Atomistry » Fluorine » PDB 6n4e-6ngp » 6ngh
Atomistry »
  Fluorine »
    PDB 6n4e-6ngp »
      6ngh »

Fluorine in PDB 6ngh: Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine

Enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine

All present enzymatic activity of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine:
1.14.13.39;

Protein crystallography data

The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine, PDB code: 6ngh was solved by H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.07 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.320, 121.680, 164.660, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.6

Other elements in 6ngh:

The structure of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine (pdb code 6ngh). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine, PDB code: 6ngh:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 6ngh

Go back to Fluorine Binding Sites List in 6ngh
Fluorine binding site 1 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:48.3
occ:1.00
 F12 A:KPJ803 0.0 48.3 1.0
C12 A:KPJ803 1.3 54.8 1.0
C13 A:KPJ803 2.4 57.6 1.0
C11 A:KPJ803 2.4 49.5 1.0
F13 A:KPJ803 2.7 62.0 1.0
OH A:TYR593 2.8 30.1 1.0
C09 A:KPJ803 2.9 33.5 1.0
O A:HOH970 3.3 42.9 1.0
CZ A:TYR593 3.6 25.2 1.0
C14 A:KPJ803 3.6 51.8 1.0
C16 A:KPJ803 3.7 55.4 1.0
CB A:PRO570 3.8 15.8 1.0
CE2 A:TYR593 3.9 21.2 1.0
OH A:TYR567 3.9 37.8 1.0
CA A:PRO570 4.0 27.0 1.0
C15 A:KPJ803 4.1 57.3 1.0
CG A:GLN483 4.2 29.1 1.0
CE1 A:TYR567 4.3 28.0 1.0
C08 A:KPJ803 4.4 33.1 1.0
O A:HOH1152 4.4 38.7 1.0
O A:HOH1050 4.5 25.2 1.0
CZ A:TYR567 4.6 28.1 1.0
N A:ALA571 4.7 22.8 1.0
CE1 A:TYR593 4.7 26.8 1.0
C A:PRO570 4.8 26.8 1.0
CB A:GLN483 4.8 21.4 1.0
C06 A:KPJ803 5.0 35.4 1.0

Fluorine binding site 2 out of 4 in 6ngh

Go back to Fluorine Binding Sites List in 6ngh
Fluorine binding site 2 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F803

b:62.0
occ:1.00
 F13 A:KPJ803 0.0 62.0 1.0
C13 A:KPJ803 1.3 57.6 1.0
C12 A:KPJ803 2.4 54.8 1.0
C14 A:KPJ803 2.4 51.8 1.0
F12 A:KPJ803 2.7 48.3 1.0
OH A:TYR567 3.0 37.8 1.0
NE A:ARG486 3.2 43.8 1.0
CD A:ARG486 3.4 44.7 1.0
CZ A:ARG486 3.5 38.4 1.0
O A:HOH970 3.6 42.9 1.0
C15 A:KPJ803 3.6 57.3 1.0
C11 A:KPJ803 3.6 49.5 1.0
CG A:GLN483 3.7 29.1 1.0
NH1 A:ARG486 3.8 28.6 1.0
OE1 A:GLN483 3.9 44.4 1.0
CD A:GLN483 4.0 44.3 1.0
CG A:ARG486 4.0 37.1 1.0
NH2 A:ARG486 4.1 40.5 1.0
C16 A:KPJ803 4.1 55.4 1.0
CB A:GLN483 4.2 21.4 1.0
OH A:TYR593 4.2 30.1 1.0
CZ A:TYR567 4.3 28.1 1.0
CE1 A:TYR567 4.8 28.0 1.0
O A:ILE485 4.8 20.5 1.0
NE2 A:GLN483 4.8 45.8 1.0
C17 A:KPJ803 4.9 58.5 1.0
C09 A:KPJ803 4.9 33.5 1.0

Fluorine binding site 3 out of 4 in 6ngh

Go back to Fluorine Binding Sites List in 6ngh
Fluorine binding site 3 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:74.1
occ:1.00
 F12 B:KPJ803 0.0 74.1 1.0
C12 B:KPJ803 1.3 70.4 1.0
C11 B:KPJ803 2.4 65.2 1.0
C13 B:KPJ803 2.4 68.5 1.0
F13 B:KPJ803 2.7 67.1 1.0
C09 B:KPJ803 2.8 44.1 1.0
OH B:TYR593 3.0 30.2 1.0
O B:HOH934 3.4 37.5 1.0
C14 B:KPJ803 3.6 70.1 1.0
C16 B:KPJ803 3.6 72.5 1.0
CB B:PRO570 3.7 23.3 1.0
CZ B:TYR593 3.7 27.1 1.0
CA B:PRO570 3.9 24.2 1.0
CE2 B:TYR593 4.0 21.9 1.0
OH B:TYR567 4.0 38.8 1.0
CG B:GLN483 4.1 45.1 1.0
C15 B:KPJ803 4.1 74.7 1.0
C08 B:KPJ803 4.3 35.9 1.0
N B:ALA571 4.4 24.7 1.0
CE1 B:TYR567 4.5 34.5 1.0
O B:HOH1070 4.5 47.5 1.0
C B:PRO570 4.5 25.7 1.0
O B:HOH955 4.6 29.8 1.0
CZ B:TYR567 4.7 33.6 1.0
CB B:GLN483 4.7 42.4 1.0
C06 B:KPJ803 4.8 33.1 1.0
CE1 B:TYR593 4.8 26.4 1.0
CD B:GLN483 5.0 58.0 1.0

Fluorine binding site 4 out of 4 in 6ngh

Go back to Fluorine Binding Sites List in 6ngh
Fluorine binding site 4 out of 4 in the Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Human Neuronal Nitric Oxide Synthase R354A/G357D Mutant Heme Domain in Complex with (S)-6-(2,3-Difluoro-5-(2-(1- Methylpyrrolidin-2-Yl)Ethyl)Phenethyl)-4-Methylpyridin-2-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F803

b:67.1
occ:1.00
 F13 B:KPJ803 0.0 67.1 1.0
C13 B:KPJ803 1.3 68.5 1.0
C14 B:KPJ803 2.4 70.1 1.0
C12 B:KPJ803 2.4 70.4 1.0
F12 B:KPJ803 2.7 74.1 1.0
OH B:TYR567 2.9 38.8 1.0
NE B:ARG486 3.5 52.1 1.0
CG B:GLN483 3.5 45.1 1.0
O B:HOH934 3.5 37.5 1.0
C15 B:KPJ803 3.6 74.7 1.0
C11 B:KPJ803 3.6 65.2 1.0
CD B:ARG486 3.7 50.3 1.0
CZ B:ARG486 3.7 45.3 1.0
CD B:GLN483 3.8 58.0 1.0
OE1 B:GLN483 3.8 60.3 1.0
O B:HOH963 3.8 68.6 1.0
CG B:ARG486 4.0 41.8 1.0
CB B:GLN483 4.0 42.4 1.0
NH1 B:ARG486 4.1 31.2 1.0
C16 B:KPJ803 4.1 72.5 1.0
CZ B:TYR567 4.2 33.6 1.0
OH B:TYR593 4.2 30.2 1.0
NH2 B:ARG486 4.3 51.1 1.0
O B:ILE485 4.7 35.5 1.0
NE2 B:GLN483 4.7 56.8 1.0
CE1 B:TYR567 4.7 34.5 1.0
C09 B:KPJ803 4.9 44.1 1.0
C17 B:KPJ803 4.9 78.0 1.0

Reference:

H.T.Do, H.Li, G.Chreifi, T.L.Poulos, R.B.Silverman. Optimization of Blood-Brain Barrier Permeability with Potent and Selective Human Neuronal Nitric Oxide Synthase Inhibitors Having A 2-Aminopyridine Scaffold. J. Med. Chem. V. 62 2690 2019.
ISSN: ISSN 1520-4804
PubMed: 30802056
DOI: 10.1021/ACS.JMEDCHEM.8B02032
Page generated: Thu Aug 1 22:38:48 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy