Atomistry » Fluorine » PDB 7bj6-7ckn » 7bss
Atomistry »
  Fluorine »
    PDB 7bj6-7ckn »
      7bss »

Fluorine in PDB 7bss: Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State

Other elements in 7bss:

The structure of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State (pdb code 7bss). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State, PDB code: 7bss:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7bss

Go back to Fluorine Binding Sites List in 7bss
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:61.6
occ:1.00
F1 A:ALF1101 0.0 61.6 1.0
AL A:ALF1101 1.8 61.6 1.0
N A:GLY675 2.5 74.6 1.0
F4 A:ALF1101 2.5 61.6 1.0
F3 A:ALF1101 2.5 61.6 1.0
OD2 A:ASP409 2.8 57.8 1.0
CA A:GLY675 3.2 74.6 1.0
C A:THR674 3.5 70.3 1.0
NZ A:LYS795 3.6 66.7 1.0
F2 A:ALF1101 3.6 61.6 1.0
CG A:ASP409 3.7 57.8 1.0
OG1 A:THR674 3.7 70.3 1.0
CA A:THR674 3.7 70.3 1.0
OG1 A:THR411 3.8 63.5 1.0
C A:GLY675 3.9 74.6 1.0
OD1 A:ASP409 4.0 57.8 1.0
N A:ASP676 4.2 86.0 1.0
CB A:THR674 4.3 70.3 1.0
CE A:LYS795 4.5 66.7 1.0
O A:LEU673 4.5 57.7 1.0
O A:THR674 4.6 70.3 1.0
O A:GLY675 4.7 74.6 1.0
N A:THR411 4.7 63.5 1.0
N A:LYS410 4.8 66.4 1.0
N A:THR674 4.9 70.3 1.0
CB A:ASP409 4.9 57.8 1.0

Fluorine binding site 2 out of 4 in 7bss

Go back to Fluorine Binding Sites List in 7bss
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:61.6
occ:1.00
F2 A:ALF1101 0.0 61.6 1.0
AL A:ALF1101 1.8 61.6 1.0
MG A:MG1102 1.8 61.1 1.0
OD1 A:ASP409 2.3 57.8 1.0
F4 A:ALF1101 2.5 61.6 1.0
F3 A:ALF1101 2.6 61.6 1.0
CG A:ASP409 3.0 57.8 1.0
O A:THR411 3.0 63.5 1.0
OD2 A:ASP409 3.1 57.8 1.0
OD1 A:ASP816 3.5 58.6 1.0
F1 A:ALF1101 3.6 61.6 1.0
OG1 A:THR411 3.6 63.5 1.0
OD2 A:ASP820 3.7 61.2 1.0
C A:THR411 4.2 63.5 1.0
OD1 A:ASN819 4.3 64.7 1.0
N A:GLY817 4.4 62.6 1.0
CB A:ASP409 4.4 57.8 1.0
CG A:ASP820 4.4 61.2 1.0
OE2 A:GLU837 4.5 77.2 1.0
OD1 A:ASP820 4.5 61.2 1.0
CA A:GLY817 4.5 62.6 1.0
CG A:ASP816 4.7 58.6 1.0
CB A:THR411 4.7 63.5 1.0
CG A:ASN819 4.8 64.7 1.0
N A:THR411 4.8 63.5 1.0
CA A:THR411 4.8 63.5 1.0
ND2 A:ASN819 4.9 64.7 1.0
NZ A:LYS795 5.0 66.7 1.0

Fluorine binding site 3 out of 4 in 7bss

Go back to Fluorine Binding Sites List in 7bss
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:61.6
occ:1.00
F3 A:ALF1101 0.0 61.6 1.0
AL A:ALF1101 1.8 61.6 1.0
F1 A:ALF1101 2.5 61.6 1.0
F2 A:ALF1101 2.6 61.6 1.0
OD2 A:ASP409 3.0 57.8 1.0
ND2 A:ASN819 3.1 64.7 1.0
CG A:ASN819 3.2 64.7 1.0
NZ A:LYS795 3.2 66.7 1.0
OD1 A:ASN819 3.4 64.7 1.0
F4 A:ALF1101 3.6 61.6 1.0
OD1 A:ASP820 3.7 61.2 1.0
CG A:ASP409 3.9 57.8 1.0
CB A:ASN819 3.9 64.7 1.0
OD1 A:ASP409 4.0 57.8 1.0
OD2 A:ASP820 4.3 61.2 1.0
CG A:ASP820 4.4 61.2 1.0
MG A:MG1102 4.4 61.1 1.0
N A:GLY675 4.5 74.6 1.0
CE A:LYS795 4.6 66.7 1.0
CA A:GLY675 4.7 74.6 1.0
OG1 A:THR411 4.7 63.5 1.0
CA A:ASN819 5.0 64.7 1.0

Fluorine binding site 4 out of 4 in 7bss

Go back to Fluorine Binding Sites List in 7bss
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of A Human ATP11C-CDC50A Flippase in E1ALF State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1101

b:61.6
occ:1.00
F4 A:ALF1101 0.0 61.6 1.0
AL A:ALF1101 1.8 61.6 1.0
OG1 A:THR411 2.1 63.5 1.0
OD1 A:ASP409 2.4 57.8 1.0
F2 A:ALF1101 2.5 61.6 1.0
F1 A:ALF1101 2.5 61.6 1.0
N A:THR411 2.7 63.5 1.0
O A:THR411 2.7 63.5 1.0
CG A:ASP409 2.9 57.8 1.0
OD2 A:ASP409 2.9 57.8 1.0
CB A:THR411 3.1 63.5 1.0
CA A:THR411 3.1 63.5 1.0
MG A:MG1102 3.2 61.1 1.0
C A:THR411 3.3 63.5 1.0
F3 A:ALF1101 3.6 61.6 1.0
C A:LYS410 3.7 66.4 1.0
N A:LYS410 3.7 66.4 1.0
C A:ASP409 4.0 57.8 1.0
CG2 A:THR411 4.0 63.5 1.0
CA A:LYS410 4.1 66.4 1.0
CB A:ASP409 4.2 57.8 1.0
O A:ASP409 4.3 57.8 1.0
OG1 A:THR674 4.4 70.3 1.0
CB A:LYS410 4.5 66.4 1.0
CA A:ASP409 4.5 57.8 1.0
N A:GLY412 4.5 63.8 1.0
O A:LYS410 4.6 66.4 1.0
N A:GLY675 4.7 74.6 1.0

Reference:

H.Nakanishi, T.Nishizawa, K.Segawa, O.Nureki, Y.Fujiyoshi, S.Nagata, K.Abe. Transport Cycle of Plasma Membrane Flippase ATP11C By Cryo-Em. Cell Rep V. 32 08208 2020.
ISSN: ESSN 2211-1247
PubMed: 32997992
DOI: 10.1016/J.CELREP.2020.108208
Page generated: Fri Aug 2 06:03:37 2024

Last articles

Na in 4G0A
Na in 4FXQ
Na in 4FQF
Na in 4FPB
Na in 4FUS
Na in 4FPA
Na in 4FXL
Na in 4FX5
Na in 4FW6
Na in 4FUI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy