
|
1.0
|
HAE
|
B:68O302
|
4.5
|
58.2
|
1.0
|
N
|
B:PHE94
|
4.5
|
51.8
|
1.0
|
C5B
|
B:NAD301
|
4.5
|
49.0
|
1.0
|
HAH
|
B:68O302
|
4.5
|
58.2
|
1.0
|
HAJ
|
B:68O302
|
4.6
|
60.0
|
1.0
|
O3D
|
B:NAD301
|
4.6
|
44.2
|
1.0
|
H52N
|
B:NAD301
|
4.6
|
53.4
|
1.0
|
HA
|
B:PHE94
|
4.7
|
64.2
|
1.0
|
CA
|
B:ALA196
|
4.7
|
50.0
|
1.0
|
OAB
|
B:68O302
|
4.7
|
49.3
|
1.0
|
C1D
|
B:NAD301
|
4.8
|
45.5
|
1.0
|
CAJ
|
B:68O302
|
4.8
|
50.0
|
1.0
|
H2N
|
B:NAD301
|
4.9
|
58.2
|
1.0
|
CAM
|
B:68O302
|
4.9
|
49.4
|
1.0
|
HO3N
|
B:NAD301
|
4.9
|
53.0
|
1.0
|
H
|
B:PHE94
|
5.0
|
62.1
|
1.0
|
O4D
|
B:NAD301
|
5.0
|
44.5
|
1.0
|
|
Fluorine binding site 2 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 2 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F302
b:50.5
occ:1.00
|
FAC
|
B:68O302
|
0.0
|
50.5
|
1.0
|
CAN
|
B:68O302
|
1.3
|
50.1
|
1.0
|
CAJ
|
B:68O302
|
2.3
|
50.0
|
1.0
|
CAP
|
B:68O302
|
2.3
|
49.7
|
1.0
|
HAL
|
B:68O302
|
2.4
|
59.3
|
1.0
|
HAJ
|
B:68O302
|
2.6
|
60.0
|
1.0
|
HE1
|
B:PHE203
|
2.6
|
66.1
|
1.0
|
CAK
|
B:68O302
|
2.8
|
49.4
|
1.0
|
HAB
|
B:68O302
|
2.8
|
59.2
|
1.0
|
CE1
|
B:PHE203
|
3.0
|
55.1
|
1.0
|
HD1
|
B:PHE203
|
3.0
|
68.8
|
1.0
|
O7N
|
B:NAD301
|
3.2
|
50.3
|
1.0
|
CD1
|
B:PHE203
|
3.2
|
57.3
|
1.0
|
CA
|
B:ALA197
|
3.3
|
46.0
|
1.0
|
CAA
|
B:68O302
|
3.3
|
49.4
|
1.0
|
CB
|
B:ALA197
|
3.3
|
45.5
|
1.0
|
CAQ
|
B:68O302
|
3.6
|
49.6
|
1.0
|
C7N
|
B:NAD301
|
3.6
|
50.0
|
1.0
|
CAI
|
B:68O302
|
3.6
|
49.4
|
1.0
|
HAK
|
B:68O302
|
3.8
|
59.3
|
1.0
|
H72N
|
B:NAD301
|
3.9
|
60.1
|
1.0
|
N7N
|
B:NAD301
|
3.9
|
50.1
|
1.0
|
CZ
|
B:PHE203
|
4.0
|
55.4
|
1.0
|
HAA
|
B:68O302
|
4.0
|
59.2
|
1.0
|
HAC
|
B:68O302
|
4.1
|
59.2
|
1.0
|
CAM
|
B:68O302
|
4.1
|
49.4
|
1.0
|
N
|
B:ALA197
|
4.1
|
45.6
|
1.0
|
CG1
|
B:ILE200
|
4.2
|
47.9
|
1.0
|
O
|
B:ILE192
|
4.3
|
55.4
|
1.0
|
HZ
|
B:PHE203
|
4.3
|
66.5
|
1.0
|
O
|
B:ALA197
|
4.3
|
48.5
|
1.0
|
CG
|
B:PHE203
|
4.3
|
59.9
|
1.0
|
C
|
B:ALA197
|
4.4
|
47.8
|
1.0
|
H
|
B:ILE192
|
4.4
|
60.3
|
1.0
|
C3N
|
B:NAD301
|
4.4
|
49.2
|
1.0
|
HAH
|
B:68O302
|
4.5
|
58.2
|
1.0
|
HAI
|
B:68O302
|
4.5
|
59.3
|
1.0
|
HA
|
B:PRO191
|
4.6
|
51.6
|
1.0
|
CB
|
B:ILE200
|
4.6
|
50.1
|
1.0
|
H71N
|
B:NAD301
|
4.6
|
60.1
|
1.0
|
OAL
|
B:68O302
|
4.7
|
49.3
|
1.0
|
HB2
|
B:PHE203
|
4.8
|
75.3
|
1.0
|
C
|
B:ALA196
|
4.8
|
49.4
|
1.0
|
H4N
|
B:NAD301
|
4.9
|
58.9
|
1.0
|
O
|
B:ALA196
|
4.9
|
52.0
|
1.0
|
CE2
|
B:PHE203
|
4.9
|
58.0
|
1.0
|
|
Fluorine binding site 3 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 3 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F302
b:56.8
occ:1.00
|
FAD
|
E:68O302
|
0.0
|
56.8
|
1.0
|
CAO
|
E:68O302
|
1.3
|
56.4
|
1.0
|
CAG
|
E:68O302
|
2.4
|
56.2
|
1.0
|
CAR
|
E:68O302
|
2.4
|
56.3
|
1.0
|
H2D
|
E:NAD301
|
2.5
|
65.5
|
1.0
|
HAG
|
E:68O302
|
2.6
|
67.5
|
1.0
|
OAL
|
E:68O302
|
2.6
|
56.4
|
1.0
|
H3D
|
E:NAD301
|
2.9
|
65.2
|
1.0
|
HA3
|
E:GLY93
|
3.0
|
62.4
|
1.0
|
CB
|
E:ALA196
|
3.1
|
57.3
|
1.0
|
C2D
|
E:NAD301
|
3.2
|
54.5
|
1.0
|
HO2N
|
E:NAD301
|
3.2
|
65.9
|
1.0
|
C3D
|
E:NAD301
|
3.5
|
54.3
|
1.0
|
H52A
|
E:NAD301
|
3.5
|
58.4
|
1.0
|
O2D
|
E:NAD301
|
3.6
|
54.9
|
1.0
|
CAE
|
E:68O302
|
3.6
|
56.2
|
1.0
|
CAH
|
E:68O302
|
3.6
|
56.2
|
1.0
|
O5D
|
E:NAD301
|
3.7
|
55.6
|
1.0
|
CA
|
E:GLY93
|
3.8
|
52.0
|
1.0
|
O
|
E:GLY93
|
3.8
|
55.4
|
1.0
|
C
|
E:GLY93
|
3.9
|
53.9
|
1.0
|
HE2
|
E:MET159
|
3.9
|
69.7
|
1.0
|
CAQ
|
E:68O302
|
4.0
|
56.8
|
1.0
|
HAM
|
E:68O302
|
4.1
|
67.6
|
1.0
|
CAF
|
E:68O302
|
4.1
|
56.2
|
1.0
|
H
|
E:GLY93
|
4.2
|
61.6
|
1.0
|
H51A
|
E:NAD301
|
4.2
|
58.4
|
1.0
|
HO3N
|
E:NAD301
|
4.2
|
65.0
|
1.0
|
N
|
E:GLY93
|
4.3
|
51.3
|
1.0
|
HAJ
|
E:68O302
|
4.4
|
68.6
|
1.0
|
C5B
|
E:NAD301
|
4.4
|
48.6
|
1.0
|
H2N
|
E:NAD301
|
4.4
|
64.0
|
1.0
|
C5D
|
E:NAD301
|
4.5
|
55.5
|
1.0
|
O3D
|
E:NAD301
|
4.5
|
54.1
|
1.0
|
C4D
|
E:NAD301
|
4.5
|
54.7
|
1.0
|
H51N
|
E:NAD301
|
4.5
|
66.6
|
1.0
|
HAE
|
E:68O302
|
4.5
|
67.5
|
1.0
|
HAH
|
E:68O302
|
4.5
|
67.4
|
1.0
|
CA
|
E:ALA196
|
4.5
|
59.6
|
1.0
|
HA2
|
E:GLY93
|
4.6
|
62.4
|
1.0
|
O3
|
E:NAD301
|
4.6
|
67.2
|
1.0
|
C1D
|
E:NAD301
|
4.6
|
54.2
|
1.0
|
CAJ
|
E:68O302
|
4.7
|
57.1
|
1.0
|
PN
|
E:NAD301
|
4.7
|
55.7
|
1.0
|
CE
|
E:MET159
|
4.7
|
58.1
|
1.0
|
HE1
|
E:MET159
|
4.7
|
69.7
|
1.0
|
N
|
E:PHE94
|
4.7
|
54.2
|
1.0
|
O2A
|
E:NAD301
|
4.8
|
67.7
|
1.0
|
O1N
|
E:NAD301
|
4.8
|
56.2
|
1.0
|
OAB
|
E:68O302
|
4.9
|
56.4
|
1.0
|
O4D
|
E:NAD301
|
4.9
|
54.2
|
1.0
|
CAM
|
E:68O302
|
5.0
|
56.6
|
1.0
|
HE3
|
E:MET159
|
5.0
|
69.7
|
1.0
|
