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Fluorine in PDB 6xg6: Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3

Other elements in 6xg6:

The structure of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Potassium (K) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 (pdb code 6xg6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3, PDB code: 6xg6:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 6xg6

Go back to Fluorine Binding Sites List in 6xg6
Fluorine binding site 1 out of 6 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F902

b:40.4
occ:1.00
 F1 A:BEF902 0.0 40.4 1.0
BE A:BEF902 1.5 40.4 1.0
MG A:MG903 2.0 39.0 1.0
F3 A:BEF902 2.5 40.4 1.0
F2 A:BEF902 2.6 40.4 1.0
O1B A:ADP901 2.6 51.2 1.0
OE1 A:GLU115 3.1 38.7 1.0
O3A A:ADP901 3.1 51.2 1.0
PB A:ADP901 3.3 51.2 1.0
CA A:GLY204 3.3 39.7 1.0
N A:GLY204 3.4 39.7 1.0
O3B A:ADP901 3.5 51.2 1.0
NH1 A:ARG402 3.6 37.3 1.0
OD1 A:ASN119 3.9 41.6 1.0
NE A:ARG402 4.1 37.3 1.0
CD A:GLU115 4.1 38.7 1.0
O1A A:ADP901 4.2 51.2 1.0
CZ A:ARG402 4.2 37.3 1.0
PA A:ADP901 4.3 51.2 1.0
CA A:GLY199 4.3 40.0 1.0
OE2 A:GLU115 4.5 38.7 1.0
C A:GLY204 4.6 39.7 1.0
C A:VAL203 4.6 36.5 1.0
O2B A:ADP901 4.7 51.2 1.0
N A:VAL203 4.7 36.5 1.0
N A:GLY202 4.8 41.9 1.0
CG A:ASN119 4.9 41.6 1.0
N A:GLN200 4.9 37.1 1.0

Fluorine binding site 2 out of 6 in 6xg6

Go back to Fluorine Binding Sites List in 6xg6
Fluorine binding site 2 out of 6 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F902

b:40.4
occ:1.00
 F2 A:BEF902 0.0 40.4 1.0
BE A:BEF902 1.6 40.4 1.0
F3 A:BEF902 2.5 40.4 1.0
F1 A:BEF902 2.6 40.4 1.0
N A:GLY204 3.2 39.7 1.0
CA A:GLY204 3.5 39.7 1.0
CD2 A:PHE201 3.6 36.3 1.0
CG2 A:VAL203 3.6 36.5 1.0
CB A:PHE201 3.7 36.3 1.0
OH A:TYR106 3.7 40.0 1.0
NE A:ARG402 3.8 37.3 1.0
OE1 A:GLU115 3.8 38.7 1.0
C A:VAL203 3.8 36.5 1.0
OE2 A:GLU115 3.9 38.7 1.0
N A:VAL203 3.9 36.5 1.0
NH1 A:ARG402 4.0 37.3 1.0
O1B A:ADP901 4.0 51.2 1.0
CG A:PHE201 4.1 36.3 1.0
CD A:GLU115 4.2 38.7 1.0
CA A:VAL203 4.3 36.5 1.0
CZ A:ARG402 4.3 37.3 1.0
O A:VAL203 4.4 36.5 1.0
O3A A:ADP901 4.5 51.2 1.0
N A:GLY202 4.5 41.9 1.0
CB A:VAL203 4.6 36.5 1.0
O A:LEU400 4.6 36.0 1.0
CA A:PHE201 4.6 36.3 1.0
MG A:MG903 4.6 39.0 1.0
N A:PHE201 4.6 36.3 1.0
CE2 A:PHE201 4.7 36.3 1.0
CG A:ARG402 4.7 37.3 1.0
CD A:ARG402 4.8 37.3 1.0
C A:PHE201 4.8 36.3 1.0
PB A:ADP901 5.0 51.2 1.0

Fluorine binding site 3 out of 6 in 6xg6

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Fluorine binding site 3 out of 6 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F902

b:40.4
occ:1.00
 F3 A:BEF902 0.0 40.4 1.0
BE A:BEF902 1.5 40.4 1.0
O1B A:ADP901 2.3 51.2 1.0
NH1 A:ARG402 2.4 37.3 1.0
F2 A:BEF902 2.5 40.4 1.0
F1 A:BEF902 2.5 40.4 1.0
N A:PHE201 2.7 36.3 1.0
N A:GLN200 3.2 37.1 1.0
CB A:PHE201 3.3 36.3 1.0
CD2 A:PHE201 3.3 36.3 1.0
CA A:PHE201 3.4 36.3 1.0
CZ A:ARG402 3.5 37.3 1.0
N A:GLY202 3.5 41.9 1.0
CG A:PHE201 3.6 36.3 1.0
C A:GLN200 3.7 37.1 1.0
NE A:ARG402 3.7 37.3 1.0
PB A:ADP901 3.7 51.2 1.0
C A:PHE201 3.9 36.3 1.0
CA A:GLY199 3.9 40.0 1.0
CA A:GLN200 4.0 37.1 1.0
C A:GLY199 4.0 40.0 1.0
MG A:MG903 4.0 39.0 1.0
O3A A:ADP901 4.1 51.2 1.0
CE2 A:PHE201 4.3 36.3 1.0
CG A:GLN200 4.3 37.1 1.0
N A:VAL203 4.6 36.5 1.0
O3B A:ADP901 4.6 51.2 1.0
CA A:GLY202 4.6 41.9 1.0
NH2 A:ARG402 4.7 37.3 1.0
N A:GLY204 4.7 39.7 1.0
O2B A:ADP901 4.7 51.2 1.0
CB A:GLN200 4.8 37.1 1.0
CD1 A:PHE201 4.8 36.3 1.0
O A:GLN200 4.9 37.1 1.0
O A:ILE198 4.9 37.4 1.0

Fluorine binding site 4 out of 6 in 6xg6

Go back to Fluorine Binding Sites List in 6xg6
Fluorine binding site 4 out of 6 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F902

b:37.9
occ:1.00
 F1 B:BEF902 0.0 37.9 1.0
BE B:BEF902 1.5 37.9 1.0
O3B B:ADP901 2.4 51.2 1.0
F3 B:BEF902 2.5 37.9 1.0
N B:PHE201 2.5 38.2 1.0
F2 B:BEF902 2.6 37.9 1.0
N B:GLN200 2.8 38.5 1.0
NH2 B:ARG402 3.0 37.7 1.0
N B:GLY202 3.2 40.1 1.0
O1B B:ADP901 3.2 51.2 1.0
PB B:ADP901 3.3 51.2 1.0
CA B:PHE201 3.3 38.2 1.0
C B:GLN200 3.5 38.5 1.0
CB B:PHE201 3.5 38.2 1.0
CA B:GLY199 3.5 38.6 1.0
C B:GLY199 3.5 38.6 1.0
CD2 B:PHE201 3.6 38.2 1.0
CA B:GLN200 3.7 38.5 1.0
C B:PHE201 3.7 38.2 1.0
CG B:PHE201 3.8 38.2 1.0
O3A B:ADP901 3.9 51.2 1.0
CZ B:ARG402 4.1 37.7 1.0
CA B:GLY202 4.3 40.1 1.0
NE B:ARG402 4.4 37.7 1.0
N B:VAL203 4.5 35.6 1.0
CG B:GLN200 4.6 38.5 1.0
N B:GLY204 4.6 36.9 1.0
CE2 B:PHE201 4.6 38.2 1.0
MG B:MG903 4.6 42.7 1.0
O2B B:ADP901 4.6 51.2 1.0
O B:GLN200 4.6 38.5 1.0
O B:GLY199 4.7 38.6 1.0
CB B:GLN200 4.7 38.5 1.0
O B:ILE198 4.7 39.6 1.0
N B:GLY199 4.8 38.6 1.0
C B:GLY202 4.9 40.1 1.0
O B:PHE201 4.9 38.2 1.0

Fluorine binding site 5 out of 6 in 6xg6

Go back to Fluorine Binding Sites List in 6xg6
Fluorine binding site 5 out of 6 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F902

b:37.9
occ:1.00
 F2 B:BEF902 0.0 37.9 1.0
BE B:BEF902 1.6 37.9 1.0
O1B B:ADP901 2.3 51.2 1.0
F3 B:BEF902 2.5 37.9 1.0
MG B:MG903 2.5 42.7 1.0
F1 B:BEF902 2.6 37.9 1.0
OE2 B:GLU115 2.8 36.4 1.0
NH2 B:ARG402 3.4 37.7 1.0
PB B:ADP901 3.4 51.2 1.0
CA B:GLY204 3.5 36.9 1.0
O3B B:ADP901 3.7 51.2 1.0
N B:GLY204 3.8 36.9 1.0
OD1 B:ASN119 3.9 39.1 1.0
NE B:ARG402 3.9 37.7 1.0
O3A B:ADP901 3.9 51.2 1.0
CA B:GLY199 4.0 38.6 1.0
CD B:GLU115 4.0 36.4 1.0
CZ B:ARG402 4.1 37.7 1.0
O1A B:ADP901 4.2 51.2 1.0
N B:GLN200 4.7 38.5 1.0
C B:GLY204 4.7 36.9 1.0
O2B B:ADP901 4.7 51.2 1.0
PA B:ADP901 4.8 51.2 1.0
OE1 B:GLU115 4.8 36.4 1.0
N B:GLY199 4.9 38.6 1.0
CG B:ASN119 4.9 39.1 1.0
C B:GLY199 4.9 38.6 1.0
CD2 B:PHE201 4.9 38.2 1.0
C B:VAL203 5.0 35.6 1.0

Fluorine binding site 6 out of 6 in 6xg6

Go back to Fluorine Binding Sites List in 6xg6
Fluorine binding site 6 out of 6 in the Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Full-Length Human Mitochondrial HSP90 (TRAP1) with Adp-BEF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F902

b:37.9
occ:1.00
 F3 B:BEF902 0.0 37.9 1.0
BE B:BEF902 1.5 37.9 1.0
F2 B:BEF902 2.5 37.9 1.0
F1 B:BEF902 2.5 37.9 1.0
N B:GLY204 2.9 36.9 1.0
CA B:GLY204 3.3 36.9 1.0
CD2 B:PHE201 3.5 38.2 1.0
CB B:PHE201 3.6 38.2 1.0
C B:VAL203 3.6 35.6 1.0
N B:VAL203 3.6 35.6 1.0
OE2 B:GLU115 3.7 36.4 1.0
CG2 B:VAL203 3.8 35.6 1.0
N B:GLY202 4.0 40.1 1.0
CG B:PHE201 4.0 38.2 1.0
O1B B:ADP901 4.1 51.2 1.0
CA B:VAL203 4.1 35.6 1.0
OH B:TYR106 4.1 38.8 1.0
NE B:ARG402 4.2 37.7 1.0
NH2 B:ARG402 4.2 37.7 1.0
O3B B:ADP901 4.3 51.2 1.0
MG B:MG903 4.3 42.7 1.0
N B:PHE201 4.3 38.2 1.0
CA B:PHE201 4.3 38.2 1.0
O B:VAL203 4.3 35.6 1.0
O3A B:ADP901 4.4 51.2 1.0
C B:PHE201 4.4 38.2 1.0
PB B:ADP901 4.5 51.2 1.0
CB B:VAL203 4.6 35.6 1.0
C B:GLY202 4.6 40.1 1.0
CE2 B:PHE201 4.7 38.2 1.0
CZ B:ARG402 4.7 37.7 1.0
CD B:GLU115 4.8 36.4 1.0
C B:GLY204 4.8 36.9 1.0
CA B:GLY202 4.8 40.1 1.0

Reference:

F.Wang, Y.Liu, Z.Yu, S.Li, S.Feng, Y.Cheng, D.A.Agard. General and Robust Covalently Linked Graphene Oxide Affinity Grids For High-Resolution Cryo-Em. Proc.Natl.Acad.Sci.Usa V. 117 24269 2020.
ISSN: ESSN 1091-6490
PubMed: 32913054
DOI: 10.1073/PNAS.2009707117
Page generated: Tue Jul 15 17:24:49 2025

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