Fluorine in PDB 6tug: Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Protein crystallography data
The structure of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp, PDB code: 6tug
was solved by
C.Garcia-Doval,
M.Jinek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.51 /
2.42
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.604,
106.686,
116.793,
90.03,
90.01,
90.10
|
R / Rfree (%)
|
26.4 /
29.2
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Fluorine atom in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
(pdb code 6tug). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the
Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp, PDB code: 6tug:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 1 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:36.1
occ:1.00
|
F
|
A:AF2501
|
0.0
|
36.1
|
1.0
|
C2'
|
A:AF2501
|
1.4
|
34.7
|
1.0
|
H2'
|
A:AF2501
|
2.0
|
41.7
|
1.0
|
C3'
|
A:AF2501
|
2.2
|
40.7
|
1.0
|
H1'
|
A:AF2501
|
2.3
|
41.2
|
1.0
|
HB
|
A:THR139
|
2.3
|
39.5
|
1.0
|
C1'
|
A:AF2501
|
2.4
|
34.2
|
1.0
|
O3'
|
A:AF2501
|
2.5
|
44.5
|
1.0
|
H3'
|
A:AF2501
|
2.6
|
48.9
|
1.0
|
H5'
|
B:AF2501
|
2.7
|
43.6
|
1.0
|
H3'
|
B:AF2501
|
2.8
|
42.2
|
1.0
|
H2'
|
B:AF2501
|
3.1
|
39.6
|
1.0
|
CB
|
A:THR139
|
3.2
|
33.2
|
1.0
|
HG22
|
A:THR139
|
3.3
|
40.3
|
1.0
|
N9
|
A:AF2501
|
3.4
|
31.1
|
1.0
|
C4'
|
A:AF2501
|
3.5
|
39.4
|
1.0
|
O4'
|
A:AF2501
|
3.5
|
35.0
|
1.0
|
H
|
A:THR139
|
3.5
|
41.8
|
1.0
|
N3
|
A:AF2501
|
3.5
|
34.1
|
1.0
|
C3'
|
B:AF2501
|
3.6
|
35.1
|
1.0
|
C5'
|
B:AF2501
|
3.6
|
36.3
|
1.0
|
CG2
|
A:THR139
|
3.6
|
33.9
|
1.0
|
HG21
|
A:THR139
|
3.6
|
40.3
|
1.0
|
C4
|
A:AF2501
|
3.6
|
30.5
|
1.0
|
C2'
|
B:AF2501
|
3.7
|
33.0
|
1.0
|
H5'
|
A:AF2501
|
3.9
|
55.0
|
1.0
|
P
|
B:AF2501
|
3.9
|
43.2
|
1.0
|
O5'
|
B:AF2501
|
4.0
|
41.9
|
1.0
|
N
|
A:THR139
|
4.0
|
34.8
|
1.0
|
CA
|
A:THR139
|
4.1
|
34.7
|
1.0
|
HG1
|
A:THR139
|
4.1
|
46.6
|
1.0
|
C4'
|
B:AF2501
|
4.2
|
33.8
|
1.0
|
OG1
|
A:THR139
|
4.2
|
38.7
|
1.0
|
H4'
|
A:AF2501
|
4.2
|
47.3
|
1.0
|
HA
|
A:THR139
|
4.2
|
41.7
|
1.0
|
H5'A
|
B:AF2501
|
4.2
|
43.6
|
1.0
|
C5'
|
A:AF2501
|
4.3
|
45.8
|
1.0
|
F
|
B:AF2501
|
4.3
|
32.4
|
1.0
|
OP1
|
B:AF2502
|
4.4
|
30.9
|
1.0
|
C8
|
A:AF2501
|
4.5
|
30.3
|
1.0
|
HG23
|
A:THR139
|
4.5
|
40.3
|
1.0
|
C2
|
A:AF2501
|
4.7
|
35.7
|
1.0
|
H5'A
|