HA
|
E:PHE94
|
5.0
|
67.9
|
1.0
|
|
Fluorine binding site 4 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 4 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F302
b:57.3
occ:1.00
|
FAC
|
E:68O302
|
0.0
|
57.3
|
1.0
|
CAN
|
E:68O302
|
1.3
|
57.0
|
1.0
|
HAK
|
E:68O302
|
2.3
|
68.6
|
1.0
|
CAJ
|
E:68O302
|
2.3
|
57.1
|
1.0
|
CAP
|
E:68O302
|
2.3
|
56.9
|
1.0
|
HAJ
|
E:68O302
|
2.6
|
68.6
|
1.0
|
CAK
|
E:68O302
|
2.8
|
57.2
|
1.0
|
HE1
|
E:PHE203
|
2.9
|
69.7
|
1.0
|
CB
|
E:ALA197
|
3.0
|
60.2
|
1.0
|
CA
|
E:ALA197
|
3.0
|
60.3
|
1.0
|
HD1
|
E:PHE203
|
3.1
|
71.1
|
1.0
|
CE1
|
E:PHE203
|
3.2
|
58.1
|
1.0
|
CD1
|
E:PHE203
|
3.3
|
59.2
|
1.0
|
HAL
|
E:68O302
|
3.3
|
68.6
|
1.0
|
O7N
|
E:NAD301
|
3.5
|
52.6
|
1.0
|
CAQ
|
E:68O302
|
3.6
|
56.8
|
1.0
|
CAI
|
E:68O302
|
3.6
|
56.6
|
1.0
|
C7N
|
E:NAD301
|
3.8
|
53.0
|
1.0
|
H72N
|
E:NAD301
|
3.9
|
63.5
|
1.0
|
CD1
|
E:ILE200
|
3.9
|
56.1
|
1.0
|
N
|
E:ALA197
|
3.9
|
60.0
|
1.0
|
N7N
|
E:NAD301
|
4.0
|
52.9
|
1.0
|
CAA
|
E:68O302
|
4.0
|
57.5
|
1.0
|
HAC
|
E:68O302
|
4.0
|
69.0
|
1.0
|
CAM
|
E:68O302
|
4.1
|
56.6
|
1.0
|
O
|
E:ILE192
|
4.1
|
57.1
|
1.0
|
CZ
|
E:PHE203
|
4.1
|
59.2
|
1.0
|
C
|
E:ALA197
|
4.1
|
62.5
|
1.0
|
O
|
E:ALA197
|
4.2
|
62.8
|
1.0
|
CG
|
E:PHE203
|
4.3
|
61.5
|
1.0
|
H
|
E:ILE192
|
4.4
|
65.4
|
1.0
|
HZ
|
E:PHE203
|
4.4
|
71.0
|
1.0
|
HAI
|
E:68O302
|
4.5
|
67.9
|
1.0
|
C
|
E:ALA196
|
4.6
|
59.9
|
1.0
|
H71N
|
E:NAD301
|
4.6
|
63.5
|
1.0
|
HB2
|
E:PHE203
|
4.6
|
75.6
|
1.0
|
HAB
|
E:68O302
|
4.6
|
69.0
|
1.0
|
C3N
|
E:NAD301
|
4.6
|
53.5
|
1.0
|
HA
|
E:PRO191
|
4.7
|
63.6
|
1.0
|
HAH
|
E:68O302
|
4.7
|
67.4
|
1.0
|
OAL
|
E:68O302
|
4.7
|
56.4
|
1.0
|
O
|
E:ALA196
|
4.7
|
60.1
|
1.0
|
HAA
|
E:68O302
|
4.7
|
69.0
|
1.0
|
CG1
|
E:ILE200
|
4.7
|
58.1
|
1.0
|
CB
|
E:ILE200
|
4.9
|
59.9
|
1.0
|
CE2
|
E:PHE203
|
4.9
|
61.4
|
1.0
|
CD2
|
E:PHE203
|
5.0
|
62.6
|
1.0
|
|
Fluorine binding site 5 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 5 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:F302
b:42.8
occ:1.00
|
FAD
|
H:68O302
|
0.0
|
42.8
|
1.0
|
CAO
|
H:68O302
|
1.3
|
42.9
|
1.0
|
CAG
|
H:68O302
|
2.3
|
42.8
|
1.0
|
CAR
|
H:68O302
|
2.3
|
43.3
|
1.0
|
HAG
|
H:68O302
|
2.6
|
51.4
|
1.0
|
OAL
|
H:68O302
|
2.6
|
