Fluorine in PDB 7oob: Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)

Enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)

All present enzymatic activity of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2):
2.7.7.6;

Other elements in 7oob:

The structure of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) also contains other interesting chemical elements:

Zinc (Zn) 8 atoms
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) (pdb code 7oob). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2), PDB code: 7oob:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7oob

Go back to Fluorine Binding Sites List in 7oob
Fluorine binding site 1 out of 3 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1502

b:13.6
occ:1.00
F1 b:BEF1502 0.0 13.6 1.0
BE b:BEF1502 1.5 13.6 1.0
O1B b:ADP1501 2.1 11.3 1.0
HH22 b:ARG947 2.1 12.1 1.0
HH22 b:ARG950 2.2 13.6 1.0
HA b:MET534 2.5 14.7 1.0
F3 b:BEF1502 2.5 13.6 1.0
HH12 b:ARG950 2.5 13.6 1.0
F2 b:BEF1502 2.6 13.6 1.0
H b:GLY535 2.6 13.4 1.0
HG3 b:MET534 2.7 14.7 1.0
HB3 b:MET534 2.8 14.7 1.0
NH2 b:ARG947 3.0 12.1 1.0
NH2 b:ARG950 3.0 13.6 1.0
CA b:MET534 3.2 14.7 1.0
HH12 b:ARG947 3.2 12.1 1.0
CB b:MET534 3.2 14.7 1.0
HA2 b:GLY920 3.3 13.0 1.0
N b:GLY535 3.3 13.4 1.0
NH1 b:ARG950 3.3 13.6 1.0
CG b:MET534 3.3 14.7 1.0
HH21 b:ARG947 3.5 12.1 1.0
PB b:ADP1501 3.5 11.3 1.0
HZ1 b:LYS538 3.6 9.8 1.0
CZ b:ARG950 3.6 13.6 1.0
C b:MET534 3.7 14.7 1.0
HH21 b:ARG950 3.7 13.6 1.0
NH1 b:ARG947 3.8 12.1 1.0
HG2 b:MET534 3.8 14.7 1.0
CZ b:ARG947 3.9 12.1 1.0
H b:GLY920 4.0 13.0 1.0
HH11 b:ARG950 4.0 13.6 1.0
O3B b:ADP1501 4.1 11.3 1.0
HZ3 b:LYS538 4.1 9.8 1.0
HB2 b:MET534 4.1 14.7 1.0
O3A b:ADP1501 4.2 11.3 1.0
CA b:GLY920 4.2 13.0 1.0
HA2 b:GLY535 4.2 13.4 1.0
NZ b:LYS538 4.3 9.8 1.0
MG b:MG1503 4.3 12.1 1.0
CA b:GLY535 4.4 13.4 1.0
N b:MET534 4.4 14.7 1.0
N b:GLY920 4.5 13.0 1.0
OE2 b:GLU647 4.6 12.5 1.0
O2B b:ADP1501 4.6 11.3 1.0
HH11 b:ARG947 4.6 12.1 1.0
HA3 b:GLY920 4.7 13.0 1.0
SD b:MET534 4.7 14.7 1.0
HZ2 b:LYS538 4.8 9.8 1.0
H b:MET534 4.8 14.7 1.0
O b:MET534 4.9 14.7 1.0
HA3 b:GLY535 4.9 13.4 1.0
C b:GLY920 4.9 13.0 1.0
NE b:ARG950 4.9 13.6 1.0

Fluorine binding site 2 out of 3 in 7oob

Go back to Fluorine Binding Sites List in 7oob
Fluorine binding site 2 out of 3 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1502

