Fluorine in PDB 7fx2: Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid
Protein crystallography data
The structure of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid, PDB code: 7fx2
was solved by
A.Ehler,
J.Benz,
U.Obst,
H.Richter,
M.G.Rudolph,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.11 /
1.47
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
31.981,
52.826,
72.229,
90,
90,
90
|
R / Rfree (%)
|
16.2 /
23.6
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid
(pdb code 7fx2). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the
Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid, PDB code: 7fx2:
Jump to Fluorine binding site number:
1;
2;
3;
4;
Fluorine binding site 1 out
of 4 in 7fx2
Go back to
Fluorine Binding Sites List in 7fx2
Fluorine binding site 1 out
of 4 in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:36.0
occ:0.50
|
F28
|
A:QJQ201
|
0.0
|
36.0
|
0.5
|
F28
|
A:QJQ201
|
0.1
|
35.8
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.5
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.3
|
0.5
|
F29
|
A:QJQ201
|
2.1
|
34.5
|
0.5
|
F29
|
A:QJQ201
|
2.1
|
34.1
|
0.5
|
C27
|
A:QJQ201
|
2.2
|
29.0
|
0.5
|
C25
|
A:QJQ201
|
2.2
|
28.5
|
0.5
|
C27
|
A:QJQ201
|
2.2
|
28.7
|
0.5
|
C25
|
A:QJQ201
|
2.3
|
27.7
|
0.5
|
CB
|
A:LYS58
|
3.1
|
26.1
|
1.0
|
OG
|
A:SER55
|
3.2
|
19.3
|
1.0
|
N
|
A:LYS58
|
3.3
|
16.3
|
1.0
|
O
|
A:HOH368
|
3.3
|
20.2
|
1.0
|
C24
|
A:QJQ201
|
3.5
|
26.1
|
0.5
|
CB
|
A:LEU57
|
3.5
|
15.0
|
1.0
|
C
|
A:LEU57
|
3.5
|
18.3
|
1.0
|
C24
|
A:QJQ201
|
3.5
|
26.0
|
0.5
|
C22
|
A:QJQ201
|
3.6
|
26.2
|
0.5
|
C22
|
A:QJQ201
|
3.6
|
26.1
|
0.5
|
CA
|
A:LYS58
|
3.7
|
18.6
|
1.0
|
CA
|
A:LEU57
|
3.8
|
16.1
|
1.0
|
CE
|
A:MET32
|
3.8
|
43.1
|
1.0
|
C23
|
A:QJQ201
|
4.0
|
22.1
|
0.5
|
C23
|
A:QJQ201
|
4.0
|
22.0
|
0.5
|
N
|
A:LEU57
|
4.1
|
14.2
|
1.0
|
O
|
A:LEU57
|
4.1
|
23.2
|
1.0
|
O
|
A:LYS58
|
4.1
|
17.7
|
1.0
|
CG
|
A:LYS58
|
4.2
|
34.6
|
1.0
|
O
|
A:HOH351
|
4.3
|
27.1
|
1.0
|
C
|
A:LYS58
|
4.4
|
17.1
|
1.0
|
CB
|
A:SER55
|
4.5
|
18.8
|
1.0
|
CB
|
A:ALA36
|
4.6
|
18.8
|
1.0
|
CG
|
A:LEU57
|
4.7
|
18.4
|
1.0
|
O
|
A:MET32
|
4.8
|
21.0
|
1.0
|
CB
|
A:MET32
|
4.9
|
26.6
|
1.0
|
|
Fluorine binding site 2 out
of 4 in 7fx2
Go back to
Fluorine Binding Sites List in 7fx2
Fluorine binding site 2 out
of 4 in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:35.8
occ:0.50
|
F28
|
A:QJQ201
|
0.0
|
35.8
|
0.5
|
F28
|
A:QJQ201
|
0.1
|
36.0
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.5
|
0.5
|
C26
|
A:QJQ201
|
1.4
|
29.3
|
0.5
|
F29
|
A:QJQ201
|
2.1
|
34.5
|
0.5
|
F29
|
A:QJQ201
|
2.2
|
34.1
|
0.5
|
C27
|
A:QJQ201
|
2.2
|
29.0
|
0.5
|
C25
|
A:QJQ201
|
2.3
|
28.5
|
0.5
|
C25
|
A:QJQ201
|
2.3
|
27.7
|
0.5
|
C27
|
A:QJQ201
|
2.3
|
28.7
|
0.5
|
CB
|
A:LYS58
|
3.1
|
26.1
|
1.0
|
OG
|
A:SER55
|
3.2
|
19.3
|
1.0
|
N
|
A:LYS58
|
3.2
|
16.3
|
1.0
|
O
|
A:HOH368
|
3.3
|
20.2
|
1.0
|
CB
|
A:LEU57
|
3.4
|
15.0
|
1.0
|
C
|
A:LEU57
|
3.5
|
18.3
|
1.0
|
C24
|
A:QJQ201
|
3.5
|
26.1
|
0.5
|
C24
|
A:QJQ201
|
3.5
|
26.0
|
0.5
|
C22
|
A:QJQ201
|
3.6
|
26.2
|
0.5
|
C22
|
A:QJQ201
|
3.7
|
26.1
|
0.5
|
CA
|
A:LYS58
|
3.7
|
18.6
|
1.0
|
CA
|
A:LEU57
|
3.8
|
16.1
|
1.0
|
CE
|
A:MET32
|
3.8
|
43.1
|
1.0
|
N
|
A:LEU57
|
4.0
|
14.2
|
1.0
|
O
|
A:LEU57
|
4.0
|
23.2
|
1.0
|
C23
|
A:QJQ201
|
4.0
|
22.1
|
0.5
|
C23
|
A:QJQ201
|
4.1
|
22.0
|
0.5
|
O
|
A:LYS58
|
4.2
|
17.7
|
1.0
|
O
|
A:HOH351
|
4.3
|
27.1
|
1.0
|
CG
|
A:LYS58
|
4.3
|
34.6
|
1.0
|
C
|
A:LYS58
|
4.5
|
17.1
|
1.0
|
CB
|
A:SER55
|
4.5
|
18.8
|
1.0
|
CB
|
A:ALA36
|
4.7
|
18.8
|
1.0
|
CG
|
A:LEU57
|
4.7
|
18.4
|
1.0
|
O
|
A:MET32
|
4.8
|
21.0
|
1.0
|
CB
|
A:MET32
|
4.8
|
26.6
|
1.0
|
CD1
|
A:LEU57
|
5.0
|
25.5
|
1.0
|
|
Fluorine binding site 3 out
of 4 in 7fx2
Go back to
Fluorine Binding Sites List in 7fx2
Fluorine binding site 3 out
of 4 in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:34.1
occ:0.50
|
F29
|
A:QJQ201
|
0.0
|
34.1
|
0.5
|
F29
|
A:QJQ201
|
0.0
|
34.5
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.5
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.3
|
0.5
|
F28
|
A:QJQ201
|
2.1
|
36.0
|
0.5
|
F28
|
A:QJQ201
|
2.2
|
35.8
|
0.5
|
C25
|
A:QJQ201
|
2.2
|
27.7
|
0.5
|
C25
|
A:QJQ201
|
2.2
|
28.5
|
0.5
|
C27
|
A:QJQ201
|
2.2
|
29.0
|
0.5
|
C27
|
A:QJQ201
|
2.2
|
28.7
|
0.5
|
C24
|
A:QJQ201
|
2.6
|
26.1
|
0.5
|
C24
|
A:QJQ201
|
2.6
|
26.0
|
0.5
|
O
|
A:MET32
|
3.0
|
21.0
|
1.0
|
C22
|
A:QJQ201
|
3.0
|
26.2
|
0.5
|
C22
|
A:QJQ201
|
3.1
|
26.1
|
0.5
|
C23
|
A:QJQ201
|
3.1
|
22.1
|
0.5
|
C23
|
A:QJQ201
|
3.2
|
22.0
|
0.5
|
C
|
A:MET32
|
3.2
|
18.5
|
1.0
|
CA
|
A:GLY33
|
3.4
|
20.4
|
1.0
|
N
|
A:GLY33
|
3.4
|
18.4
|
1.0
|
CB
|
A:ALA36
|
3.5
|
18.8
|
1.0
|
O
|
A:HOH351
|
3.6
|
27.1
|
1.0
|
CB
|
A:MET32
|
3.7
|
26.6
|
1.0
|
O
|
A:HOH368
|
3.9
|
20.2
|
1.0
|
CA
|
A:MET32
|
4.0
|
19.3
|
1.0
|
CE
|
A:MET32
|
4.2
|
43.1
|
1.0
|
OG
|
A:SER55
|
4.4
|
19.3
|
1.0
|
C
|
A:GLY33
|
4.5
|
16.2
|
1.0
|
S12
|
A:QJQ201
|
4.5
|
24.6
|
0.5
|
C14
|
A:QJQ201
|
4.5
|
20.1
|
0.5
|
S12
|
A:QJQ201
|
4.6
|
23.7
|
0.5
|
C14
|
A:QJQ201
|
4.6
|
19.9
|
0.5
|
CA
|
A:ALA36
|
4.7
|
15.9
|
1.0
|
CG
|
A:MET32
|
4.7
|
38.7
|
1.0
|
O
|
A:GLY33
|
4.7
|
18.0
|
1.0
|
CB
|
A:LEU57
|
4.8
|
15.0
|
1.0
|
N
|
A:ALA36
|
4.9
|
22.0
|
1.0
|
CB
|
A:LYS58
|
4.9
|
26.1
|
1.0
|
|
Fluorine binding site 4 out
of 4 in 7fx2
Go back to
Fluorine Binding Sites List in 7fx2
Fluorine binding site 4 out
of 4 in the Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure of Human FABP4 Binding Site Mutated to That of FABP5 in Complex with 2-[[6,6-Difluoro-3-(4-Methyl-1,3-Thiazol-2-Yl)-5,7- Dihydro-4H-1-Benzothiophen-2-Yl]Carbamoyl]Cyclohexene-1-Carboxylic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F201
b:34.5
occ:0.50
|
F29
|
A:QJQ201
|
0.0
|
34.5
|
0.5
|
F29
|
A:QJQ201
|
0.0
|
34.1
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.5
|
0.5
|
C26
|
A:QJQ201
|
1.3
|
29.3
|
0.5
|
F28
|
A:QJQ201
|
2.1
|
36.0
|
0.5
|
F28
|
A:QJQ201
|
2.1
|
35.8
|
0.5
|
C25
|
A:QJQ201
|
2.2
|
27.7
|
0.5
|
C25
|
A:QJQ201
|
2.2
|
28.5
|
0.5
|
C27
|
A:QJQ201
|
2.2
|
29.0
|
0.5
|
C27
|
A:QJQ201
|
2.3
|
28.7
|
0.5
|
C24
|
A:QJQ201
|
2.6
|
26.1
|
0.5
|
C24
|
A:QJQ201
|
2.6
|
26.0
|
0.5
|
O
|
A:MET32
|
2.9
|
21.0
|
1.0
|
C22
|
A:QJQ201
|
3.1
|
26.2
|
0.5
|
C22
|
A:QJQ201
|
3.1
|
26.1
|
0.5
|
C
|
A:MET32
|
3.1
|
18.5
|
1.0
|
C23
|
A:QJQ201
|
3.1
|
22.1
|
0.5
|
C23
|
A:QJQ201
|
3.2
|
22.0
|
0.5
|
N
|
A:GLY33
|
3.4
|
18.4
|
1.0
|
CA
|
A:GLY33
|
3.4
|
20.4
|
1.0
|
CB
|
A:ALA36
|
3.6
|
18.8
|
1.0
|
O
|
A:HOH351
|
3.6
|
27.1
|
1.0
|
CB
|
A:MET32
|
3.7
|
26.6
|
1.0
|
O
|
A:HOH368
|
3.9
|
20.2
|
1.0
|
CA
|
A:MET32
|
4.0
|
19.3
|
1.0
|
CE
|
A:MET32
|
4.2
|
43.1
|
1.0
|
OG
|
A:SER55
|
4.4
|
19.3
|
1.0
|
C
|
A:GLY33
|
4.5
|
16.2
|
1.0
|
S12
|
A:QJQ201
|
4.5
|
24.6
|
0.5
|
C14
|
A:QJQ201
|
4.6
|
20.1
|
0.5
|
S12
|
A:QJQ201
|
4.6
|
23.7
|
0.5
|
C14
|
A:QJQ201
|
4.6
|
19.9
|
0.5
|
CG
|
A:MET32
|
4.7
|
38.7
|
1.0
|
CA
|
A:ALA36
|
4.7
|
15.9
|
1.0
|
O
|
A:GLY33
|
4.8
|
18.0
|
1.0
|
CB
|
A:LEU57
|
4.8
|
15.0
|
1.0
|
CB
|
A:LYS58
|
4.9
|
26.1
|
1.0
|
N
|
A:ALA36
|
4.9
|
22.0
|
1.0
|
|
Reference:
U.Obst,
C.Magnone,
B.Kuhn,
M.G.Rudolph.
Crystal Structure of A Human FABP4 Binding Site Mutated to That of FABP5 Complex To Be Published.
Page generated: Fri Aug 2 07:16:54 2024
|