Fluorine in PDB 6kee: Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor

Protein crystallography data

The structure of Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor, PDB code: 6kee was solved by S.Xiao, Z.Li, S.Chen, B.Zhou, C.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.27 / 2.12
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.737, 47.703, 79.537, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 27.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor (pdb code 6kee). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor, PDB code: 6kee:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 6kee

Go back to Fluorine Binding Sites List in 6kee
Fluorine binding site 1 out of 2 in the Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:89.9
occ:1.00
F30 A:D7U201 0.0 89.9 1.0
C29 A:D7U201 1.4 69.5 1.0
C28 A:D7U201 2.4 76.5 1.0
C19 A:D7U201 2.4 59.9 1.0
C17 A:D7U201 2.8 49.5 1.0
O18 A:D7U201 2.9 54.8 1.0
CH2 A:TRP81 3.0 45.8 1.0
CG A:PRO82 3.1 39.4 1.0
CB A:PRO82 3.1 39.5 1.0
N16 A:D7U201 3.2 44.9 1.0
CZ3 A:TRP81 3.2 44.8 1.0
C12 A:D7U201 3.4 40.3 1.0
CD1 A:ILE146 3.6 38.9 1.0
C27 A:D7U201 3.6 80.4 1.0
C25 A:D7U201 3.6 64.0 1.0
CZ2 A:TRP81 3.7 45.4 1.0
C7 A:D7U201 3.9 35.9 1.0
C15 A:D7U201 3.9 45.4 1.0
C13 A:D7U201 4.1 37.7 1.0
C26 A:D7U201 4.1 72.8 1.0
CE3 A:TRP81 4.1 43.2 1.0
CA A:PRO82 4.2 34.4 1.0
C14 A:D7U201 4.3 40.8 1.0
CD A:PRO82 4.5 41.2 1.0
C8 A:D7U201 4.5 36.7 1.0
CE2 A:TRP81 4.5 48.4 1.0
N4 A:D7U201 4.6 42.1 1.0
CD2 A:TRP81 4.7 41.4 1.0
SD A:MET149 4.7 48.0 1.0
F31 A:D7U201 4.7 90.6 1.0
N A:PRO82 4.8 37.0 1.0
CG1 A:ILE146 4.9 34.8 1.0
C3 A:D7U201 5.0 44.1 1.0
CE A:MET149 5.0 35.6 1.0

Fluorine binding site 2 out of 2 in 6kee

Go back to Fluorine Binding Sites List in 6kee
Fluorine binding site 2 out of 2 in the Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F201

b:90.6
occ:1.00
F31 A:D7U201 0.0 90.6 1.0
C27 A:D7U201 1.4 80.4 1.0
C28 A:D7U201 2.4 76.5 1.0
C26 A:D7U201 2.4 72.8 1.0
CB A:ASP145 3.0 50.2 1.0
C29 A:D7U201 3.6 69.5 1.0
C25 A:D7U201 3.7 64.0 1.0
OD2 A:ASP145 3.7 64.2 1.0
CG A:ASP145 3.9 60.4 1.0
N A:ILE146 4.1 45.0 1.0
C19 A:D7U201 4.1 59.9 1.0
C A:ASP145 4.2 47.5 1.0
CA A:ASP145 4.2 47.4 1.0
O A:HOH325 4.3 47.6 1.0
SD A:MET149 4.5 48.0 1.0
F30 A:D7U201 4.7 89.9 1.0
O A:ASP145 4.8 43.6 1.0
CA A:ILE146 4.8 44.6 1.0
N A:ASP145 5.0 46.5 1.0

Reference:

S.Xiao, Z.Li, S.Chen, B.Zhou, C.Luo. Crystal Structure of BRD4 BROMODOMAIN1 with An Inhibitor To Be Published.
Page generated: Sun Dec 13 12:55:14 2020

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