Fluorine in PDB 6p3v: Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT416

Protein crystallography data

The structure of Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT416, PDB code: 6p3v was solved by A.Punetha, S.Garneau-Tsodikova, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.57 / 2.50
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 174.875, 174.875, 121.450, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 22

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT416 (pdb code 6p3v). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT416, PDB code: 6p3v:

Fluorine binding site 1 out of 1 in 6p3v

Go back to Fluorine Binding Sites List in 6p3v
Fluorine binding site 1 out of 1 in the Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT416


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Eis From Mycobacterium Tuberculosis in Complex with Inhibitor SGT416 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F501

b:35.6
occ:1.00
F07 A:NRV501 0.0 35.6 1.0
C06 A:NRV501 1.4 35.4 1.0
C08 A:NRV501 2.4 35.5 1.0
C05 A:NRV501 2.4 33.5 1.0
CA A:ARG37 3.4 39.3 1.0
CG A:ARG37 3.5 47.1 1.0
CD2 A:LEU63 3.6 33.0 1.0
C09 A:NRV501 3.7 36.5 1.0
CZ3 A:TRP13 3.7 44.5 1.0
N A:ARG37 3.7 37.9 1.0
C04 A:NRV501 3.7 34.0 1.0
CH2 A:TRP13 3.8 43.9 1.0
CB A:ARG37 3.8 43.4 1.0
CG2 A:VAL40 3.8 36.5 1.0
O A:ALA33 4.0 39.6 1.0
C A:TRP36 4.2 35.9 1.0
C03 A:NRV501 4.2 36.8 1.0
O A:TRP36 4.4 37.5 1.0
CD2 A:PHE84 4.6 33.7 1.0
CB A:TRP36 4.6 33.1 1.0
CE2 A:PHE84 4.7 33.4 1.0
C A:ARG37 4.7 37.9 1.0
CG A:LEU63 4.8 32.3 1.0
CD1 A:LEU63 4.8 32.0 1.0
CE3 A:TRP13 4.8 45.5 1.0
CD A:ARG37 4.8 49.9 1.0
CG A:PHE84 4.9 33.5 1.0
CB A:VAL40 4.9 36.1 1.0
CZ2 A:TRP13 5.0 43.7 1.0
C10 A:NRV501 5.0 40.1 1.0

Reference:

K.D.Green, A.Punetha, C.Hou, S.Garneau-Tsodikova, O.V.Tsodikov. Probing the Robustness of Inhibitors of Tuberculosis Aminoglycoside Resistance Enzyme Eis By Mutagenesis. Acs Infect Dis. V. 5 1772 2019.
ISSN: ESSN 2373-8227
PubMed: 31433614
DOI: 10.1021/ACSINFECDIS.9B00228
Page generated: Sun Dec 13 13:05:01 2020

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