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Fluorine in PDB 4axx: The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride
Enzymatic activity of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride
All present enzymatic activity of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride:
2.7.2.3;
2.7.2.3;
Protein crystallography data
The structure of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride, PDB code: 4axx
was solved by
M.W.Bowler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 20.00 / 1.74 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 38.820, 90.800, 108.540, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 16.976 / 20.65 |
Other elements in 4axx:
The structure of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
| Chlorine | (Cl) | 1 atom |
Fluorine Binding Sites:
The binding sites of Fluorine atom in the The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride
(pdb code 4axx). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride, PDB code: 4axx:
Jump to Fluorine binding site number: 1; 2; 3;
In total 3 binding sites of Fluorine where determined in the The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride, PDB code: 4axx:
Jump to Fluorine binding site number: 1; 2; 3;
Fluorine binding site 1 out of 3 in 4axx
Go back to
Fluorine Binding Sites List in 4axx
Fluorine binding site 1 out
of 3 in the The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 1 of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride within 5.0Å range:
|
Fluorine binding site 2 out of 3 in 4axx
Go back to
Fluorine Binding Sites List in 4axx
Fluorine binding site 2 out
of 3 in the The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 2 of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride within 5.0Å range:
|
Fluorine binding site 3 out of 3 in 4axx
Go back to
Fluorine Binding Sites List in 4axx
Fluorine binding site 3 out
of 3 in the The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 3 of The Catalytically Active Fully Closed Conformation of Human Phosphoglycerate Kinase in Complex with Adp 3-Phosphoglycerate and Beryllium Trifluoride within 5.0Å range:
|
Reference:
M.W.Bowler,
M.J.Cliff,
G.M.Blackburn,
J.P.Waltho.
Catalytic Activity in the Transitions State Analogue Stabilised Conformation of A Phosphoryl Transfer Enzyme To Be Published.
Page generated: Sun Dec 13 11:58:57 2020
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