43.5
|
1.0
|
HA3
|
H:GLY93
|
2.7
|
62.2
|
1.0
|
H2D
|
H:NAD301
|
3.1
|
57.0
|
1.0
|
H3D
|
H:NAD301
|
3.1
|
57.9
|
1.0
|
O
|
H:GLY93
|
3.3
|
53.0
|
1.0
|
C
|
H:GLY93
|
3.3
|
52.6
|
1.0
|
CA
|
H:GLY93
|
3.4
|
51.8
|
1.0
|
HAM
|
H:68O302
|
3.4
|
52.0
|
1.0
|
HE2
|
H:MET159
|
3.5
|
67.6
|
1.0
|
CB
|
H:ALA196
|
3.5
|
48.1
|
1.0
|
CAE
|
H:68O302
|
3.6
|
43.1
|
1.0
|
CAH
|
H:68O302
|
3.6
|
43.4
|
1.0
|
C2D
|
H:NAD301
|
3.7
|
47.5
|
1.0
|
C3D
|
H:NAD301
|
3.8
|
48.2
|
1.0
|
O2D
|
H:NAD301
|
3.9
|
47.7
|
1.0
|
CAQ
|
H:68O302
|
4.0
|
44.1
|
1.0
|
H52A
|
H:NAD301
|
4.0
|
70.4
|
1.0
|
H
|
H:GLY93
|
4.1
|
62.1
|
1.0
|
N
|
H:GLY93
|
4.1
|
51.8
|
1.0
|
CAF
|
H:68O302
|
4.1
|
43.4
|
1.0
|
N
|
H:PHE94
|
4.1
|
53.1
|
1.0
|
HE1
|
H:MET159
|
4.1
|
67.6
|
1.0
|
HA2
|
H:GLY93
|
4.2
|
62.2
|
1.0
|
CE
|
H:MET159
|
4.2
|
56.3
|
1.0
|
HA
|
H:PHE94
|
4.3
|
64.8
|
1.0
|
OAB
|
H:68O302
|
4.4
|
43.3
|
1.0
|
O5D
|
H:NAD301
|
4.5
|
48.3
|
1.0
|
HAE
|
H:68O302
|
4.5
|
51.7
|
1.0
|
HAH
|
H:68O302
|
4.5
|
52.1
|
1.0
|
O3D
|
H:NAD301
|
4.5
|
49.0
|
1.0
|
H51A
|
H:NAD301
|
4.5
|
70.4
|
1.0
|
H
|
H:PHE94
|
4.5
|
63.7
|
1.0
|
HO2N
|
H:NAD301
|
4.6
|
57.2
|
1.0
|
HE3
|
H:MET159
|
4.6
|
67.6
|
1.0
|
CAM
|
H:68O302
|
4.7
|
43.6
|
1.0
|
CA
|
H:PHE94
|
4.8
|
54.0
|
1.0
|
C5B
|
H:NAD301
|
4.8
|
58.7
|
1.0
|
CA
|
H:ALA196
|
4.8
|
49.8
|
1.0
|
HAJ
|
H:68O302
|
4.8
|
53.8
|
1.0
|
HZ1
|
H:LYS163
|
4.9
|
52.4
|
1.0
|
CAJ
|
H:68O302
|
4.9
|
44.8
|
1.0
|
|
Fluorine binding site 6 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 6 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:F302
b:45.8
occ:1.00
|
FAC
|
H:68O302
|
0.0
|
45.8
|
1.0
|
CAN
|
H:68O302
|
1.3
|
45.1
|
1.0
|
CAJ
|
H:68O302
|
2.3
|
44.8
|
1.0
|
CAP
|
H:68O302
|
2.4
|
44.0
|
1.0
|
HE1
|
H:PHE203
|
2.4
|
70.0
|
1.0
|
HAL
|
H:68O302
|
2.5
|
52.0
|
1.0
|
HAJ
|
H:68O302
|
2.6
|
53.8
|
1.0
|
HAA
|
H:68O302
|
2.6
|
51.6
|
1.0
|
CAK
|
H:68O302
|
2.8
|
43.3
|
1.0
|
CE1
|
H:PHE203
|
3.0
|
58.4
|
1.0
|
HD1
|
H:PHE203
|
3.0
|
72.0
|
1.0
|
O7N
|
H:NAD301
|
3.1
|
47.3
|
1.0
|
CAA
|
H:68O302
|
3.2
|
43.0
|
1.0
|
CD1
|
H:PHE203
|
3.3
|
60.0
|
1.0
|
CB
|
H:ALA197
|
3.4
|
53.4
|
1.0
|
CA
|
H:ALA197
|
3.4
|
53.8
|
1.0
|
C7N
|
H:NAD301
|
3.4
|
46.7
|
1.0
|
CAQ
|
H:68O302
|
3.6
|
44.1
|
1.0
|
CAI
|
H:68O302
|
3.6
|
43.4
|
1.0
|
CD1
|
H:ILE200
|
3.6
|
50.5
|
1.0
|
H72N
|
H:NAD301
|
3.7
|
55.9
|
1.0
|
N7N
|
H:NAD301
|
3.7
|
46.6
|
1.0
|
HAK
|
H:68O302
|
3.8
|
52.0
|
1.0
|
HAC
|
H:68O302
|
3.9
|
51.6
|
1.0
|
HAB
|
H:68O302
|
4.0
|
51.6
|
1.0
|
CAM
|
H:68O302
|
4.1
|
43.6
|
1.0
|
CZ
|
H:PHE203
|
4.1
|
58.9
|
1.0
|
O
|
H:ILE192
|
4.2
|
51.7
|
1.0
|
H
|
H:ILE192
|
4.2
|
59.9
|
1.0
|
C3N
|
H:NAD301
|
4.3
|
46.0
|
1.0
|
N
|
H:ALA197
|
4.3
|
52.1
|
1.0
|
HZ
|
H:PHE203
|
4.3
|
70.7
|
1.0
|
HAH
|
H:68O302
|
4.4
|
52.1
|
1.0
|
HA
|
H:PRO191
|
4.4
|
59.8
|
1.0
|
H71N
|
H:NAD301
|
4.4
|
55.9
|
1.0
|
O
|
H:ALA197
|
4.5
|
58.3
|
1.0
|
C
|
H:ALA197
|
4.5
|
56.1
|
1.0
|
HAI
|
H:68O302
|
4.5
|
52.1
|
1.0
|
CG
|
H:PHE203
|
4.6
|
62.2
|
1.0
|
H4N
|
H:NAD301
|
4.7
|
55.0
|
1.0
|
OAL
|
H:68O302
|
4.7
|
43.5
|
1.0
|
CG1
|
H:ILE200
|
4.8
|
52.3
|
1.0
|
HB3
|
H:PRO191
|
4.8
|
62.1
|
1.0
|
C4N
|
H:NAD301
|
4.8
|
45.9
|
1.0
|
N
|
H:ILE192
|
4.9
|
49.9
|
1.0
|
|
Fluorine binding site 7 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 7 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F302
b:51.4
occ:1.00
|
FAD
|
C:68O302
|
0.0
|
51.4
|
1.0
|
CAO
|
C:68O302
|
1.3
|
50.9
|
1.0
|
CAG
|
C:68O302
|
2.3
|
50.9
|
1.0
|
CAR
|
C:68O302
|
2.4
|
50.6
|
1.0
|
HAG
|
C:68O302
|
2.6
|
61.1
|
1.0
|
OAL
|
C:68O302
|
2.6
|
50.1
|
1.0
|
HA3
|
C:GLY93
|
2.7
|
60.7
|
1.0
|
H3D
|
C:NAD301
|
3.0
|
54.2
|
1.0
|
H2D
|
C:NAD301
|
3.0
|
54.4
|
1.0
|
CA
|
C:GLY93
|
3.4
|
50.6
|
1.0
|
O
|
C:GLY93
|
3.4
|
53.2
|
1.0
|
C
|
C:GLY93
|
3.4
|
50.1
|
1.0
|
HE2
|
C:MET159
|
3.4
|
73.5
|
1.0
|
CB
|
C:ALA196
|
3.5
|
51.7
|
1.0
|
C2D
|
C:NAD301
|
3.5
|
45.3
|
1.0
|
CAE
|
C:68O302
|
3.6
|
51.2
|
1.0
|
CAH
|
C:68O302
|
3.6
|
51.0
|
1.0
|
C3D
|
C:NAD301
|
3.7
|
45.2
|
1.0
|
O2D
|
C:NAD301
|
3.7
|
45.3
|
1.0
|
H52A
|
C:NAD301
|
3.8
|
65.4
|
1.0
|
CAQ
|
C:68O302
|
4.0
|
50.0
|
1.0
|
H
|
C:GLY93
|
4.0
|
59.6
|
1.0
|
N
|
C:GLY93
|
4.0
|
49.7
|
1.0
|
CAF
|
C:68O302
|
4.1
|
51.2
|
1.0
|
HA2
|
C:GLY93
|
4.2
|
60.7
|
1.0
|
N
|
C:PHE94
|
4.2
|
49.1
|
1.0
|
HE1
|
C:MET159
|
4.2
|
73.5
|
1.0
|
CE
|
C:MET159
|
4.2
|
61.3
|
1.0
|
O5D
|
C:NAD301
|
4.2
|
44.6
|
1.0
|
H51A
|
C:NAD301
|
4.3
|
65.4
|
1.0
|
HO2N
|
C:NAD301
|
4.4
|
54.4
|
1.0
|
O3D
|
C:NAD301
|
4.4
|
44.9
|
1.0
|
HA
|
C:PHE94
|
4.5
|
62.2
|
1.0
|
OAB
|
C:68O302
|
4.5
|
50.0
|
1.0
|
HAE
|
C:68O302
|
4.5
|
61.4
|
1.0
|
HAH
|
C:68O302
|
4.5
|
61.2
|
1.0
|
H
|
C:PHE94
|
4.6
|
59.0
|
1.0
|
C5B
|
C:NAD301
|
4.6
|
54.5
|
1.0
|
HE3
|
C:MET159
|
4.6
|
73.5
|
1.0
|
HAJ
|
C:68O302
|
4.8
|
59.8
|
1.0
|
CAM
|
C:68O302
|
4.8
|
50.1
|
1.0
|
CA
|
C:ALA196
|
4.8
|
53.0
|
1.0
|
C4D
|
C:NAD301
|
4.8
|
45.3
|
1.0
|
CA
|
C:PHE94
|
4.9
|
51.8
|
1.0
|
CAJ
|
C:68O302
|
4.9
|
49.9
|
1.0
|
HZ1
|
C:LYS163
|
4.9
|
55.8
|
1.0
|
H51N
|
C:NAD301
|
4.9
|
54.0
|
1.0
|
C5D
|
C:NAD301
|
5.0
|
45.0
|
1.0
|
|
Fluorine binding site 8 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 8 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F302
b:49.7
occ:1.00
|
FAC
|
C:68O302
|
0.0
|
49.7
|
1.0
|
CAN
|
C:68O302
|
1.3
|
49.8
|
1.0
|
CAJ
|
C:68O302
|
2.3
|
49.9
|
1.0
|
CAP
|
C:68O302
|
2.3
|
50.1
|
1.0
|
HAL
|
C:68O302
|
2.4
|
60.0
|
1.0
|
HE1
|
C:PHE203
|
2.4
|
62.3
|
1.0
|
HAJ
|
C:68O302
|
2.6
|
59.8
|
1.0
|
CAK
|
C:68O302
|
2.8
|
50.0
|
1.0
|
CE1
|
C:PHE203
|
2.9
|
51.9
|
1.0
|
O7N
|
C:NAD301
|
3.0
|
54.1
|
1.0
|
CB
|
C:ALA197
|
3.0
|
52.9
|
1.0
|
HAC
|
C:68O302
|
3.1
|
60.0
|
1.0
|
HD1
|
C:PHE203
|
3.2
|
63.4
|
1.0
|
CD1
|
C:PHE203
|
3.3
|
52.9
|
1.0
|
CA
|
C:ALA197
|
3.3
|
53.2
|
1.0
|
C7N
|
C:NAD301
|
3.5
|
53.4
|
1.0
|
CAA
|
C:68O302
|
3.5
|
50.0
|
1.0
|
CAQ
|
C:68O302
|
3.5
|
50.0
|
1.0
|
CAI
|
C:68O302
|
3.6
|
50.1
|
1.0
|
CD1
|
C:ILE200
|
3.6
|
51.8
|
1.0
|
HAK
|
C:68O302
|
3.7
|
60.0
|
1.0
|
CZ
|
C:PHE203
|
3.8
|
52.3
|
1.0
|
HZ
|
C:PHE203
|
4.0
|
62.8
|
1.0
|
N7N
|
C:NAD301
|
4.0
|
53.8
|
1.0
|
O
|
C:ILE192
|
4.0
|
53.1
|
1.0
|
H72N
|
C:NAD301
|
4.0
|
64.6
|
1.0
|
CAM
|
C:68O302
|
4.0
|
50.1
|
1.0
|
H
|
C:ILE192
|
4.1
|
60.0
|
1.0
|
N
|
C:ALA197
|
4.2
|
53.0
|
1.0
|
HAB
|
C:68O302
|
4.2
|
60.0
|
1.0
|
HAA
|
C:68O302
|
4.2
|
60.0
|
1.0
|
C3N
|
C:NAD301
|
4.2
|
51.7
|
1.0
|
HA
|
C:PRO191
|
4.4
|
58.7
|
1.0
|
CG
|
C:PHE203
|
4.4
|
54.2
|
1.0
|
C
|
C:ALA197
|
4.4
|
54.7
|
1.0
|
HAI
|
C:68O302
|
4.5
|
60.2
|
1.0
|
O
|
C:ALA197
|
4.5
|
55.0
|
1.0
|
HAH
|
C:68O302
|
4.5
|
61.2
|
1.0
|
H4N
|
C:NAD301
|
4.7
|
61.2
|
1.0
|
OAL
|
C:68O302
|
4.7
|
50.1
|
1.0
|
H71N
|
C:NAD301
|
4.7
|
64.6
|
1.0
|
CE2
|
C:PHE203