A:AF2501
|
4.7
|
55.0
|
1.0
|
HA
|
A:SER138
|
4.8
|
41.1
|
1.0
|
OP1
|
B:AF2501
|
4.8
|
48.7
|
1.0
|
O3'
|
B:AF2501
|
4.8
|
36.2
|
1.0
|
C5
|
A:AF2501
|
4.9
|
31.4
|
1.0
|
H8
|
A:AF2501
|
4.9
|
36.5
|
1.0
|
H4'
|
B:AF2501
|
4.9
|
40.6
|
1.0
|
HG21
|
A:THR111
|
4.9
|
40.0
|
1.0
|
OP2
|
B:AF2501
|
4.9
|
38.7
|
1.0
|
C
|
A:SER138
|
4.9
|
35.1
|
1.0
|
HG23
|
A:THR111
|
4.9
|
40.0
|
1.0
|
H2
|
A:AF2501
|
5.0
|
42.9
|
1.0
|
HG22
|
A:THR111
|
5.0
|
40.0
|
1.0
|
|
Fluorine binding site 2 out
of 24 in 6tug
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Fluorine Binding Sites List in 6tug
Fluorine binding site 2 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F502
b:40.1
occ:1.00
|
F
|
A:AF2502
|
0.0
|
40.1
|
1.0
|
C2'
|
A:AF2502
|
1.4
|
35.8
|
1.0
|
H2'
|
A:AF2502
|
1.9
|
43.0
|
1.0
|
C3'
|
A:AF2502
|
2.2
|
36.3
|
1.0
|
C1'
|
A:AF2502
|
2.5
|
34.8
|
1.0
|
H1'
|
A:AF2502
|
2.5
|
41.9
|
1.0
|
O3'
|
A:AF2502
|
2.5
|
36.5
|
1.0
|
H3'
|
A:AF2502
|
2.6
|
43.6
|
1.0
|
HG21
|
B:THR139
|
3.0
|
47.7
|
1.0
|
N9
|
A:AF2502
|
3.2
|
33.8
|
1.0
|
OP2
|
A:AF2503
|
3.5
|
38.1
|
1.0
|
C4'
|
A:AF2502
|
3.5
|
39.0
|
1.0
|
O4'
|
A:AF2502
|
3.5
|
36.3
|
1.0
|
P
|
A:AF2503
|
3.6
|
37.1
|
1.0
|
C4
|
A:AF2502
|
3.7
|
32.9
|
1.0
|
CG2
|
B:THR139
|
3.9
|
39.7
|
1.0
|
HG22
|
B:THR139
|
3.9
|
47.7
|
1.0
|
H8
|
A:AF2503
|
3.9
|
37.7
|
1.0
|
C8
|
A:AF2502
|
4.0
|
33.7
|
1.0
|
N3
|
A:AF2502
|
4.0
|
34.4
|
1.0
|
F
|
B:AF2503
|
4.1
|
41.6
|
1.0
|
H4'
|
A:AF2502
|
4.1
|
46.9
|
1.0
|
HB
|
B:THR139
|
4.1
|
51.0
|
1.0
|
H5'
|
A:AF2502
|
4.2
|
51.5
|
1.0
|
OP1
|
A:AF2503
|
4.3
|
36.3
|
1.0
|
H8
|
A:AF2502
|
4.3
|
40.6
|
1.0
|
HG1
|
B:THR139
|
4.5
|
58.7
|
1.0
|
C5'
|
A:AF2502
|
4.5
|
42.8
|
1.0
|
CB
|
B:THR139
|
4.5
|
42.4
|
1.0
|
HG23
|
B:THR139
|
4.6
|
47.7
|
1.0
|
C8
|
A:AF2503
|
4.6
|
31.4
|
1.0
|
C5
|
A:AF2502
|
4.8
|
33.2
|
1.0
|
N7
|
A:AF2502
|
4.9
|
33.8
|
1.0
|
O5'
|
A:AF2503
|
4.9
|
41.7
|
1.0
|
OG1
|
B:THR139
|
5.0
|
48.9
|
1.0
|
N7
|
A:AF2503
|
5.0
|
31.0
|
1.0
|
|
Fluorine binding site 3 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 3 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F503
b:34.4
occ:1.00
|
F
|
A:AF2503
|
0.0
|
34.4
|
1.0
|
C2'
|
A:AF2503
|
1.4
|
36.2
|
1.0
|
H2'
|
A:AF2503
|
2.0
|
43.5
|
1.0
|
H
|
A:ASN10
|
2.0
|
45.6
|
1.0
|
C3'
|
A:AF2503
|
2.2
|
41.3
|
1.0
|
C1'
|
A:AF2503
|
2.5
|
36.2
|
1.0
|
O3'
|
A:AF2503
|
2.5
|
43.4
|
1.0
|
HB2
|
A:ASN10
|
2.5
|
55.7
|
1.0
|
H1'
|
A:AF2503
|
2.5
|
43.5
|
1.0
|
H3'
|
A:AF2503
|
2.6
|
49.6
|
1.0
|
OP2
|
A:AF2501
|
2.9
|
48.6
|
1.0
|
N
|
A:ASN10
|
2.9
|
38.0
|
1.0
|
P
|
A:AF2501
|
3.1
|
47.3
|
1.0
|
HD22
|
A:ASN10
|
3.2
|
64.3
|
1.0
|
CB
|
A:ASN10
|
3.2
|
46.4
|
1.0
|
N9
|
A:AF2503
|
3.2
|
31.6
|
1.0
|
CG
|
A:ASN10
|
3.3
|
49.7
|
1.0
|
ND2
|
A:ASN10
|
3.3
|
53.6
|
1.0
|
O4'
|
A:AF2503
|
3.5
|
42.4
|
1.0
|
C4'
|
A:AF2503
|
3.5
|
40.8
|
1.0
|
HA3
|
A:GLY9
|
3.6
|
43.0
|
1.0
|
OP1
|
A:AF2501
|
3.6
|
51.4
|
1.0
|
CA
|
A:ASN10
|
3.6
|
43.9
|
1.0
|
C4
|
A:AF2503
|
3.7
|
33.4
|
1.0
|
HA2
|
A:GLY9
|
3.8
|
43.0
|
1.0
|
HD21
|
A:ASN10
|
3.8
|
64.3
|
1.0
|
C
|
A:GLY9
|
3.9
|
36.5
|
1.0
|
N3
|
A:AF2503
|
4.0
|
38.3
|
1.0
|
CA
|
A:GLY9
|
4.0
|
35.8
|
1.0
|
OD1
|
A:ASN10
|
4.0
|
49.1
|
1.0
|
HB3
|
A:ASN10
|
4.0
|
55.7
|
1.0
|
C8
|
A:AF2503
|
4.1
|
31.4
|
1.0
|
H
|
A:THR11
|
4.1
|
51.9
|
1.0
|
H4'
|
A:AF2503
|
4.1
|
49.0
|
1.0
|
HD11
|
A:ILE42
|
4.2
|
36.5
|
1.0
|
O5'
|
A:AF2503
|
4.3
|
41.7
|
1.0
|
HA
|
A:ASN10
|
4.3
|
52.8
|
1.0
|
H8
|
A:AF2503
|
4.3
|
37.7
|
1.0
|
C5'
|
A:AF2503
|
4.4
|
40.5
|
1.0
|
O5'
|
A:AF2501
|
4.6
|
49.5
|
1.0
|
HD12
|
A:ILE42
|
4.6
|
36.5
|
1.0
|
C
|
A:ASN10
|
4.7
|
45.4
|
1.0
|
N
|
A:THR11
|
4.7
|
43.2
|
1.0
|
O
|
A:GLY113
|
4.7
|
50.3
|
1.0
|
C5
|
A:AF2503
|
4.8
|
32.3
|
1.0
|
H5'A
|
A:AF2503
|
4.8
|
48.7
|
1.0
|
CD1
|
A:ILE42
|
4.9
|
30.4
|
1.0
|
N7
|
A:AF2503
|
4.9
|
31.0
|
1.0
|
HG23
|
A:THR11
|
4.9
|
57.6
|
1.0
|
HA2
|
A:GLY113
|
5.0
|
58.0
|
1.0
|
|
Fluorine binding site 4 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 4 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:32.4
occ:1.00
|
F
|
B:AF2501
|
0.0
|
32.4
|
1.0
|
C2'
|
B:AF2501
|
1.4
|
33.0
|
1.0
|
H2'
|
B:AF2501
|
1.9
|
39.6
|
1.0
|
C3'
|
B:AF2501
|
2.2
|
35.1
|
1.0
|
C1'
|
B:AF2501
|
2.5
|
32.4
|
1.0
|
O3'
|
B:AF2501
|
2.5
|
36.2
|
1.0
|
H1'
|
B:AF2501
|
2.6
|
39.0
|
1.0
|
H3'
|
B:AF2501
|
2.6
|
42.2
|
1.0
|
HG21
|
A:THR139
|
2.9
|
40.3
|
1.0
|
N9
|
B:AF2501
|
3.2
|
28.7
|
1.0
|
OP2
|
B:AF2502
|
3.5
|
40.2
|
1.0
|
C4'
|
B:AF2501
|
3.5
|
33.8
|
1.0
|
O4'
|
B:AF2501
|
3.5
|
32.3
|
1.0
|
P
|
B:AF2502
|
3.6
|
36.6
|
1.0
|
CG2
|
A:THR139
|
3.8
|
33.9
|
1.0
|
C4
|
B:AF2501
|
3.8
|
29.7
|
1.0
|
HG22
|
A:THR139
|
3.8
|
40.3
|
1.0
|
H8
|
B:AF2502
|
3.8
|
42.6
|
1.0
|
C8
|
B:AF2501
|
4.0
|
30.9
|
1.0
|
N3
|
B:AF2501
|
4.1
|
33.8
|
1.0
|
H4'
|
B:AF2501
|
4.1
|
40.6
|
1.0
|
H5'
|
B:AF2501
|
4.2
|
43.6
|
1.0
|
H8
|
B:AF2501
|
4.2
|
37.1
|
1.0
|
OP1
|
B:AF2502
|
4.2
|
30.9
|
1.0
|
HG23
|
A:THR139
|
4.3
|
40.3
|
1.0
|
F
|
A:AF2501
|
4.3
|
36.1
|
1.0
|
C5'
|
B:AF2501
|
4.4
|
36.3
|
1.0
|
HG1
|
A:THR139
|
4.5
|
46.6
|
1.0
|
HB
|
A:THR139
|
4.6
|
39.5
|
1.0
|
C8
|
B:AF2502
|
4.6
|
35.4
|
1.0
|
CB
|
A:THR139
|
4.7
|
33.2
|
1.0
|
C5
|
B:AF2501
|
4.8
|
30.5
|
1.0
|
N7
|
B:AF2501
|
4.9
|
28.5
|
1.0
|
O5'
|
B:AF2502
|
4.9
|
34.8
|
1.0
|
|
Fluorine binding site 5 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 5 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F502
b:40.5
occ:1.00
|
F
|
B:AF2502
|
0.0
|
40.5
|
1.0
|
C2'
|
B:AF2502
|
1.4
|
43.8
|
1.0
|
H2'
|
B:AF2502
|
1.9
|
52.6
|
1.0
|
C3'
|
B:AF2502
|
2.2
|
42.5
|
1.0
|
H
|
B:ASN10
|
2.4
|
47.5
|
1.0
|
C1'
|
B:AF2502
|
2.5
|
43.4
|
1.0
|
O3'
|
B:AF2502
|
2.5
|
43.2
|
1.0
|
H1'
|
B:AF2502
|
2.6
|
52.1
|
1.0
|
H3'
|
B:AF2502
|
2.6
|
51.0
|
1.0
|
HB2
|
B:ASN10
|
2.6
|
39.8
|
1.0
|
HD22
|
B:ASN10
|
2.8
|
44.1
|
1.0
|
OP1
|
B:AF2503
|
3.0
|
41.7
|
1.0
|
P
|
B:AF2503
|
3.1
|
42.5
|
1.0
|
N9
|
B:AF2502
|
3.2
|
37.0
|
1.0
|
N
|
B:ASN10
|
3.2
|
39.5
|
1.0
|
ND2
|
B:ASN10
|
3.3
|
36.7
|
1.0
|
CB
|
B:ASN10
|
3.4
|
33.1
|
1.0
|
O4'
|
B:AF2502
|
3.5
|
46.8
|
1.0
|
C4'
|
B:AF2502
|
3.5
|
42.7
|
1.0
|
OP2
|
B:AF2503
|
3.6
|
51.9
|
1.0
|
CG
|
B:ASN10
|
3.7
|
33.2
|
1.0
|
C4
|
B:AF2502
|
3.9
|
35.2
|
1.0
|
HD21
|
B:ASN10
|
3.9
|
44.1
|
1.0
|
CA
|
B:ASN10
|
3.9
|
30.8
|
1.0
|
C8
|
B:AF2502
|
4.0
|
35.4
|
1.0
|
HA3
|
B:GLY9
|
4.0
|
45.3
|
1.0
|
H
|
B:THR11
|
4.0
|
54.4
|
1.0
|
H8
|
B:AF2502
|
4.2
|
42.6
|
1.0
|
O5'
|
B:AF2502
|
4.2
|
34.8
|
1.0
|
H4'
|
B:AF2502
|
4.2
|
51.3
|
1.0
|
N3
|
B:AF2502
|
4.2
|
33.1
|
1.0
|
HA2
|
B:GLY9
|
4.2
|
45.3
|
1.0
|
HB3
|
B:ASN10
|
4.2
|
39.8
|
1.0
|
C
|
B:GLY9
|
4.3
|
37.9
|
1.0
|
CA
|
B:GLY9
|
4.4
|
37.7
|
1.0
|
C5'
|
B:AF2502
|
4.4
|
38.7
|
1.0
|
HD11
|
B:ILE42
|
4.6
|
46.9
|
1.0
|
HA
|
B:ASN10
|
4.7
|
36.5
|
1.0
|
N
|
B:THR11
|
4.7
|
45.2
|
1.0
|
O5'
|
B:AF2503
|
4.7
|
38.5
|
1.0
|
OD1
|
B:ASN10
|
4.7
|
39.3
|
1.0
|
C
|
B:ASN10
|
4.8
|
38.9
|
1.0
|
HG1
|
B:THR11
|
4.8
|
52.2
|
1.0
|
HA2
|
B:GLY113
|
4.8
|
43.3
|
1.0
|
C5
|
B:AF2502
|
4.8
|
35.5
|
1.0
|
N7
|
B:AF2502
|
4.9
|
35.3
|
1.0
|
H5'A
|
B:AF2502
|
4.9
|
46.5
|
1.0
|
H
|
B:GLY113
|
5.0
|
44.1
|
1.0
|
|
Fluorine binding site 6 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 6 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F503
b:41.6
occ:1.00
|
F
|
B:AF2503
|
0.0
|
41.6
|
1.0
|
C2'
|
B:AF2503
|
1.4
|
37.6
|
1.0
|
H2'
|
B:AF2503
|
2.0
|
45.2
|
1.0
|
C3'
|
B:AF2503
|
2.2
|
36.0
|
1.0
|
H1'
|
B:AF2503
|
2.3
|
48.4
|
1.0
|
C1'
|
B:AF2503
|
2.4
|
40.3
|
1.0
|
HB
|
B:THR139
|
2.5
|
51.0
|
1.0
|
H3'
|
B:AF2503
|
2.5
|
43.3
|
1.0
|
O3'
|
B:AF2503
|
2.6
|
38.9
|
1.0
|
H3'
|
A:AF2502
|
2.6
|
43.6
|
1.0
|
H5'
|
A:AF2502
|
2.8
|
51.5
|
1.0
|
H2'
|
A:AF2502
|
2.9
|
43.0
|
1.0
|
N9
|
B:AF2503
|
3.3
|
31.3
|
1.0
|
C3'
|
A:AF2502
|
3.4
|
36.3
|
1.0
|
CB
|
B:THR139
|
3.5
|
42.4
|
1.0
|
C4'
|
B:AF2503
|
3.5
|
37.5
|
1.0
|
C2'
|
A:AF2502
|
3.5
|
35.8
|
1.0
|
O4'
|
B:AF2503
|
3.5
|
39.4
|
1.0
|
N3
|
B:AF2503
|
3.6
|
39.1
|
1.0
|
C5'
|
A:AF2502
|
3.6
|
42.8
|
1.0
|
C4
|
B:AF2503
|
3.7
|
42.5
|
1.0
|
H
|
B:THR139
|
3.7
|
48.9
|
1.0
|
O5'
|
A:AF2502
|
3.9
|
43.5
|
1.0
|
P
|
A:AF2502
|
3.9
|
40.9
|
1.0
|
H5'
|
B:AF2503
|
4.0
|
46.7
|
1.0
|
F
|
A:AF2502
|
4.1
|
40.1
|
1.0
|
N
|
B:THR139
|
4.1
|
40.7
|
1.0
|
C4'
|
A:AF2502
|
4.1
|
39.0
|
1.0
|
HG21
|
B:THR139
|
4.1
|
47.7
|
1.0
|
HG22
|
B:THR139
|
4.2
|
47.7
|
1.0
|
OG1
|
B:THR139
|
4.2
|
48.9
|
1.0
|
CG2
|
B:THR139
|
4.2
|
39.7
|
1.0
|
H4'
|
B:AF2503
|
4.2
|
45.0
|
1.0
|
CA
|
B:THR139
|
4.2
|
43.4
|
1.0
|
HG1
|
B:THR139
|
4.2
|
58.7
|
1.0
|
HA
|
B:THR139
|
4.2
|
52.1
|
1.0
|
OP1
|
A:AF2503
|
4.3
|
36.3
|
1.0
|
C5'
|
B:AF2503
|
4.3
|
38.9
|
1.0
|
H5'A
|
A:AF2502
|
4.4
|
51.5
|
1.0
|
C8
|
B:AF2503
|
4.5
|
42.0
|
1.0
|
O3'
|
A:AF2502
|
4.7
|
36.5
|
1.0
|
C2
|
B:AF2503
|
4.8
|
42.0
|
1.0
|
H5'A
|
B:AF2503
|
4.8
|
46.7
|
1.0
|
OP1
|
A:AF2502
|
4.8
|
45.6
|
1.0
|
H4'
|
A:AF2502
|
4.9
|
46.9
|
1.0
|
H8
|
B:AF2503
|
4.9
|
50.5
|
1.0
|
C5
|
B:AF2503
|
4.9
|
46.4
|
1.0
|
OP2
|
A:AF2502
|
4.9
|
41.3
|
1.0
|
O4'
|
A:AF2502
|
4.9
|
36.3
|
1.0
|
C1'
|
A:AF2502
|
4.9
|
34.8
|
1.0
|
HA
|
B:SER138
|
4.9
|
43.9
|
1.0
|
HG23
|
B:THR111
|
5.0
|
46.6
|
1.0
|
C
|
B:SER138
|
5.0
|
37.0
|
1.0
|
|
Fluorine binding site 7 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 7 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F501
b:40.9
occ:1.00
|
F
|
C:AF2501
|
0.0
|
40.9
|
1.0
|
C2'
|
C:AF2501
|
1.4
|
38.5
|
1.0
|
H2'
|
C:AF2501
|
2.0
|
46.2
|
1.0
|
C3'
|
C:AF2501
|
2.2
|
38.3
|
1.0
|
H1'
|
C:AF2501
|
2.3
|
46.4
|
1.0
|
HB
|
C:THR139
|
2.4
|
37.5
|
1.0
|
C1'
|
C:AF2501
|
2.4
|
38.6
|
1.0
|
H3'
|
C:AF2501
|
2.6
|
46.1
|
1.0
|
O3'
|
C:AF2501
|
2.6
|
41.7
|
1.0
|
H3'
|
D:AF2501
|
2.7
|
44.2
|
1.0
|
H5'
|
D:AF2501
|
2.7
|
46.9
|
1.0
|
H2'
|
D:AF2501
|
3.1
|
49.9
|
1.0
|
CB
|
C:THR139
|
3.4
|
31.2
|
1.0
|
N9
|
C:AF2501
|
3.4
|
33.7
|
1.0
|
N3
|
C:AF2501
|
3.5
|
37.2
|
1.0
|
C4'
|
C:AF2501
|
3.5
|
42.3
|
1.0
|
C3'
|
D:AF2501
|
3.5
|
36.8
|
1.0
|
O4'
|
C:AF2501
|
3.5
|
41.4
|
1.0
|
C5'
|
D:AF2501
|
3.6
|
39.0
|
1.0
|
C4
|
C:AF2501
|
3.6
|
33.6
|
1.0
|
H
|
C:THR139
|
3.6
|
40.1
|
1.0
|
C2'
|
D:AF2501
|
3.7
|
41.5
|
1.0
|
HG21
|
C:THR139
|
3.8
|
35.8
|
1.0
|
H5'
|
C:AF2501
|
3.9
|
54.0
|
1.0
|
HG22
|
C:THR139
|
3.9
|
35.8
|
1.0
|
CG2
|
C:THR139
|
3.9
|
29.7
|
1.0
|
P
|
D:AF2501
|
3.9
|
45.5
|
1.0
|
O5'
|
D:AF2501
|
4.0
|
40.7
|
1.0
|
HG1
|
C:THR139
|
4.1
|
43.8
|
1.0
|
N
|
C:THR139
|
4.1
|
33.4
|
1.0
|
C4'
|
D:AF2501
|
4.2
|
35.8
|
1.0
|
OG1
|
C:THR139
|
4.2
|
36.4
|
1.0
|
CA
|
C:THR139
|
4.2
|
34.1
|
1.0
|
H4'
|
C:AF2501
|
4.2
|
50.8
|
1.0
|
F
|
D:AF2501
|
4.2
|
49.1
|
1.0
|
C5'
|
C:AF2501
|
4.3
|
44.9
|
1.0
|
HA
|
C:THR139
|
4.3
|
41.0
|
1.0
|
H5'A
|
D:AF2501
|
4.3
|
46.9
|
1.0
|
OP1
|
D:AF2502
|
4.4
|
36.4
|
1.0
|
C8
|
C:AF2501
|
4.6
|
32.9
|
1.0
|
C2
|
C:AF2501
|
4.6
|
39.8
|
1.0
|
O3'
|
D:AF2501
|
4.8
|
36.3
|
1.0
|
OP1
|
D:AF2501
|
4.8
|
51.5
|
1.0
|
H2
|
C:AF2501
|
4.9
|
47.9
|
1.0
|
H4'
|
D:AF2501
|
4.9
|
43.0
|
1.0
|
H5'A
|
C:AF2501
|
4.9
|
54.0
|
1.0
|
C5
|
C:AF2501
|
4.9
|
34.4
|
1.0
|
HG23
|
C:THR139
|
4.9
|
35.8
|
1.0
|
HG23
|
C:THR111
|
5.0
|
37.9
|
1.0
|
OP2
|
D:AF2501
|
5.0
|
48.0
|
1.0
|
H8
|
C:AF2501
|
5.0
|
39.5
|
1.0
|
HG21
|
C:THR111
|
5.0
|
37.9
|
1.0
|
|
Fluorine binding site 8 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 8 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F502
b:40.4
occ:1.00
|
F
|
C:AF2502
|
0.0
|
40.4
|
1.0
|
C2'
|
C:AF2502
|
1.4
|
40.7
|
1.0
|
H2'
|
C:AF2502
|
1.9
|
48.9
|
1.0
|
C3'
|
C:AF2502
|
2.2
|
41.0
|
1.0
|
C1'
|
C:AF2502
|
2.5
|
39.6
|
1.0
|
O3'
|
C:AF2502
|
2.5
|
43.0
|
1.0
|
H1'
|
C:AF2502
|
2.6
|
47.6
|
1.0
|
H3'
|
C:AF2502
|
2.6
|
