Fluorine in PDB 7oob: Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)

All present enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2):
2.7.7.6;

The structure of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) also contains other interesting chemical elements:

Zinc	(Zn)	8 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Fluorine atom in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) (pdb code 7oob). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2), PDB code: 7oob:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range: probe atom residue distance (Å) B Occ b:F1502 b:13.6 occ:1.00 F1 b:BEF1502 0.0 13.6 1.0 BE b:BEF1502 1.5 13.6 1.0 O1B b:ADP1501 2.1 11.3 1.0 HH22 b:ARG947 2.1 12.1 1.0 HH22 b:ARG950 2.2 13.6 1.0 HA b:MET534 2.5 14.7 1.0 F3 b:BEF1502 2.5 13.6 1.0 HH12 b:ARG950 2.5 13.6 1.0 F2 b:BEF1502 2.6 13.6 1.0 H b:GLY535 2.6 13.4 1.0 HG3 b:MET534 2.7 14.7 1.0 HB3 b:MET534 2.8 14.7 1.0 NH2 b:ARG947 3.0 12.1 1.0 NH2 b:ARG950 3.0 13.6 1.0 CA b:MET534 3.2 14.7 1.0 HH12 b:ARG947 3.2 12.1 1.0 CB b:MET534 3.2 14.7 1.0 HA2 b:GLY920 3.3 13.0 1.0 N b:GLY535 3.3 13.4 1.0 NH1 b:ARG950 3.3 13.6 1.0 CG b:MET534 3.3 14.7 1.0 HH21 b:ARG947 3.5 12.1 1.0 PB b:ADP1501 3.5 11.3 1.0 HZ1 b:LYS538 3.6 9.8 1.0 CZ b:ARG950 3.6 13.6 1.0 C b:MET534 3.7 14.7 1.0 HH21 b:ARG950 3.7 13.6 1.0 NH1 b:ARG947 3.8 12.1 1.0 HG2 b:MET534 3.8 14.7 1.0 CZ b:ARG947 3.9 12.1 1.0 H b:GLY920 4.0 13.0 1.0 HH11 b:ARG950 4.0 13.6 1.0 O3B b:ADP1501 4.1 11.3 1.0 HZ3 b:LYS538 4.1 9.8 1.0 HB2 b:MET534 4.1 14.7 1.0 O3A b:ADP1501 4.2 11.3 1.0 CA b:GLY920 4.2 13.0 1.0 HA2 b:GLY535 4.2 13.4 1.0 NZ b:LYS538 4.3 9.8 1.0 MG b:MG1503 4.3 12.1 1.0 CA b:GLY535 4.4 13.4 1.0 N b:MET534 4.4 14.7 1.0 N b:GLY920 4.5 13.0 1.0 OE2 b:GLU647 4.6 12.5 1.0 O2B b:ADP1501 4.6 11.3 1.0 HH11 b:ARG947 4.6 12.1 1.0 HA3 b:GLY920 4.7 13.0 1.0 SD b:MET534 4.7 14.7 1.0 HZ2 b:LYS538 4.8 9.8 1.0 H b:MET534 4.8 14.7 1.0 O b:MET534 4.9 14.7 1.0 HA3 b:GLY535 4.9 13.4 1.0 C b:GLY920 4.9 13.0 1.0 NE b:ARG950 4.9 13.6 1.0

Fluorine binding site 2 out of 3 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range: probe atom residue distance (Å) B Occ b:F1502 b:13.6 occ:1.00 F2 b:BEF1502 0.0 13.6 1.0 BE b:BEF1502 1.6 13.6 1.0 HZ1 b:LYS538 2.4 9.8 1.0 F3 b:BEF1502 2.5 13.6 1.0 F1 b:BEF1502 2.6 13.6 1.0 HG3 b:MET534 2.6 14.7 1.0 OE1 b:GLU647 3.2 12.5 1.0 NZ b:LYS538 3.2 9.8 1.0 HA b:MET534 3.3 14.7 1.0 H b:GLY675 3.3 13.7 1.0 O1B b:ADP1501 3.3 11.3 1.0 OE2 b:GLU647 3.4 12.5 1.0 CG b:MET534 3.5 14.7 1.0 HZ3 b:LYS538 3.5 9.8 1.0 HE3 b:LYS538 3.6 9.8 1.0 HE2 b:LYS538 3.6 9.8 1.0 CD b:GLU647 3.7 12.5 1.0 CE b:LYS538 3.7 9.8 1.0 HH22 b:ARG947 3.7 12.1 1.0 HZ2 b:LYS538 3.8 9.8 1.0 HA2 b:GLY920 4.0 13.0 1.0 CA b:MET534 4.1 14.7 1.0 N b:GLY675 4.1 13.7 1.0 SD b:MET534 4.1 14.7 1.0 HG2 b:MET534 4.1 14.7 1.0 CB b:MET534 4.2 14.7 1.0 HA3 b:GLY675 4.3 13.7 1.0 HA b:SER674 4.3 11.2 1.0 MG b:MG1503 4.3 12.1 1.0 PB b:ADP1501 4.3 11.3 1.0 HB3 b:MET534 4.4 14.7 1.0 OE1 b:GLN943 4.4 13.0 1.0 NH2 b:ARG947 4.4 12.1 1.0 O3B b:ADP1501 4.5 11.3 1.0 H b:GLY535 4.5 13.4 1.0 HH21 b:ARG947 4.5 12.1 1.0 H b:GLY920 4.6 13.0 1.0 N b:MET534 4.7 14.7 1.0 HH22 b:ARG950 4.8 13.6 1.0 CA b:GLY675 4.8 13.7 1.0 HH12 b:ARG950 4.8 13.6 1.0 CA b:GLY920 4.8 13.0 1.0 N b:GLY920 4.9 13.0 1.0 H b:MET534 4.9 14.7 1.0 HA3 b:GLY920 4.9 13.0 1.0 CD b:GLN943 5.0 13.0 1.0

Fluorine binding site 3 out of 3 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range: probe atom residue distance (Å) B Occ b:F1502 b:13.6 occ:1.00 F3 b:BEF1502 0.0 13.6 1.0 BE b:BEF1502 1.5 13.6 1.0 MG b:MG1503 2.0 12.1 1.0 F2 b:BEF1502 2.5 13.6 1.0 F1 b:BEF1502 2.5 13.6 1.0 HA2 b:GLY920 2.6 13.0 1.0 O1B b:ADP1501 2.6 11.3 1.0 O3B b:ADP1501 2.7 11.3 1.0 PB b:ADP1501 3.1 11.3 1.0 OE2 b:GLU647 3.3 12.5 1.0 HH12 b:ARG950 3.3 13.6 1.0 CA b:GLY920 3.4 13.0 1.0 HA3 b:GLY920 3.4 13.0 1.0 HZ1 b:LYS538 3.6 9.8 1.0 HE2 b:LYS538 3.9 9.8 1.0 HH22 b:ARG947 4.0 12.1 1.0 HZ3 b:LYS538 4.0 9.8 1.0 CD b:GLU647 4.0 12.5 1.0 O3A b:ADP1501 4.1 11.3 1.0 NH1 b:ARG950 4.2 13.6 1.0 NZ b:LYS538 4.2 9.8 1.0 OE1 b:GLU647 4.2 12.5 1.0 H b:GLY920 4.2 13.0 1.0 N b:GLY920 4.2 13.0 1.0 HH12 b:ARG947 4.3 12.1 1.0 O b:GLY920 4.3 13.0 1.0 O2B b:ADP1501 4.3 11.3 1.0 C b:GLY920 4.3 13.0 1.0 HG3 b:MET534 4.4 14.7 1.0 HH22 b:ARG950 4.4 13.6 1.0 H b:GLY535 4.4 13.4 1.0 HA b:MET534 4.5 14.7 1.0 HH11 b:ARG950 4.5 13.6 1.0 CE b:LYS538 4.5 9.8 1.0 OD1 b:ASP646 4.6 11.3 1.0 O1A b:ADP1501 4.6 11.3 1.0 NH2 b:ARG947 4.7 12.1 1.0 HB2 b:LYS538 4.7 9.8 1.0 HE3 b:LYS538 4.8 9.8 1.0 PA b:ADP1501 4.9 11.3 1.0 HZ2 b:LYS538 5.0 9.8 1.0 NH1 b:ARG947 5.0 12.1 1.0

G.Kokic, F.R.Wagner, A.Chernev, H.Urlaub, P.Cramer. Structural Basis of Human Transcription-Dna Repair Coupling. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34526721
DOI: 10.1038/S41586-021-03906-4