|
4.8
|
53.7
|
1.0
|
CG1
|
C:ILE200
|
4.8
|
53.1
|
1.0
|
HB3
|
C:PRO191
|
4.8
|
59.7
|
1.0
|
C4N
|
C:NAD301
|
4.8
|
51.0
|
1.0
|
N
|
C:ILE192
|
4.9
|
50.0
|
1.0
|
C2N
|
C:NAD301
|
5.0
|
51.2
|
1.0
|
HB2
|
C:PHE203
|
5.0
|
66.5
|
1.0
|
|
Fluorine binding site 9 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 9 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F302
b:49.8
occ:1.00
|
FAD
|
A:68O302
|
0.0
|
49.8
|
1.0
|
CAO
|
A:68O302
|
1.3
|
48.7
|
1.0
|
CAR
|
A:68O302
|
2.3
|
47.9
|
1.0
|
CAG
|
A:68O302
|
2.4
|
48.4
|
1.0
|
H2D
|
A:NAD301
|
2.5
|
58.1
|
1.0
|
OAL
|
A:68O302
|
2.6
|
47.2
|
1.0
|
HAG
|
A:68O302
|
2.6
|
58.1
|
1.0
|
HA3
|
A:GLY93
|
2.8
|
61.9
|
1.0
|
H3D
|
A:NAD301
|
2.9
|
58.4
|
1.0
|
HO2N
|
A:NAD301
|
3.1
|
58.2
|
1.0
|
C2D
|
A:NAD301
|
3.2
|
48.5
|
1.0
|
H51N
|
A:NAD301
|
3.2
|
58.0
|
1.0
|
C3D
|
A:NAD301
|
3.5
|
48.6
|
1.0
|
CB
|
A:ALA196
|
3.5
|
49.6
|
1.0
|
HAM
|
A:68O302
|
3.5
|
53.4
|
1.0
|
CA
|
A:GLY93
|
3.6
|
51.6
|
1.0
|
O
|
A:GLY93
|
3.6
|
55.0
|
1.0
|
CAH
|
A:68O302
|
3.6
|
48.2
|
1.0
|
CAE
|
A:68O302
|
3.6
|
48.6
|
1.0
|
O2D
|
A:NAD301
|
3.6
|
48.5
|
1.0
|
H52A
|
A:NAD301
|
3.6
|
58.4
|
1.0
|
C
|
A:GLY93
|
3.7
|
53.5
|
1.0
|
CAQ
|
A:68O302
|
4.0
|
46.0
|
1.0
|
H
|
A:GLY93
|
4.1
|
62.1
|
1.0
|
C5D
|
A:NAD301
|
4.1
|
48.3
|
1.0
|
N
|
A:GLY93
|
4.1
|
51.8
|
1.0
|
CAF
|
A:68O302
|
4.1
|
48.6
|
1.0
|
C4D
|
A:NAD301
|
4.3
|
48.3
|
1.0
|
HA2
|
A:GLY93
|
4.3
|
61.9
|
1.0
|
H52N
|
A:NAD301
|
4.4
|
58.0
|
1.0
|
OAB
|
A:68O302
|
4.5
|
44.5
|
1.0
|
N
|
A:PHE94
|
4.5
|
53.6
|
1.0
|
HAH
|
A:68O302
|
4.5
|
57.8
|
1.0
|
HAE
|
A:68O302
|
4.5
|
58.4
|
1.0
|
O3D
|
A:NAD301
|
4.6
|
49.3
|
1.0
|
C5B
|
A:NAD301
|
4.6
|
48.6
|
1.0
|
H51A
|
A:NAD301
|
4.6
|
58.4
|
1.0
|
C1D
|
A:NAD301
|
4.6
|
48.4
|
1.0
|
O1N
|
A:NAD301
|
4.7
|
57.7
|
1.0
|
CAM
|
A:68O302
|
4.7
|
45.0
|
1.0
|
H2N
|
A:NAD301
|
4.7
|
56.5
|
1.0
|
HA
|
A:PHE94
|
4.7
|
66.7
|
1.0
|
HAJ
|
A:68O302
|
4.8
|
54.4
|
1.0
|
O4D
|
A:NAD301
|
4.8
|
48.3
|
1.0
|
CA
|
A:ALA196
|
4.9
|
51.4
|
1.0
|
CAJ
|
A:68O302
|
4.9
|
45.3
|
1.0
|
H
|
A:PHE94
|
4.9
|
64.3
|
1.0
|
C
|
A:ILE92
|
5.0
|
50.5
|
1.0
|
|
Fluorine binding site 10 out
of 24 in 5i7f
Go back to
Fluorine Binding Sites List in 5i7f
Fluorine binding site 10 out
of 24 in the Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Crystal Structure of B. Pseudomallei Fabi in Complex with Nad and PT405 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F302
b:46.1
occ:1.00
|
FAC
|
A:68O302
|
0.0
|
46.1
|
1.0
|
CAN
|
A:68O302
|
1.3
|
45.3
|
1.0
|
CAJ
|
A:68O302
|
2.3
|
45.3
|
1.0
|
CAP
|
A:68O302
|
2.3
|
44.5
|
1.0
|
HAL
|
A:68O302
|
2.4
|
52.5
|
1.0
|
HE1
|
A:PHE203
|
2.4
|
57.9
|
1.0
|
HAJ
|
A:68O302
|
2.6
|
54.4
|
1.0
|
CAK
|
A:68O302
|
2.8
|
43.7
|
1.0
|
HAC
|
A:68O302
|
2.9
|
52.0
|
1.0
|
HD1
|
A:PHE203
|
2.9
|
59.4
|
1.0
|
CE1
|
A:PHE203
|
2.9
|
48.2
|
1.0
|
CD1
|
A:PHE203
|
3.2
|
49.5
|
1.0
|
CB
|
A:ALA197
|
3.3
|
51.4
|
1.0
|
O7N
|
A:NAD301
|
3.3
|
47.3
|
1.0
|
CA
|
A:ALA197
|
3.3
|
52.2
|
1.0
|
CAA
|
A:68O302
|
3.4
|
43.4
|
1.0
|
CD1
|
A:ILE200
|
3.6
|
47.6
|
1.0
|
CAQ
|
A:68O302
|
3.6
|
46.0
|
1.0
|
CAI
|
A:68O302
|
3.6
|
44.6
|
1.0
|
C7N
|
A:NAD301
|
3.7
|
47.3
|
1.0
|
HAK
|
A:68O302
|
3.7
|
52.5
|
1.0
|
H72N
|
A:NAD301
|
3.8
|
57.0
|
1.0
|
N7N
|
A:NAD301
|
3.9
|
47.5
|
1.0
|
CZ
|
A:PHE203
|
4.0
|
48.9
|
1.0
|
CAM
|
A:68O302
|
4.1
|
45.0
|
1.0
|
HAB
|
A:68O302
|
4.1
|
52.0
|
1.0
|
HAA
|
A:68O302
|
4.1
|
52.0
|
1.0
|
O
|
A:ILE192
|
4.3
|
47.4
|
1.0
|
N
|
A:ALA197
|
4.3
|
51.8
|
1.0
|
O
|
A:ALA197
|
4.3
|
54.9
|
1.0
|
HZ
|
A:PHE203
|
4.3
|
58.6
|
1.0
|
H
|
A:ILE192
|
4.3
|
54.0
|
1.0
|
C
|
A:ALA197
|
4.3
|
53.6
|
1.0
|
HAH
|
A:68O302
|
4.4
|
57.8
|
1.0
|
CG
|
A:PHE203
|
4.4
|
51.4
|
1.0
|
HA
|
A:PRO191
|
4.5
|
52.6
|
1.0
|
HAI
|
A:68O302
|
4.5
|
53.6
|
1.0
|
H71N
|
A:NAD301
|
4.5
|
57.0
|
1.0
|
C3N
|
A:NAD301
|
4.5
|
47.1
|
1.0
|
CG1
|
A:ILE200
|
4.6
|
49.5
|
1.0
|
OAL
|
A:68O302
|
4.7
|
47.2
|
1.0
|
CB
|
A:ILE200
|
4.7
|
50.9
|
1.0
|
HB2
|
A:PHE203
|
4.9
|
63.5
|
1.0
|
HB3
|
A:PRO191
|
4.9
|
53.9
|
1.0
|
C
|
A:ALA196
|
5.0
|
51.3
|
1.0
|
|
Reference:
C.Neckles,
S.Eltschkner,
J.E.Cummings,
M.Hirschbeck,
F.Daryaee,
G.R.Bommineni,
Z.Zhang,
L.Spagnuolo,
W.Yu,
S.Davoodi,
R.A.Slayden,
C.Kisker,
P.J.Tonge.
Rationalizing the Binding Kinetics For the Inhibition of the Burkholderia Pseudomallei FABI1 Enoyl-Acp Reductase. Biochemistry V. 56 1865 2017.
ISSN: ISSN 1520-4995
PubMed: 28225601
DOI: 10.1021/ACS.BIOCHEM.6B01048
Page generated: Thu Aug 1 10:07:59 2024
|