b:13.6
occ:1.00
F2 b:BEF1502 0.0 13.6 1.0
BE b:BEF1502 1.6 13.6 1.0
HZ1 b:LYS538 2.4 9.8 1.0
F3 b:BEF1502 2.5 13.6 1.0
F1 b:BEF1502 2.6 13.6 1.0
HG3 b:MET534 2.6 14.7 1.0
OE1 b:GLU647 3.2 12.5 1.0
NZ b:LYS538 3.2 9.8 1.0
HA b:MET534 3.3 14.7 1.0
H b:GLY675 3.3 13.7 1.0
O1B b:ADP1501 3.3 11.3 1.0
OE2 b:GLU647 3.4 12.5 1.0
CG b:MET534 3.5 14.7 1.0
HZ3 b:LYS538 3.5 9.8 1.0
HE3 b:LYS538 3.6 9.8 1.0
HE2 b:LYS538 3.6 9.8 1.0
CD b:GLU647 3.7 12.5 1.0
CE b:LYS538 3.7 9.8 1.0
HH22 b:ARG947 3.7 12.1 1.0
HZ2 b:LYS538 3.8 9.8 1.0
HA2 b:GLY920 4.0 13.0 1.0
CA b:MET534 4.1 14.7 1.0
N b:GLY675 4.1 13.7 1.0
SD b:MET534 4.1 14.7 1.0
HG2 b:MET534 4.1 14.7 1.0
CB b:MET534 4.2 14.7 1.0
HA3 b:GLY675 4.3 13.7 1.0
HA b:SER674 4.3 11.2 1.0
MG b:MG1503 4.3 12.1 1.0
PB b:ADP1501 4.3 11.3 1.0
HB3 b:MET534 4.4 14.7 1.0
OE1 b:GLN943 4.4 13.0 1.0
NH2 b:ARG947 4.4 12.1 1.0
O3B b:ADP1501 4.5 11.3 1.0
H b:GLY535 4.5 13.4 1.0
HH21 b:ARG947 4.5 12.1 1.0
H b:GLY920 4.6 13.0 1.0
N b:MET534 4.7 14.7 1.0
HH22 b:ARG950 4.8 13.6 1.0
CA b:GLY675 4.8 13.7 1.0
HH12 b:ARG950 4.8 13.6 1.0
CA b:GLY920 4.8 13.0 1.0
N b:GLY920 4.9 13.0 1.0
H b:MET534 4.9 14.7 1.0
HA3 b:GLY920 4.9 13.0 1.0
CD b:GLN943 5.0 13.0 1.0

Fluorine binding site 3 out of 3 in 7oob

Go back to Fluorine Binding Sites List in 7oob
Fluorine binding site 3 out of 3 in the Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Pol II-Csb-Csa-DDB1-Uvssa-ADPBEF3 (STRUCTURE2) within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1502

b:13.6
occ:1.00
F3 b:BEF1502 0.0 13.6 1.0
BE b:BEF1502 1.5 13.6 1.0
MG b:MG1503 2.0 12.1 1.0
F2 b:BEF1502 2.5 13.6 1.0
F1 b:BEF1502 2.5 13.6 1.0
HA2 b:GLY920 2.6 13.0 1.0
O1B b:ADP1501 2.6 11.3 1.0
O3B b:ADP1501 2.7 11.3 1.0
PB b:ADP1501 3.1 11.3 1.0
OE2 b:GLU647 3.3 12.5 1.0
HH12 b:ARG950 3.3 13.6 1.0
CA b:GLY920 3.4 13.0 1.0
HA3 b:GLY920 3.4 13.0 1.0
HZ1 b:LYS538 3.6 9.8 1.0
HE2 b:LYS538 3.9 9.8 1.0
HH22 b:ARG947 4.0 12.1 1.0
HZ3 b:LYS538 4.0 9.8 1.0
CD b:GLU647 4.0 12.5 1.0
O3A b:ADP1501 4.1 11.3 1.0
NH1 b:ARG950 4.2 13.6 1.0
NZ b:LYS538 4.2 9.8 1.0
OE1 b:GLU647 4.2 12.5 1.0
H b:GLY920 4.2 13.0 1.0
N b:GLY920 4.2 13.0 1.0
HH12 b:ARG947 4.3 12.1 1.0
O b:GLY920 4.3 13.0 1.0
O2B b:ADP1501 4.3 11.3 1.0
C b:GLY920 4.3 13.0 1.0
HG3 b:MET534 4.4 14.7 1.0
HH22 b:ARG950 4.4 13.6 1.0
H b:GLY535 4.4 13.4 1.0
HA b:MET534 4.5 14.7 1.0
HH11 b:ARG950 4.5 13.6 1.0
CE b:LYS538 4.5 9.8 1.0
OD1 b:ASP646 4.6 11.3 1.0
O1A b:ADP1501 4.6 11.3 1.0
NH2 b:ARG947 4.7 12.1 1.0
HB2 b:LYS538 4.7 9.8 1.0
HE3 b:LYS538 4.8 9.8 1.0
PA b:ADP1501 4.9 11.3 1.0
HZ2 b:LYS538 5.0 9.8 1.0
NH1 b:ARG947 5.0 12.1 1.0

Reference:

G.Kokic, F.R.Wagner, A.Chernev, H.Urlaub, P.Cramer. Structural Basis of Human Transcription-Dna Repair Coupling. Nature 2021.
ISSN: ESSN 1476-4687
PubMed: 34526721
DOI: 10.1038/S41586-021-03906-4
Page generated: Fri Nov 5 13:17:03 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy