Fluorine in PDB 5mog: Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon

The structure of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon, PDB code: 5mog was solved by A.Brausemann, S.Gemmecker, J.Koschmieder, P.Beyer, O.Einsle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	60.25 / 2.77
Space group	I 4
Cell size a, b, c (Å), α, β, γ (°)	230.210, 230.210, 179.230, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 22.4

The structure of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Fluorine atom in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon (pdb code 5mog). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 15 binding sites of Fluorine where determined in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon, PDB code: 5mog:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ A:F601 b:44.7 occ:1.00 F A:NRF601 0.0 44.7 1.0 C11 A:NRF601 1.3 48.2 1.0 F1 A:NRF601 2.1 48.5 1.0 F2 A:NRF601 2.1 51.4 1.0 C9 A:NRF601 2.4 48.6 1.0 C10 A:NRF601 2.8 48.8 1.0 NH1 A:ARG300 3.6 41.3 1.0 C8 A:NRF601 3.6 47.5 1.0 CD2 A:LEU281 3.9 47.0 1.0 C5 A:NRF601 4.1 48.1 1.0 CG A:LEU281 4.2 45.5 1.0 CG A:MET277 4.2 58.7 1.0 CE A:MET277 4.3 60.4 1.0 CZ A:PHE162 4.3 41.9 1.0 O A:NRF601 4.4 48.3 1.0 CE2 A:PHE162 4.6 44.1 1.0 CB A:ALA297 4.7 48.3 1.0 CD1 A:LEU281 4.7 45.6 1.0 C7 A:NRF601 4.7 47.5 1.0 CZ A:ARG300 4.8 57.7 1.0 CB A:ALA280 4.9 41.9 1.0 C6 A:NRF601 4.9 47.9 1.0 SD A:MET277 5.0 63.9 1.0

Fluorine binding site 2 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ A:F601 b:48.5 occ:1.00 F1 A:NRF601 0.0 48.5 1.0 C11 A:NRF601 1.3 48.2 1.0 F2 A:NRF601 2.1 51.4 1.0 F A:NRF601 2.1 44.7 1.0 C9 A:NRF601 2.3 48.6 1.0 C8 A:NRF601 3.2 47.5 1.0 C10 A:NRF601 3.2 48.8 1.0 CB A:ALA280 3.4 41.9 1.0 CG A:MET277 3.6 58.7 1.0 CE1 A:PHE423 3.6 54.4 1.0 CA A:MET277 3.9 51.2 1.0 CZ A:PHE423 3.9 53.4 1.0 O A:MET277 4.1 53.3 1.0 CB A:MET277 4.2 53.8 1.0 CE A:MET277 4.4 60.4 1.0 C7 A:NRF601 4.4 47.5 1.0 C5 A:NRF601 4.5 48.1 1.0 C A:MET277 4.5 53.3 1.0 CG A:LEU281 4.7 45.5 1.0 CA A:ALA280 4.8 41.4 1.0 CD1 A:PHE423 4.8 53.8 1.0 SD A:MET277 4.8 63.9 1.0 O A:ALA276 4.8 55.2 1.0 N A:MET277 4.9 51.7 1.0 C6 A:NRF601 5.0 47.9 1.0

Fluorine binding site 3 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ A:F601 b:51.4 occ:1.00 F2 A:NRF601 0.0 51.4 1.0 C11 A:NRF601 1.3 48.2 1.0 F1 A:NRF601 2.1 48.5 1.0 F A:NRF601 2.1 44.7 1.0 C9 A:NRF601 2.4 48.6 1.0 C8 A:NRF601 2.8 47.5 1.0 C10 A:NRF601 3.6 48.8 1.0 CZ A:PHE423 3.6 53.4 1.0 CE1 A:PHE423 4.1 54.4 1.0 C7 A:NRF601 4.1 47.5 1.0 CZ A:PHE162 4.2 41.9 1.0 SD A:MET188 4.2 71.8 1.0 CE2 A:PHE162 4.2 44.1 1.0 CE A:MET188 4.2 68.5 1.0 CE A:MET277 4.6 60.4 1.0 CE2 A:PHE423 4.7 55.4 1.0 C5 A:NRF601 4.7 48.1 1.0 NH1 A:ARG300 4.9 41.3 1.0 C6 A:NRF601 4.9 47.9 1.0 CZ A:PHE301 5.0 59.1 1.0 CG A:MET277 5.0 58.7 1.0

Fluorine binding site 4 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ B:F601 b:53.8 occ:1.00 F B:NRF601 0.0 53.8 1.0 C11 B:NRF601 1.3 54.2 1.0 F2 B:NRF601 2.1 58.5 1.0 F1 B:NRF601 2.1 52.9 1.0 C9 B:NRF601 2.4 50.8 1.0 C10 B:NRF601 2.8 50.8 1.0 NH1 B:ARG300 3.6 42.0 1.0 C8 B:NRF601 3.6 49.1 1.0 CD2 B:LEU281 3.9 51.5 1.0 C5 B:NRF601 4.1 49.5 1.0 CG B:LEU281 4.2 50.6 1.0 CG B:MET277 4.2 60.2 1.0 CE B:MET277 4.2 62.1 1.0 CZ B:PHE162 4.3 45.9 1.0 O B:NRF601 4.4 47.4 1.0 CE2 B:PHE162 4.6 47.3 1.0 CB B:ALA297 4.7 52.0 1.0 CD1 B:LEU281 4.7 50.7 1.0 C7 B:NRF601 4.7 48.8 1.0 CZ B:ARG300 4.8 61.3 1.0 CB B:ALA280 4.9 47.1 1.0 C6 B:NRF601 4.9 49.3 1.0 SD B:MET277 5.0 65.2 1.0

Fluorine binding site 5 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ B:F601 b:52.9 occ:1.00 F1 B:NRF601 0.0 52.9 1.0 C11 B:NRF601 1.3 54.2 1.0 F2 B:NRF601 2.1 58.5 1.0 F B:NRF601 2.1 53.8 1.0 C9 B:NRF601 2.3 50.8 1.0 C8 B:NRF601 3.2 49.1 1.0 C10 B:NRF601 3.2 50.8 1.0 CB B:ALA280 3.4 47.1 1.0 CG B:MET277 3.6 60.2 1.0 CE2 B:PHE423 3.6 56.4 1.0 CA B:MET277 3.9 53.2 1.0 CZ B:PHE423 3.9 54.8 1.0 O B:MET277 4.1 55.9 1.0 CB B:MET277 4.2 55.7 1.0 CE B:MET277 4.4 62.1 1.0 C7 B:NRF601 4.4 48.8 1.0 C5 B:NRF601 4.5 49.5 1.0 C B:MET277 4.5 56.3 1.0 CG B:LEU281 4.7 50.6 1.0 CA B:ALA280 4.8 46.4 1.0 CD2 B:PHE423 4.8 53.7 1.0 O B:ALA276 4.8 57.2 1.0 SD B:MET277 4.9 65.2 1.0 N B:MET277 4.9 53.6 1.0 C6 B:NRF601 5.0 49.3 1.0

Fluorine binding site 6 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ B:F601 b:58.5 occ:1.00 F2 B:NRF601 0.0 58.5 1.0 C11 B:NRF601 1.3 54.2 1.0 F B:NRF601 2.1 53.8 1.0 F1 B:NRF601 2.1 52.9 1.0 C9 B:NRF601 2.3 50.8 1.0 C8 B:NRF601 2.8 49.1 1.0 C10 B:NRF601 3.6 50.8 1.0 CZ B:PHE423 3.7 54.8 1.0 CE2 B:PHE423 4.1 56.4 1.0 C7 B:NRF601 4.1 48.8 1.0 CZ B:PHE162 4.1 45.9 1.0 SD B:MET188 4.2 72.6 1.0 CE2 B:PHE162 4.2 47.3 1.0 CE B:MET188 4.2 69.2 1.0 CE B:MET277 4.6 62.1 1.0 C5 B:NRF601 4.7 49.5 1.0 CE1 B:PHE423 4.8 56.0 1.0 NH1 B:ARG300 4.9 42.0 1.0 CZ B:PHE301 4.9 69.2 1.0 C6 B:NRF601 4.9 49.3 1.0 CG B:MET277 5.0 60.2 1.0

Fluorine binding site 7 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ C:F601 b:66.9 occ:1.00 F C:NRF601 0.0 66.9 1.0 C11 C:NRF601 1.3 68.2 1.0 F2 C:NRF601 2.1 68.0 1.0 F1 C:NRF601 2.1 68.8 1.0 C9 C:NRF601 2.4 68.4 1.0 C10 C:NRF601 2.8 68.0 1.0 NH1 C:ARG300 3.6 65.5 1.0 C8 C:NRF601 3.6 67.1 1.0 CD2 C:LEU281 3.9 61.4 1.0 C5 C:NRF601 4.1 66.0 1.0 CG C:LEU281 4.2 58.6 1.0 CG C:MET277 4.2 71.7 1.0 CE C:MET277 4.3 73.0 1.0 CZ C:PHE162 4.3 61.6 1.0 O C:NRF601 4.4 64.1 1.0 CE2 C:PHE162 4.6 63.7 1.0 CD1 C:LEU281 4.7 58.9 1.0 CB C:ALA297 4.7 67.2 1.0 C7 C:NRF601 4.7 66.0 1.0 CZ C:ARG300 4.8 81.7 1.0 CB C:ALA280 4.9 53.4 1.0 C6 C:NRF601 4.9 66.3 1.0 SD C:MET277 5.0 76.4 1.0

Fluorine binding site 8 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ C:F601 b:68.8 occ:1.00 F1 C:NRF601 0.0 68.8 1.0 C11 C:NRF601 1.3 68.2 1.0 F2 C:NRF601 2.1 68.0 1.0 F C:NRF601 2.1 66.9 1.0 C9 C:NRF601 2.4 68.4 1.0 C8 C:NRF601 3.2 67.1 1.0 C10 C:NRF601 3.2 68.0 1.0 CB C:ALA280 3.4 53.4 1.0 CG C:MET277 3.6 71.7 1.0 CE2 C:PHE423 3.6 60.4 1.0 CA C:MET277 3.9 64.6 1.0 CZ C:PHE423 3.9 58.4 1.0 O C:MET277 4.1 67.6 1.0 CB C:MET277 4.2 67.2 1.0 CE C:MET277 4.4 73.0 1.0 C7 C:NRF601 4.5 66.0 1.0 C5 C:NRF601 4.5 66.0 1.0 C C:MET277 4.5 67.6 1.0 CG C:LEU281 4.7 58.6 1.0 CA C:ALA280 4.8 52.7 1.0 CD2 C:PHE423 4.8 57.8 1.0 O C:ALA276 4.8 69.7 1.0 SD C:MET277 4.9 76.4 1.0 N C:MET277 4.9 64.9 1.0 C6 C:NRF601 5.0 66.3 1.0

Fluorine binding site 9 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ C:F601 b:68.0 occ:1.00 F2 C:NRF601 0.0 68.0 1.0 C11 C:NRF601 1.3 68.2 1.0 F1 C:NRF601 2.1 68.8 1.0 F C:NRF601 2.1 66.9 1.0 C9 C:NRF601 2.4 68.4 1.0 C8 C:NRF601 2.8 67.1 1.0 C10 C:NRF601 3.6 68.0 1.0 CZ C:PHE423 3.6 58.4 1.0 CE2 C:PHE423 4.1 60.4 1.0 CZ C:PHE162 4.1 61.6 1.0 C7 C:NRF601 4.2 66.0 1.0 SD C:MET188 4.2 80.8 1.0 CE C:MET188 4.2 77.6 1.0 CE2 C:PHE162 4.2 63.7 1.0 CE C:MET277 4.6 73.0 1.0 C5 C:NRF601 4.7 66.0 1.0 CE1 C:PHE423 4.8 58.9 1.0 NH1 C:ARG300 4.9 65.5 1.0 CZ C:PHE301 4.9 88.2 1.0 C6 C:NRF601 4.9 66.3 1.0

Fluorine binding site 10 out of 15 in the Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Oryza Sativa Phytoene Desaturase Inhibited By Norflurazon within 5.0Å range: probe atom residue distance (Å) B Occ D:F601 b:64.4 occ:1.00 F D:NRF601 0.0 64.4 1.0 C11 D:NRF601 1.3 65.7 1.0 F2 D:NRF601 2.1 65.6 1.0 F1 D:NRF601 2.1 64.9 1.0 C9 D:NRF601 2.3 68.1 1.0 C10 D:NRF601 2.8 67.3 1.0 NH1 D:ARG300 3.6 62.7 1.0 C8 D:NRF601 3.6 68.3 1.0 CD2 D:LEU281 3.9 55.0 1.0 C5 D:NRF601 4.1 66.0 1.0 CG D:LEU281 4.2 54.5 1.0 CG D:MET277 4.2 67.0 1.0 CE D:MET277 4.3 68.8 1.0 CZ D:PHE162 4.3 55.5 1.0 O D:NRF601 4.4 63.1 1.0 CE2 D:PHE162 4.6 57.4 1.0 CB D:ALA297 4.6 58.9 1.0 CD1 D:LEU281 4.7 54.6 1.0 C7 D:NRF601 4.7 67.6 1.0 CZ D:ARG300 4.8 75.7 1.0 CB D:ALA280 4.9 49.7 1.0 C6 D:NRF601 4.9 67.3 1.0 SD D:MET277 5.0 72.1 1.0

A.Brausemann, S.Gemmecker, J.Koschmieder, S.Ghisla, P.Beyer, O.Einsle. Structure of Phytoene Desaturase Provides Insights Into Herbicide Binding and Reaction Mechanisms Involved in Carotene Desaturation. Structure V. 25 1222 2017.
ISSN: ISSN 1878-4186
PubMed: 28669634
DOI: 10.1016/J.STR.2017.06.002