49.2
|
1.0
|
HG21
|
D:THR139
|
3.1
|
45.2
|
1.0
|
N9
|
C:AF2502
|
3.1
|
35.7
|
1.0
|
C4'
|
C:AF2502
|
3.5
|
42.0
|
1.0
|
O4'
|
C:AF2502
|
3.5
|
41.0
|
1.0
|
P
|
C:AF2503
|
3.6
|
41.5
|
1.0
|
OP2
|
C:AF2503
|
3.7
|
41.6
|
1.0
|
C4
|
C:AF2502
|
3.7
|
35.9
|
1.0
|
H8
|
C:AF2503
|
3.9
|
50.6
|
1.0
|
C8
|
C:AF2502
|
4.0
|
35.2
|
1.0
|
CG2
|
D:THR139
|
4.0
|
37.6
|
1.0
|
N3
|
C:AF2502
|
4.0
|
38.4
|
1.0
|
H4'
|
C:AF2502
|
4.1
|
50.5
|
1.0
|
HB
|
D:THR139
|
4.2
|
46.3
|
1.0
|
H8
|
C:AF2502
|
4.2
|
42.3
|
1.0
|
H5'
|
C:AF2502
|
4.2
|
55.6
|
1.0
|
HG22
|
D:THR139
|
4.3
|
45.2
|
1.0
|
OP1
|
C:AF2503
|
4.3
|
40.4
|
1.0
|
F
|
D:AF2503
|
4.4
|
47.4
|
1.0
|
HG1
|
D:THR139
|
4.4
|
51.5
|
1.0
|
C5'
|
C:AF2502
|
4.5
|
46.3
|
1.0
|
CB
|
D:THR139
|
4.6
|
38.5
|
1.0
|
HG23
|
D:THR139
|
4.6
|
45.2
|
1.0
|
C8
|
C:AF2503
|
4.6
|
42.1
|
1.0
|
C5
|
C:AF2502
|
4.7
|
37.8
|
1.0
|
N7
|
C:AF2502
|
4.8
|
36.0
|
1.0
|
N7
|
C:AF2503
|
4.9
|
42.2
|
1.0
|
O5'
|
C:AF2503
|
5.0
|
42.8
|
1.0
|
|
Fluorine binding site 9 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 9 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:F503
b:41.9
occ:1.00
|
F
|
C:AF2503
|
0.0
|
41.9
|
1.0
|
C2'
|
C:AF2503
|
1.4
|
43.3
|
1.0
|
H2'
|
C:AF2503
|
2.0
|
52.0
|
1.0
|
H
|
C:ASN10
|
2.2
|
52.8
|
1.0
|
C3'
|
C:AF2503
|
2.3
|
44.1
|
1.0
|
C1'
|
C:AF2503
|
2.5
|
45.7
|
1.0
|
O3'
|
C:AF2503
|
2.6
|
45.4
|
1.0
|
H1'
|
C:AF2503
|
2.6
|
54.9
|
1.0
|
H3'
|
C:AF2503
|
2.6
|
53.0
|
1.0
|
HB2
|
C:ASN10
|
2.7
|
61.2
|
1.0
|
OP2
|
C:AF2501
|
2.8
|
42.7
|
1.0
|
N
|
C:ASN10
|
3.0
|
44.0
|
1.0
|
P
|
C:AF2501
|
3.0
|
45.2
|
1.0
|
N9
|
C:AF2503
|
3.2
|
42.6
|
1.0
|
HD22
|
C:ASN10
|
3.3
|
64.8
|
1.0
|
CB
|
C:ASN10
|
3.4
|
50.9
|
1.0
|
OP1
|
C:AF2501
|
3.4
|
49.1
|
1.0
|
ND2
|
C:ASN10
|
3.5
|
54.0
|
1.0
|
CG
|
C:ASN10
|
3.5
|
51.3
|
1.0
|
O4'
|
C:AF2503
|
3.5
|
48.2
|
1.0
|
C4'
|
C:AF2503
|
3.5
|
44.5
|
1.0
|
HA3
|
C:GLY9
|
3.6
|
45.5
|
1.0
|
CA
|
C:ASN10
|
3.8
|
48.9
|
1.0
|
C4
|
C:AF2503
|
3.8
|
42.2
|
1.0
|
HA2
|
C:GLY9
|
3.8
|
45.5
|
1.0
|
C
|
C:GLY9
|
3.9
|
42.1
|
1.0
|
HD21
|
C:ASN10
|
3.9
|
64.8
|
1.0
|
CA
|
C:GLY9
|
4.0
|
37.9
|
1.0
|
C8
|
C:AF2503
|
4.0
|
42.1
|
1.0
|
N3
|
C:AF2503
|
4.1
|
41.8
|
1.0
|
H4'
|
C:AF2503
|
4.1
|
53.5
|
1.0
|
O5'
|
C:AF2503
|
4.2
|
42.8
|
1.0
|
H8
|
C:AF2503
|
4.2
|
50.6
|
1.0
|
HB3
|
C:ASN10
|
4.2
|
61.2
|
1.0
|
H
|
C:THR11
|
4.3
|
60.7
|
1.0
|
OD1
|
C:ASN10
|
4.3
|
48.3
|
1.0
|
HA
|
C:ASN10
|
4.4
|
58.7
|
1.0
|
C5'
|
C:AF2503
|
4.4
|
42.5
|
1.0
|
HD11
|
C:ILE42
|
4.6
|
47.4
|
1.0
|
O5'
|
C:AF2501
|
4.6
|
47.1
|
1.0
|
O
|
C:GLY113
|
4.7
|
34.0
|
1.0
|
HA2
|
C:GLY113
|
4.7
|
36.2
|
1.0
|
C5
|
C:AF2503
|
4.8
|
42.5
|
1.0
|
C
|
C:ASN10
|
4.8
|
51.8
|
1.0
|
N
|
C:THR11
|
4.8
|
50.5
|
1.0
|
H5'A
|
C:AF2503
|
4.9
|
51.1
|
1.0
|
H
|
C:GLY113
|
4.9
|
36.4
|
1.0
|
N7
|
C:AF2503
|
4.9
|
42.2
|
1.0
|
|
Fluorine binding site 10 out
of 24 in 6tug
Go back to
Fluorine Binding Sites List in 6tug
Fluorine binding site 10 out
of 24 in the Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Enterococcus Italicus CSM6 Bound to Cyclic Hexa-2'-Fluoro-Hexa-Damp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:F501
b:49.1
occ:1.00
|
F
|
D:AF2501
|
0.0
|
49.1
|
1.0
|
C2'
|
D:AF2501
|
1.4
|
41.5
|
1.0
|
H2'
|
D:AF2501
|
1.9
|
49.9
|
1.0
|
C3'
|
D:AF2501
|
2.2
|
36.8
|
1.0
|
C1'
|
D:AF2501
|
2.5
|
34.8
|
1.0
|
O3'
|
D:AF2501
|
2.5
|
36.3
|
1.0
|
H1'
|
D:AF2501
|
2.5
|
41.8
|
1.0
|
H3'
|
D:AF2501
|
2.6
|
44.2
|
1.0
|
HG21
|
C:THR139
|
3.0
|
35.8
|
1.0
|
N9
|
D:AF2501
|
3.2
|
30.7
|
1.0
|
OP2
|
D:AF2502
|
3.3
|
41.2
|
1.0
|
P
|
D:AF2502
|
3.5
|
37.6
|
1.0
|
C4'
|
D:AF2501
|
3.5
|
35.8
|
1.0
|
O4'
|
D:AF2501
|
3.5
|
35.2
|
1.0
|
C4
|
D:AF2501
|
3.8
|
30.0
|
1.0
|
H8
|
D:AF2502
|
3.9
|
43.7
|
1.0
|
CG2
|
C:THR139
|
4.0
|
29.7
|
1.0
|
C8
|
D:AF2501
|
4.0
|
29.2
|
1.0
|
N3
|
D:AF2501
|
4.1
|
33.8
|
1.0
|
H4'
|
D:AF2501
|
4.1
|
43.0
|
1.0
|
OP1
|
D:AF2502
|
4.1
|
36.4
|
1.0
|
HG22
|
C:THR139
|
4.1
|
35.8
|
1.0
|
H5'
|
D:AF2501
|
4.2
|
46.9
|
1.0
|
H8
|
D:AF2501
|
4.2
|
35.2
|
1.0
|
F
|
C:AF2501
|
4.2
|
40.9
|
1.0
|
HB
|
C:THR139
|
4.4
|
37.5
|
1.0
|
C5'
|
D:AF2501
|
4.4
|
39.0
|
1.0
|
HG1
|
C:THR139
|
4.5
|
43.8
|
1.0
|
HG23
|
C:THR139
|
4.5
|
35.8
|
1.0
|
C8
|
D:AF2502
|
4.7
|
36.4
|
1.0
|
CB
|
C:THR139
|
4.7
|
31.2
|
1.0
|
C5
|
D:AF2501
|
4.8
|
29.7
|
1.0
|
N7
|
D:AF2501
|
4.9
|
29.9
|
1.0
|
O5'
|
D:AF2502
|
4.9
|
40.9
|
1.0
|
|
Reference:
C.Garcia-Doval,
F.Schwede,
C.Berk,
J.T.Rostol,
O.Niewoehner,
O.Tejero,
J.Hall,
L.A.Marraffini,
M.Jinek.
Activation and Self-Inactivation Mechanisms of the Cyclic Oligoadenylate-Dependent Crispr Ribonuclease CSM6 To Be Published.
Page generated: Fri Aug 2 02:16:33 2024
|