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Fluorine in PDB 6e73: Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal

Protein crystallography data

The structure of Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal, PDB code: 6e73 was solved by K.Chung, L.Saelices, M.R.Sawaya, D.Cascio, D.S.Eisenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.24 / 1.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 43.080, 84.800, 64.240, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal (pdb code 6e73). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal, PDB code: 6e73:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 6e73

Go back to Fluorine Binding Sites List in 6e73
Fluorine binding site 1 out of 4 in the Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:84.7
occ:0.50
FAT A:1FL201 0.0 84.7 0.5
CAN A:1FL201 1.4 84.3 0.5
CAM A:1FL201 2.4 85.4 0.5
CAO A:1FL201 2.4 82.8 0.5
CAP A:1FL201 2.9 79.2 0.5
CAQ A:1FL201 3.2 76.8 0.5
CB A:ALA108 3.6 34.9 1.0
CAH A:1FL201 3.6 84.5 0.5
CAF A:1FL201 3.7 85.6 0.5
CAI A:1FL201 4.0 77.8 0.5
CAG A:1FL201 4.1 85.1 0.5
CAR A:1FL201 4.4 73.6 0.5
FAE A:1FL201 4.8 86.1 0.5
CAJ A:1FL201 5.0 74.2 0.5

Fluorine binding site 2 out of 4 in 6e73

Go back to Fluorine Binding Sites List in 6e73
Fluorine binding site 2 out of 4 in the Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:86.1
occ:0.50
FAE A:1FL201 0.0 86.1 0.5
CAF A:1FL201 1.4 85.6 0.5
CAG A:1FL201 2.4 85.1 0.5
CAM A:1FL201 2.4 85.4 0.5
NZ A:LYS15 2.7 91.2 1.0
CD A:LYS15 3.3 75.5 1.0
CE A:LYS15 3.6 86.3 1.0
CAH A:1FL201 3.6 84.5 0.5
CAN A:1FL201 3.7 84.3 0.5
CAO A:1FL201 4.2 82.8 0.5
FAT A:1FL201 4.8 84.7 0.5
CG A:LYS15 4.8 55.8 1.0

Fluorine binding site 3 out of 4 in 6e73

Go back to Fluorine Binding Sites List in 6e73
Fluorine binding site 3 out of 4 in the Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F201

b:89.3
occ:0.50
FAT B:1FL201 0.0 89.3 0.5
CAN B:1FL201 1.4 87.2 0.5
CAM B:1FL201 2.4 88.8 0.5
CAO B:1FL201 2.4 83.5 0.5
CAP B:1FL201 2.9 79.0 0.5
CAI B:1FL201 3.0 76.7 0.5
CAF B:1FL201 3.6 89.4 0.5
CAH B:1FL201 3.7 86.5 0.5
CAQ B:1FL201 4.0 75.9 0.5
CAG B:1FL201 4.1 88.1 0.5
CAJ B:1FL201 4.1 73.2 0.5
OAD B:1FL201 4.7 64.2 0.5
FAE B:1FL201 4.8 91.8 0.5
CAC B:1FL201 4.9 64.5 0.5
CAR B:1FL201 4.9 72.3 0.5
CAK B:1FL201 5.0 72.9 0.5

Fluorine binding site 4 out of 4 in 6e73

Go back to Fluorine Binding Sites List in 6e73
Fluorine binding site 4 out of 4 in the Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Human Transthyretin VAL30MET Mutant in Complex with Diflunisal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F201

b:91.8
occ:0.50
FAE B:1FL201 0.0 91.8 0.5
CAF B:1FL201 1.4 89.4 0.5
CAM B:1FL201 2.4 88.8 0.5
CAG B:1FL201 2.4 88.1 0.5
NZ B:LYS15 2.7 0.3 1.0
CD B:LYS15 3.2 76.0 1.0
CE B:LYS15 3.4 93.1 1.0
CAH B:1FL201 3.6 86.5 0.5
CAN B:1FL201 3.6 87.2 0.5
CAO B:1FL201 4.1 83.5 0.5
CG B:LYS15 4.6 56.2 1.0
FAT B:1FL201 4.8 89.3 0.5

Reference:

L.Saelices, K.Chung, D.Cascio, M.R.Sawaya, D.S.Eisenberg. Structural Variants of Transthyretin To Be Published.
Page generated: Thu Aug 1 19:26:13 2024

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