Fluorine in PDB, part 227 (files: 9041-9080),
PDB 8d7z-8dxh
Experimental structures of coordination spheres of Fluorine (F) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Fluorine atoms. PDB files: 9041-9080 (PDB 8d7z-8dxh).
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8d7z (F: 1) - Cereblon-DDB1 Bound to Cc-92480 and Ikaros ZF1-2-3
Other atoms:
Zn (2);
-
8d98 (F: 4) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 5
Other atoms:
Zn (2);
K (4);
-
8d99 (F: 3) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 7
Other atoms:
K (4);
Zn (2);
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8d9a (F: 6) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 8
Other atoms:
Zn (2);
K (4);
-
8d9b (F: 8) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 9
Other atoms:
Zn (2);
K (4);
-
8d9c (F: 10) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 10
Other atoms:
K (4);
Zn (2);
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8db7 (F: 3) - Adenosine/Guanosine Nucleoside Hydrolase Bound to A Fragment Inhibitor
Other atoms:
Ca (4);
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8dcz (F: 6) - Crystal Structure of Sars-Cov-2 Main Protease (Mpro) M165Y Mutant in Complex with Nirmatrelvir
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8ddf (F: 12) - Quasi-Racemic Mixture of L-Fwf and D-Fyf Peptide Reveals Rippled Beta- Sheet
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8deg (F: 2) - Crystal Structure of Dlk in Complex with Inhibitor DN0011197
-
8dfc (F: 8) - Cryoem Structure of the 1:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Other atoms:
Mo (2);
Al (2);
Mg (2);
Fe (36);
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8dfd (F: 16) - Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Other atoms:
Mg (4);
Fe (40);
Mo (2);
Al (4);
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8dg6 (F: 1) - Scaffold Hopping Via Ring Opening Enables Identification of Acyclic Compounds As New Complement Factor D Inhibitors
Other atoms:
Cl (1);
-
8dgs (F: 1) - Cryo-Em Structure of A Ras/Raf Complex (State 1)
Other atoms:
Zn (2);
I (1);
Mg (2);
-
8dgt (F: 1) - Cryo-Em Structure of A Ras/Raf Complex (State 2)
Other atoms:
Zn (2);
I (1);
Mg (2);
-
8dhb (F: 3) - Active Flcn Gap Complex
-
8dhf (F: 5) - Dhodh in Complex with Ligand 11
Other atoms:
Cl (1);
-
8dhg (F: 4) - Dhodh in Complex with Ligand 19
Other atoms:
Cl (1);
-
8dhh (F: 4) - Dhodh in Complex with Ligand 29
Other atoms:
Cl (1);
-
8dig (F: 1) - Virtual Screening For Novel Sars-Cov-2 Main Protease Non-Covalent and Covalent Inhibitors
-
8dip (F: 3) - The Crystal Structure of I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with Compound SJ001023030
Other atoms:
Mn (2);
-
8dk4 (F: 1) - Peroxisome Proliferator-Activated Receptor Gamma in Complex with Vsp- 51-2
Other atoms:
Cl (1);
-
8dl4 (F: 2) - S. Cerevisiae CYP51 Complexed with Courmarin-Containing Inhibitor
Other atoms:
Fe (1);
-
8dla (F: 18) - CLPP2 From Chlamydia Trachomatis Bound By MAS1-12
Other atoms:
Na (8);
Cl (6);
-
8dn0 (F: 2) - E.Coli Dsba in Complex with N-(2-Fluorophenyl)-5-Methylisoxazole-3- Carboxamide
Other atoms:
Cu (1);
Na (1);
-
8dnj (F: 3) - Crystal Structure of Human Kras G12C Covalently Bound with Astrazeneca WO2020/178282A1 Compound 76
Other atoms:
Cl (3);
Mg (3);
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8dox (F: 4) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with An Inhibitor Tkb-245
-
8doy (F: 4) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with An Inhibitor Tkb-198
-
8dpj (F: 3) - The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with Compound SJ001023030
Other atoms:
Mn (2);
-
8dpr (F: 4) - Crystal Structure of Sars-Cov-2 Main Protease in Complex with Inhibitor Tkb-248
Other atoms:
Zn (1);
-
8dqs (F: 3) - The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with Compound SJ001023032
Other atoms:
Mn (2);
-
8dtj (F: 6) - Human Nampt in Complex with Small Molecule Activator Zn-43-S
Other atoms:
Cl (1);
-
8dtw (F: 3) - The Crystal Structure of I38T Mutant Pa Endonuclease (2009/H1N1/California) in Complex with Compound SJ001023036
Other atoms:
Mn (2);
Mg (1);
-
8dvb (F: 2) - Estrogen Receptor Alpha Ligand Binding Domain in Complex with (1'-(4- ((1-Butylpyrrolidin-3-Yl)Methoxy)Phenyl)-6'-Hydroxy-1',4'-Dihydro- 2'H-Spiro[Cyclopropane-1,3'-Isoquinolin]-2'-Yl)(Phenyl) Methanone
-
8dvo (F: 3) - The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with Compound SJ001023044
Other atoms:
Mn (2);
-
8dx8 (F: 1) - Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 2-Chloro- 6-Fluorophenethylamine at the 415 Site
Other atoms:
Mg (1);
Cl (1);
-
8dxb (F: 2) - Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 5- Fluoroindole-2-Carboxylic Acid at the Nnrti Adjacent Site
Other atoms:
Mg (1);
-
8dxe (F: 1) - Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 2-Amino-6- Fluorobenzonitrile at the Nnrti Adjacent Site
Other atoms:
Mg (1);
-
8dxg (F: 3) - Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 5- (Trifluoromethyl)Pyridin-2-Ol at W24 Site
Other atoms:
Mg (1);
-
8dxh (F: 1) - Hiv-1 Reverse Transcriptase/Rilpivirine with Bound Fragment 5- Fluoroquinazolin-4-Ol at W266 Site
Other atoms:
Mg (1);
Page generated: Mon Aug 4 22:16:04 2025
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